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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7003 cluster # 7003       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7003#0 length = 772 sequences # 3  
consensus_7003#1 length = 446 sequences # 1  

consensusID : consensus_7003#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 772
fasta sequence
                              [TGTTACTTACTTGGCCTAAATGTATGGGCCCCAAACACGGGAGCATCGGCAACACCGTCCATCTAGACGTCGCCTAACTTCTGCAACAACTCGAACTAACTTTAACTGCAACCCTCCAGTTACTTCTGCGTCAAGTACAACATCTAATTGGGAACCGAATAACGGAGCTCAAAATTTGGGACCAGAAGAGCCTGACCATGATCTAGAACCTCCTCGATTTGCACGTGCTGCATTTGAATTGGCTCTTGATTGCCCTGCAGCTGTCCATAGCATGCTGACATTAGATAGCAATTCAGATGTTCTGGATACTGATCCACTTCATCAAAAGAATGGCTTCGTTAATGAAGACCAAGTTTTTCTGTCATCTCAAGGTGGTACAAATCAGTTGGATGATTTTGTATTCACACTTATTTGCAAGTGTCCCCCCGAAATAACTGACATTTTACTGTCTACTTTAAATCGATGTATCATTAGTTTTCCTTCAAGCATTGAAGAAAAGAAAAGAAAATTTTCAGATGATACTTTGCCGGCGGATATACCAAATAATTCTTCATTTTTGAAGCAGTGTGATTATCCTAACTCAGTAGAAATGACATTAGCGGCCGCTCGGTTTATTCGCTCTGTAGCTCGAATATACGCTAGTTTGTCTTTGGAATTGGCTCCTGACCAGAAAAAGAAGAGCCGTTTGGGTTTGGCTCAGCCAACGCTTTTGGATCTTTGTCGACATGTATTCAGCAGTTTGGCTCCAATTGCTATTAATGAATTGCCTGTA]

[-] EMBL CD125629             [TGTTACTTACTTGGCCTAAATGTATGGGCCCCAAACACGGGAGCATCGGCAACACCGTCCATCTAGACGTCGCCTAACTTCTGCAACAACTCGAACTAACTTTAACTGCAACCCTCCAGTTACTTCTGCGTCAAGTACAACATCTAATTGGGAACCGAATAACGGAGCTCAAAATTTGGGACCAGAAGAGCCTGACCATGATCTAGAACCTCCTCGATTTGCACGTGCTGCATTTGAATTGGCTCTTGATTGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD095752             [                                                   ACACCGTCCATCTAGACGTCGCCTAACTTCTGCAACAACTCGAACTAACTCTAACTGCAACCCTCCAGTTACTTCTGCGTCAAGTACAACATCTAATTGGGAACCGAATAACGGAGCTCAAAATTTGGGACCAGAAGAGCCTGACCATGATCTAGAACCTCCTCGATTTGCACGTGATGCATTTGAATTGGCTCTTGATTGCCCTGCAGCTGTCCATAGCATGCTGACATTAGATAGCAATTCAGATGTTCTGGATACTGATCCACTTCATCAAAAGAATGGCTTCGTTAATGAAGACCAAGTTTTTCTGTCATCTCAAGGTGGTACAAATCAGTTGGATGATTTTGTATTCACACTTATTTGCAAGTGTCCCCCCGAAATAACTGACATTTTACTGTCTACTTTAAATCGATGTATCATTAGTTTTCCTTCAAGCATTGAAGAAAAGAAAAGAAAATTTTCAGATGATACTTTGCCGGCGGATATACCAAATAATTCTTCATTTTTGAAGCAGTGTGATTATCCTAACTCAGTAGAAATGACATTAGCGG                                                                                                                                                                          ]
[-] EMBL CD160167             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGTCTACTTTAAATCGATGTATCATTAGTTTTCCTTCAAGCATTGAAGAAAAGAAAAGAAAATTTTCAGATGATACTTTGCCGGCGGATACACCAAATAATTCTTCATTTTTGAAGCAGTGTGATTATCCTAACTCAGTAGAAATGACATTAGCGGCCGCTCGGTTTATTCGCTCTGTAGCTCGAATATACGCTAGTTTGTCTTTGGAATTGGCTCCTGACCAGAAAAAGAAGAGCCGTTTGGGTTTGGCTCAGCCAACGCTTTTGGATCTTTGTCGACATGTATTCAGCAGTTTGGCTCCAATTGCTATTAATGAATTGCCTGTA]


>consensus_7003#0 TGTTACTTACTTGGCCTAAATGTATGGGCCCCAAACACGGGAGCATCGGCAACACCGTCC ATCTAGACGTCGCCTAACTTCTGCAACAACTCGAACTAACTTTAACTGCAACCCTCCAGT TACTTCTGCGTCAAGTACAACATCTAATTGGGAACCGAATAACGGAGCTCAAAATTTGGG ACCAGAAGAGCCTGACCATGATCTAGAACCTCCTCGATTTGCACGTGCTGCATTTGAATT GGCTCTTGATTGCCCTGCAGCTGTCCATAGCATGCTGACATTAGATAGCAATTCAGATGT TCTGGATACTGATCCACTTCATCAAAAGAATGGCTTCGTTAATGAAGACCAAGTTTTTCT GTCATCTCAAGGTGGTACAAATCAGTTGGATGATTTTGTATTCACACTTATTTGCAAGTG TCCCCCCGAAATAACTGACATTTTACTGTCTACTTTAAATCGATGTATCATTAGTTTTCC TTCAAGCATTGAAGAAAAGAAAAGAAAATTTTCAGATGATACTTTGCCGGCGGATATACC AAATAATTCTTCATTTTTGAAGCAGTGTGATTATCCTAACTCAGTAGAAATGACATTAGC GGCCGCTCGGTTTATTCGCTCTGTAGCTCGAATATACGCTAGTTTGTCTTTGGAATTGGC TCCTGACCAGAAAAAGAAGAGCCGTTTGGGTTTGGCTCAGCCAACGCTTTTGGATCTTTG TCGACATGTATTCAGCAGTTTGGCTCCAATTGCTATTAATGAATTGCCTGTA



consensusID : consensus_7003#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence
                              [CTAATGAGGATGGGTCAGAGACATAATCCACAGTGGAATTCTCAGGCGATTCGGAAATACACCGAATGGTATCATATAAAAACCGAGCAACACTGTAAGCTCGAATTTTAATCGCCAACATAAATGGTGTTAGGTCTTCAGTATTGCGAGCAGTTAGAAGCGGGATCAAACTAGGTATTAAATGTCGACTCTCTACTAAAAGACGAAGGATGCGATATGAAGAAATTCTCCGAGTAAGTTCATCTTTTCGTACTGGAGGAAGATGCCAAAAATTTATACCATTTCCAGATGAAGGAGCAGTGTTAGAGGTGGTGCGCACATCCGAGTCACCACGTGAAGTAGAGCTAGATAATGCTGCTGCCGCCGCAACAGTAGCAGCTTCAATAGAAGATCGAATAAACCGAGCGGCCGCTAATGTCATTTCTACTGAGTTAGGATAATCACAC]

[+] EMBL CD184750             [CTAATGAGGATGGGTCAGAGACATAATCCACAGTGGAATTCTCAGGCGATTCGGAAATACACCGAATGGTATCATATAAAAACCGAGCAACACTGTAAGCTCGAATTTTAATCGCCAACATAAATGGTGTTAGGTCTTCAGTATTGCGAGCAGTTAGAAGCGGGATCAAACTAGGTATTAAATGTCGACTCTCTACTAAAAGACGAAGGATGCGATATGAAGAAATTCTCCGAGTAAGTTCATCTTTTCGTACTGGAGGAAGATGCCAAAAATTTATACCATTTCCAGATGAAGGAGCAGTGTTAGAGGTGGTGCGCACATCCGAGTCACCACGTGAAGTAGAGCTAGATAATGCTGCTGCCGCCGCAACAGTAGCAGCTTCAATAGAAGATCGAATAAACCGAGCGGCCGCTAATGTCATTTCTACTGAGTTAGGATAATCACAC]


>consensus_7003#1 CTAATGAGGATGGGTCAGAGACATAATCCACAGTGGAATTCTCAGGCGATTCGGAAATAC ACCGAATGGTATCATATAAAAACCGAGCAACACTGTAAGCTCGAATTTTAATCGCCAACA TAAATGGTGTTAGGTCTTCAGTATTGCGAGCAGTTAGAAGCGGGATCAAACTAGGTATTA AATGTCGACTCTCTACTAAAAGACGAAGGATGCGATATGAAGAAATTCTCCGAGTAAGTT CATCTTTTCGTACTGGAGGAAGATGCCAAAAATTTATACCATTTCCAGATGAAGGAGCAG TGTTAGAGGTGGTGCGCACATCCGAGTCACCACGTGAAGTAGAGCTAGATAATGCTGCTG CCGCCGCAACAGTAGCAGCTTCAATAGAAGATCGAATAAACCGAGCGGCCGCTAATGTCA TTTCTACTGAGTTAGGATAATCACAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7003#0      TGTTACTTACTTGGCCTAAATGTATGGGCCCCAAACACGGGAGCATCGGCAACACCGTCC 60
consensus_7003#1      ------------------------------------------------------------
                                                                                  

consensus_7003#0      ATCTAGACGTCGCCTAACTTCTGCAACAACTCGAACTAACTTTAACTGCAACCCTCCAGT 120
consensus_7003#1      -----------------------------------CTAATGAGGATGG--GTCAGAGACA 23
                                                         ****     *  *    *    *  

consensus_7003#0      TACTTCTGCGTCAAGTACAACATCTAATTGGGAACCGAATAACGGAGCTCAAAATTTGGG 180
consensus_7003#1      TAATCCACAGTGGAATTCTCAGGCGATTCGGAAAT---ACACCGAATGGTATCATATAAA 80
                      ** * *   **  * * *     * * * ** **    * * ** *    *  ** *   

consensus_7003#0      ACCAGAAGAGCCTGACCATGATCTAGAACCTCCTCGATTTGCACGTGCTGCATTTGAATT 240
consensus_7003#1      AACCGAGCAAC---ACTGTAAGCTCGAATTTTAATCGCCAACATA------AATGGTGTT 131
                      * * **  * *   **  * * ** ***  *          **        * * *  **

consensus_7003#0      GGCTCTTGATTGCCCTGCAGCTGTCCATAGCATGCTGACATTAGATAGCAATT-CAGATG 299
consensus_7003#1      AGGTCTTCAGTATTGCG-AGCAGTTAGAAGCGGGATCAAACTAGGTATTAAATGTCGACT 190
                       * **** * *     * *** **    ***  * * * * *** **  ** *   **  

consensus_7003#0      TTCTGGATACTGATCCACTTCATCAAAAGAATGGCTTCGTTAATGAAGACCAAGTTTTTC 359
consensus_7003#1      CTCTACTAAAAGACGAAGGATGCGATATGAAGAAATTCTCCGAGTAAGTTCATCTTTTCG 250
                       ***    *  **   *       * * ***    ***    *  ***  **  ****  

consensus_7003#0      TGTCATCTCAAGGTGGTACAAATCAGTTGGATGATTTTGTATTCACACTTATTTGCAAGT 419
consensus_7003#1      TACTGGAGGAAGATGCCAAAAATTTATACCATTTCCAGATGAAGGAGCAGTGTTAGAGGT 310
                      *        *** **  * ****   *   **       *       *    **  * **

consensus_7003#0      GTCCCCCCGAAATAACTGACATTTTACTGTCTACTTTAAATCGATGTATCATTAGTTTTC 479
consensus_7003#1      GGTGCGC----ACATCCGAG---TCACCACGTGAAGTAGAGCTAGATAATGCTGCTGCCG 363
                      *   * *    * * * **    * **    *    ** * * *  **    *  *    

consensus_7003#0      CTTCAAGCATTGAAGAAAAGAAAAGAAAATTTTCAGATGATACTTTGCCGGCGGATATAC 539
consensus_7003#1      CCGCAA-CAGTAGCAGCTTCAATAGAAGAT---CGAATAA-ACCGAGCGGCCGCTAATGT 418
                      *  *** ** *         ** **** **   *  ** * **   ** * **   **  

consensus_7003#0      CAAATAATTCTTCATTTTTGAAGCAGTGTGATTATCCTAACTCAGTAGAAATGACATTAG 599
consensus_7003#1      CA---------TTTCTACTGAGTTAGGATAATCACAC----------------------- 446
                      **         *   *  ***   **  * ** *  *                       

consensus_7003#0      CGGCCGCTCGGTTTATTCGCTCTGTAGCTCGAATATACGCTAGTTTGTCTTTGGAATTGG 659
consensus_7003#1      ------------------------------------------------------------
                                                                                  

consensus_7003#0      CTCCTGACCAGAAAAAGAAGAGCCGTTTGGGTTTGGCTCAGCCAACGCTTTTGGATCTTT 719
consensus_7003#1      ------------------------------------------------------------
                                                                                  

consensus_7003#0      GTCGACATGTATTCAGCAGTTTGGCTCCAATTGCTATTAATGAATTGCCTGTA 772
consensus_7003#1      -----------------------------------------------------
                                                                           




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)