cluster # 7007

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Schistosoma mansoni
cluster # 7007 cluster # 7007 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7007#0 length = 366 sequences # 3

consensus_7007#1 length = 345 sequences # 1

consensusID : consensus_7007#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 366
fasta sequence

                              [CTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAATTAGGGATTTCATTTCACGTCACTATCTGTCTCTAAAATCTGCCAATCCTCATGTGAAGTTTATGATTCGTGAATCAGAAGGGATCACACC-AAAAGTGTTTG-CTCGTTATGAGATGGGGAAGGAAGACTATATTTCAGTGGCAAATAACACAGCTGATGATATAATTTCGAGACTGAAGACTCTAGATCGAGTATAAATGTTTTNTTGNGACAATTCTACGCAAATTAGNTTACAATTAATAACTTTCAGGATAAATAGCATGGTGGNGATTTTATTCANTNGTGTCAGCAAAAGAAATATTCANCTTGTTAAAATATANTCA]

[+] EMBL AA917137             [CTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAATTAGGGATTTCATTTCACTGCATTATCTGTCTCTAAAATCTGCCAATCCTCATGTGAAGTTTATGATTCGTGAATCAGAAGGGATCACACCAAAAAGTGTTTGCCTCGTTATGAGAGGGGGAAGGAAGACTATATTTCAGTGGCAAATAACACAGCTGATGATATAATTTCGAGACTGAAGACTCTAGATCG                                                                                                                                     ]
[+] EMBL SM7102               [   CGCTTTCNCGTTGCTCNTACTGCTCCTTCGAGCGCTGGAATTAGGGATTTCATTTCACGTCACTATCTGTCTCTAAAATCTGCCAATCCTCATGTGAAGTTTATGATTCGGGAATCAGAAGGGATCACACC AAAAGTGTTTG CTCGTTATGAGATGGGGAAGGAAGACTATATTTCAGTGGCAAATAACACAGCTGATGATATAATTTCGAGACTGAAGACTCTAGATCGAGTATAAATGTTTTNTTGNGACAATTCTACGCAAATTAGNTTACAATTAATAACTTTCAGGATAAATAGCATGGTGGNGATTTTATTCANTNGTGTCAGCAAAAGAAATATTCANCTTGTTAAAATATANTCA]
[+] EMBL SM7131               [                                                      ATTTCACGTCACTATCTGTCTCTAAAATCTGCCAATCCTCATGTGAAGTTTATGANTCGTGAATCAGAAGGGATCACACC AAAAGTGTTTG CTCGCTATGAGATGGGGAGGGAGGNCTATATTTCAGTGGCAAATAACACAGCGGAT                                                                                                                                                                     ]




>consensus_7007#0
CTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAATTAGGGATTTCATTTCA
CGTCACTATCTGTCTCTAAAATCTGCCAATCCTCATGTGAAGTTTATGATTCGTGAATCA
GAAGGGATCACACCAAAAGTGTTTGCTCGTTATGAGATGGGGAAGGAAGACTATATTTCA
GTGGCAAATAACACAGCTGATGATATAATTTCGAGACTGAAGACTCTAGATCGAGTATAA
ATGTTTTNTTGNGACAATTCTACGCAAATTAGNTTACAATTAATAACTTTCAGGATAAAT
AGCATGGTGGNGATTTTATTCANTNGTGTCAGCAAAAGAAATATTCANCTTGTTAAAATA
TANTCA

consensusID : consensus_7007#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence

                              [GAGCCAANGTTANAGANCTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAATTAGGGATTNCATTNCACGTCACTATCTGTCTCTAAAATCTGCCANTCCTCATGTGANGTTTATGANTCGTGAATCAGNGGGGATCACNCCAANANTGTCTGCTCGTNATNAGATGGGGAAGGAAGACTATNTNTCNGTGGCAAANANCNCGGCTGATGATTTTTCTTTCGAGACTNANCACCCTAGATCGAGTATNTNTGTTTNTTNGTNACCANCCNCCGCAAATTANTTTACAAATTNATACCTNCCCGGATAAATACATTGTTGTTATTTNTTAATNCNTT]

[+] EMBL AW466258             [GAGCCAANGTTANAGANCTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAATTAGGGATTNCATTNCACGTCACTATCTGTCTCTAAAATCTGCCANTCCTCATGTGANGTTTATGANTCGTGAATCAGNGGGGATCACNCCAANANTGTCTGCTCGTNATNAGATGGGGAAGGAAGACTATNTNTCNGTGGCAAANANCNCGGCTGATGATTTTTCTTTCGAGACTNANCACCCTAGATCGAGTATNTNTGTTTNTTNGTNACCANCCNCCGCAAATTANTTTACAAATTNATACCTNCCCGGATAAATACATTGTTGTTATTTNTTAATNCNTT]




>consensus_7007#1
GAGCCAANGTTANAGANCTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAA
TTAGGGATTNCATTNCACGTCACTATCTGTCTCTAAAATCTGCCANTCCTCATGTGANGT
TTATGANTCGTGAATCAGNGGGGATCACNCCAANANTGTCTGCTCGTNATNAGATGGGGA
AGGAAGACTATNTNTCNGTGGCAAANANCNCGGCTGATGATTTTTCTTTCGAGACTNANC
ACCCTAGATCGAGTATNTNTGTTTNTTNGTNACCANCCNCCGCAAATTANTTTACAAATT
NATACCTNCCCGGATAAATACATTGTTGTTATTTNTTAATNCNTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7007#0      -----------------CTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAA 43
consensus_7007#1      GAGCCAANGTTANAGANCTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAA 60
                                       *******************************************

consensus_7007#0      TTAGGGATTTCATTTCACGTCACTATCTGTCTCTAAAATCTGCCAATCCTCATGTGAAGT 103
consensus_7007#1      TTAGGGATTNCATTNCACGTCACTATCTGTCTCTAAAATCTGCCANTCCTCATGTGANGT 120
                      ********* **** ****************************** *********** **

consensus_7007#0      TTATGATTCGTGAATCAGAAGGGATCACACCAAAAGTGTTTGCTCGTTATGAGATGGGGA 163
consensus_7007#1      TTATGANTCGTGAATCAGNGGGGATCACNCCAANANTGTCTGCTCGTNATNAGATGGGGA 180
                      ****** ***********  ******** **** * *** ******* ** *********

consensus_7007#0      AGGAAGACTATATTTCAGTGGCAAATAACACAGCTGATGATATAA-TTTCGAGACTGAAG 222
consensus_7007#1      AGGAAGACTATNTNTCNGTGGCAAANANCNCGGCTGATGATTTTTCTTTCGAGACTNANC 240
                      *********** * ** ******** * * * ********* *   ********** *  

consensus_7007#0      ACTCTAGATCGAGTATAAATGTTTTNTTGNGACAATTCTACGCAAATTAGNTTACAA-TT 281
consensus_7007#1      ACCCTAGATCGAGTATNTNTGTTTNTTNGTNACCANCCNCCGCAAATTANTTTACAAATT 300
                      ** *************   *****  * *  ** *  *  *********  ****** **

consensus_7007#0      AATAACTTTCAGGATAAATAGCATGGTGGNGATTTTATTCANTNGTGTCAGCAAAAGAAA 341
consensus_7007#1      NATACCTNCCCGGATAAATA-CATTGTTGTTATTTN-TTAATNCNTT------------- 345
                       *** **  * ********* *** ** *  ****  ** *    *              

consensus_7007#0      TATTCANCTTGTTAAAATATANTCA 366
consensus_7007#1      -------------------------