These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 890 fasta sequence [GATTGGGGCCGGCCTGGGGGAATACTGAATGCAGGCAATCTTTTCAATAAAATCATTCTTTGCCGACTTGAGAGTTATAAATTGTTGAACATCAAAGGTTCTGCTGAAAAATATCTGAAACCCCTTTTTCCAACTTTAATTCAACTTTGGCCTGATGGTTGGATTACTAATGCCGCATTATGGCGTACTGGTTTACCGATCTTCCAAAAGTTTTGCAGCGATAATGGTTTGATTAACAACACTTCAGCATCTCAATCGCTTACACGACCTACGAACAACAATAACAACCATAATAGTAATGGAAGTAATGGAAGAAATCACAATTCGCCTTCTTCTGCAAATACAACACCTCCTCGTGACTCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCATACCCCATATTTCTTCGAATATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAACAGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTTCCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAATCGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCCCAAAGTTCAATTAATTCGAAAACTGTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTATGTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACCTCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATAGGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC] [+] EMBL CD200791 [GATTGGGGCCGGCCTGGGGGAATACTGAATGCAGGCAATCTTTTCAATAAAATCATTCTTTGCCGACTTGAGAGTTATAAATTGTTGAACATCAAAGGTTCTGCTGAAAAATATCTGAAACCCCTTTTTCCAACTTTAATTCAACTTTGGCCTGATGGTTGGATTACTAATGCCGCATTATGGCGTACTGGTTTACCGATCTTCCAAAAGTTTTGCAGCGATAATGGTTTGATTAACAACACTTCAGCATCTCAATCGCTTACACGACCTACGAACAACAATAACAACCATAATAGTAATGGAAGTAATGGAAGAAATCACAATTCGCCTTCTTCTGCAAATACAACACCTCCTCGTGACTCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCATACCCCATATTTCTTCGAATATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAACAGTAGTCCACGTACAAGTTT ] [-] EMBL CD096574 [ TCTTCTGCAAATACAACACCTCTTCGTGACTCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCATACNCCATATTTCTTCGAATATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAACAGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTTCCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAATCGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCCCAAAGTTCAATTAATTCGAAAACTGTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTATGTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACCTCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATAGGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC] consensusID : consensus_7027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 561 fasta sequence [CTGAGTAATCTCCCATATACCTCTTCGTGACTCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCGTACCCCATATTTCTTCGAATATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAACAGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTTCCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAATCGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCTCAAAGTTCAATTAATTCGAAAACTGTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTATGTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACCTCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATAGGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC] [-] EMBL CD096560 [CTGAGTAATCTCCCATATACCTCTTCGTGACTCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCGTACCCCATATTTCTTCGAATATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAACAGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTTCCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAATCGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCTCAAAGTTCAATTAATTCGAAAACTGTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTATGTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACCTCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATAGGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC] [-] EMBL CD096533 [ TAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCGTACGCCATATTTCTTCGAATATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAACAGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTTCCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAATCGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCTCAAAGTTCAATTAATTCGAAAACTGTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTATGTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACCTCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATAGGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7027#0 GATTGGGGCCGGCCTGGGGGAATACTGAATGCAGGCAATCTTTTCAATAAAATCATTCTT 60 consensus_7027#1 ------------------------------------------------------------ consensus_7027#0 TGCCGACTTGAGAGTTATAAATTGTTGAACATCAAAGGTTCTGCTGAAAAATATCTGAAA 120 consensus_7027#1 ------------------------------------------------------------ consensus_7027#0 CCCCTTTTTCCAACTTTAATTCAACTTTGGCCTGATGGTTGGATTACTAATGCCGCATTA 180 consensus_7027#1 ------------------------------------------------------------ consensus_7027#0 TGGCGTACTGGTTTACCGATCTTCCAAAAGTTTTGCAGCGATAATGGTTTGATTAACAAC 240 consensus_7027#1 ------------------------------------------------------------ consensus_7027#0 ACTTCAGCATCTCAATCGCTTACACGACCTACGAACAACAATAACAACCATAATAGTAAT 300 consensus_7027#1 ------------------------------------------------------------ consensus_7027#0 GGAAGTAATGGAAGAAATCACAATTCGCCTTCTTCTGCAAATACAACACCTCCTCGTGAC 360 consensus_7027#1 ------------------------CTGAGTAATCTCCCATAT-----ACCTCTTCGTGAC 31 * * * ** ** ***** ******* consensus_7027#0 TCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCATACCCCATATTTCTTCGAAT 420 consensus_7027#1 TCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCGTACCCCATATTTCTTCGAAT 91 *************************************** ******************** consensus_7027#0 ATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAAC 480 consensus_7027#1 ATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAAC 151 ************************************************************ consensus_7027#0 AGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTT 540 consensus_7027#1 AGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTT 211 ************************************************************ consensus_7027#0 CCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAAT 600 consensus_7027#1 CCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAAT 271 ************************************************************ consensus_7027#0 CGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCCCAAAGTTCAATTAATTCGAAAACT 660 consensus_7027#1 CGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCTCAAAGTTCAATTAATTCGAAAACT 331 *********************************** ************************ consensus_7027#0 GTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTAT 720 consensus_7027#1 GTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTAT 391 ************************************************************ consensus_7027#0 GTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACC 780 consensus_7027#1 GTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACC 451 ************************************************************ consensus_7027#0 TCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATA 840 consensus_7027#1 TCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATA 511 ************************************************************ consensus_7027#0 GGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC 890 consensus_7027#1 GGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC 561 ************************************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||