These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7035#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 769 fasta sequence [CAGCTTCAATCACATGTTTCAGTGGTTATGTCTGAACGAGTTCAGTCTATAGCTTCTGGTATATACAAAGAGTTTGAAACTATGATTGAGGCTTATGGATTACCCGTTGTTGAGCGTTTAATGCCATTAATAATTAGCCTGCTGGAAAATTTGGATGAACTATATAAAGATCAATCTGCATACCATGCTGAAGTAAGACAATTACGTGAAGAGAATGAGCATATTTATGACCAACTTACTGCTGAAAAGGCTGCTCGAAAACAGTCCGAACTGCGTTTGCTAAATGCAGAGGATGCTTTTGATGAAGAGAGAAAAGTGAATGAGGCAAAAAATGAGTCATTATTCACATCTTGTCGGCAAACGGAATTGAGACTTCAATTGGCTAAAGATCAAGTTTCACGTTTAGAAGTGAAAGAACAAGAATGGAAAAAGGAAGAGAATCGTTTACATGAACATCTTAATGAATTAATACGTTCTAATGTTGAATTAACTGAACAAATCAAATTTATTAATAATAATAATCAAGATCAATCAAGAAATACATTAAATAATCATATTCATAAACATTCACCACGTAAACTATCCATGAATTCACCTAAATATAATNTAACTGGATCAACTAATCATGATCAAAGTTCAACAATAGATGGATCATCTATAGTTCATTCAAATTCACTTGGGTGTTGGCTATGATGCTACTAGAATGAATTNGACATTTTTCGGATATTTTTCCCGTTATTTACAGTGGATTTGAGGTTGATGAACTCCC] [+] EMBL CD119718 [CAGCTTCAATCACATGTTTCAGTGGTTATGTCTGAACGAGTTCAGTCTATAGCTTCTGGTATATACAAAGAGTTTGAAACTATGATTGAAGCTT TGGAT ] [+] EMBL CD119709 [ CAGTGGTTATGTCTGAACGAGTTCAGTCTATAGCTTCTGGTATATACAAAGAGTTTGAAACTATGATTGAGGCTTATGGATTACCCGTTGTTGAGCGTTTAATGCCATTAATAATTAGCCTGCTGGAAAATTTGGATGAACTATATAAAGATCAATCTGCATACCATGCTGAAGTAAGACAATTACGTGAAGAGAATGAGCATATTTATGACCAACTTACTGCTGAAAAGGCTGCTCGAAAACAGTCCGAACTGCGTTTGCTAAATGCAGAGGATGCTTTTGATGAAGAGAGAAAAGTGAATGAGGCAAAAAATGAGTCATTATTCACATCTTGTC ] [+] EMBL CD118475 [ GTCTGAACGAGTTCAGTCTATAGCTTCTGGTATATACAAAGAGTTTGAAACTATGATTGAGGCTTATGGATTACCCGTTGTTGAGCGTTTAATGCCATTAATAATTAGCCTGCTGGAAAATTTGGATGAACTATATAAAGATCAATCTGCATACCATGCTGAAGTAAGACAATTACGTGAAGAGAATGAGCATATTTATGACCAACTTACTGCTGAAAAGGCTGCTCGAAAACAGTCCGAACTGCGTTTGCTAAATGCAGAGGATGCTTTTGATGAAGAGAGAAAAGTGAATGAGGCAAAGAATGAGTCATTATTCACATCTTGTCGGCAAACGGAATTGAGACTTCAATTGGCTAAAGATCAAGTTTCACGTTTAGAAGTGAAAGAACAAGAATGGAAAAAGGAAGAGAATCGTTTACATGAACATCTTAATGAATTAATACGTTCTAATGTTGAATTAACTGAACAAATCAAATTTATTAATAATAATAATCAAGATCAATCAAGAAATACATTAAATAATCATATTCATAAACATTCACCACGTAAACTATCCATGAATTCACCTAAATATAATNTAACTGGATCAACTAATCATGATCAAAGTTCAACAATAGATGGATCATCTATAGTTCATTCAAATTCACTTGGGTGTTGGCTATGATGCTACTAGAATGAATTNGACATTTTTCGGATATTTTTCCCGTTATTTACAGTGGATTTGAGGTTGATGAACTCCC] consensusID : consensus_7035#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence [ATGGATCATCTATAGTTCATTCAAATTCACTTGGTGTTGGCTATGATGCTACTAGCGGTGGATTTGAGTTTTGATGAACTCCCAAATACTTTGGAGTCGGAAAGTGGTGGTTTAAATGTCGACGATGATCTACCTGCTGGTATGCGTAAAGAGATT] [+] EMBL CD162238 [ATGGATCATCTATAGTTCATTCAAATTCACTTGGTGTTGGCTATGATGCTACTAGCGGTGGATTTGAGTTTTGATGAACTCCCAAATACTTTGGAGTCGGAAAGTGGTGGTTTAAATGTCGACGATGATCTACCTGCTGGTATGCGTAAAGAGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7035#0 CAGCTTCAATCACATGTTTCAGTGGTTATGTCTGAACGAGTTCAGTCTATAGCTTCTGGT 60 consensus_7035#1 ------------------------------------------------------------ consensus_7035#0 ATATACAAAGAGTTTGAAACTATGATTGAGGCTTATGGATTACCCGTTGTTGAGCGTTTA 120 consensus_7035#1 ------------------------------------------------------------ consensus_7035#0 ATGCCATTAATAATTAGCCTGCTGGAAAATTTGGATGAACTATATAAAGATCAATCTGCA 180 consensus_7035#1 ------------------------------------------------------------ consensus_7035#0 TACCATGCTGAAGTAAGACAATTACGTGAAGAGAATGAGCATATTTATGACCAACTTACT 240 consensus_7035#1 ------------------------------------------------------------ consensus_7035#0 GCTGAAAAGGCTGCTCGAAAACAGTCCGAACTGCGTTTGCTAAATGCAGAGGATGCTTTT 300 consensus_7035#1 ------------------------------------------------------------ consensus_7035#0 GATGAAGAGAGAAAAGTGAATGAGGCAAAAAATGAGTCATTATTCACATCTTGTCGGCAA 360 consensus_7035#1 ------------------------------------------------------------ consensus_7035#0 ACGGAATTGAGACTTCAATTGGCTAAAGATCAAGTTTCACGTTTAGAAGTGAAAGAACAA 420 consensus_7035#1 ------------------------------------------------------------ consensus_7035#0 GAATGGAAAAAGGAAGAGAATCGTTTACATGAACATCTTAATGAATTAATACGTTCTAAT 480 consensus_7035#1 ------------------------------------------------------------ consensus_7035#0 GTTGAATTAACTGAACAAATCAAATTTATTAATAATAATAATCAAGATCAATCAAGAAAT 540 consensus_7035#1 ------------------------------------------------------------ consensus_7035#0 ACATTAAATAATCATATTCATAAACATTCACCACGTAAACTATCCATGAATTCACCTAAA 600 consensus_7035#1 ------------------------------------------------------------ consensus_7035#0 TATAATNTAACTGGATCAACTAATCATGATCAAAGTTCAACAATAGATGGATCATCTATA 660 consensus_7035#1 ----------------------------------------------ATGGATCATCTATA 14 ************** consensus_7035#0 GTTCATTCAAATTCACTTGGGTGTTGGCTATGATGCTACTAG-AATGAATTNGACATTT- 718 consensus_7035#1 GTTCATTCAAATTCACTTGG-TGTTGGCTATGATGCTACTAGCGGTGGATTTGAGTTTTG 73 ******************** ********************* ** *** ** *** consensus_7035#0 -------TTCGGATATTTTTCCCGTTATTTACAGTGGATTTGAGGTTGATGAACTCCC-- 769 consensus_7035#1 ATGAACTCCCAAATACTTTGGAGTCGGAAAGTGGTGGTTTAAATGTCGACGATGATCTAC 133 * *** *** **** ** * ** ** ** * consensus_7035#0 ----------------------- consensus_7035#1 CTGCTGGTATGCGTAAAGAGATT 156 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||