These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7061#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1008 fasta sequence [GGATTCGTTCAAAGGCAAACTTATTTTCAAATATTCAACTCGTGTAGTTCAACTGTTTTAATTCATGGCTTCATTTGCGGTTCATTATTTCGTCATTGGATTGATTTTAGCCATTGTAGGCACATTTTCTATAAGCTACCTAATTTCGACATCAGACCATCATGCGTCTGTTATCTTTCCATACATAAGTGATACTGGTGCTCTACCGCCTGAAAGCTGCGTATTTGGTCAACTGCTCAATATATGTTCGTTTCTTTCTTTTGTATGTATTTATTGTTGGTATCTACATGAGTGCAATGTAATGTACACACTTCAAGGACCTAACTCTCACATTGTTTTTGCACGTCTTACTTGCATCATTGGCTGTCTAAGCGCACTGGGAATGTCGATTGTAGCTAATTTCCAGGAAGCATCTTTAATAGTTGTTCATTTAATCGGTGCAATGATGACTTTCGGATTGGGAGTCGTATTTTCAGCGTTAGTCACCTATTCTACACGTAAACATTTGGAATACAATTTCAAAATATATGTATTCCGTTTAATCTTAACTATTTGCGGTTTTCTCGCGAATCTGGGAGTGTTCATTNTTGGGCATTTATCTGGGGAAATCCACGGTCCATTCCCTAGAAAATGGGATCCATCTGAAACGGGTTNTAAATATCATGTAATGAGTAGCTTTTGCGAATGGTTAATGTCCTTCACATTTTTACTGTTTTTCGCTTCTATGATATTCGAATTGAGAAACTATGAGTTGGAATCGGTTAAAATAAGGCGCATAGTTATCGCGCCTGAAAACAATGAACAAGCACCTCTACTCGCTTAGGCCATCACTTTCTGTTCTTATGTGACTATAATTCAGTGAATAAGAAAATACTTTGATCCATTTCATTAGGACTACAATTTTTTATCATACTACGTAACAGTCATCTTTTTTACTTAATACACTATGTAATCTATTTCTTTATGTTGATTTTGTGATTTTTTTTCTACTTTTATCGGAAGAACAAA] [+] EMBL CD082469 [GGATTCGTTCAAAGGCAAACTTATTTTCAAATATTCAACTCGTGTAGTTCAACTGTTTTAATTCATGGCTTCATTTGCGGTTCATTATTTCGTCATTGGATTGATTTTAGCCATTGTAGGCACATTTTCTATAAGCTACCTAATTTCGACATCAGACCATCATGCGTCTGTTATCTTTCCATACATAAGTGATACTGGTGCTCTACCGCCTGAAAGCTGCGTATTTGGTCAACTGCTCAATATATGTTCGTTTCTTTCTTTTGTATGTATTTATTGTTGGTATCTACATGAGTGCAATGTAATGTACACACTTCAAGGACCTAACTCTCACATTGTTTTTGCACGTCTTACTTGCATCATTGGCTGTCTAAGCGCACTGGGAATGTCGATTGTAGCTAATTTCCAGGAAGCATCTTTAATAGTTGTTCATTTAATCGGTGCAATGATGACTTTCGGATTGGGAGTCGTATTTTCAGCGTTAGTCACCTATTCTACACGTAAACATTTGGAATACAATTTCAAAATATATGTATTCCGTTTAATCTTAACTATTTGCGGTTTTCTCGCGAATCTGGGAGTGTTCATTNTTGGGCATTTATCTGGGGAAATCCACGGTCCATTCCCTAGAAAATGGGAT ] [+] EMBL AI977634 [ TGATTTTAGCCATTGTAGGCACATTTTCTATAAGCTACCTAATTTCGACATCAGACCATCATGCGTCTGTTATCTTTCCATACATAAGTGATACTGGTGCTCTACCGCCTGAAAGCTGCGTATTTGGTCAACTGCTCAATATATGTTCGTTTCTTTCTTTTGTATGTATTTATTGTTGGTATCTACATGAGTGCAATGTAATGTACACACTTCAAGGACCTAACTCTCACATTGTTTTTGCACGTCTTACTTGCATCATTGGCTGTCTAAGCGCACTGGGAATGTCGATTGTAGCTAATTTCCAGGAAGCATCTTTAATAGTTGTTCATTTAATCGGTGCAATGATGACTTTCGGATTGGGAGTCGTATTTTCAGCGTTAGTCACCTATTCTACACGTAAACATTTGGAATACAATTTCAAAATATATGTATTCCGTTTAATCTTAACTATTTGCGGTTTTCTCGCGAATCTGGGAGTGTTCATTNTTGGGCATTTATCTGGNGAAATCCACGGTCCATTCCCTAGAAAATGGGATCCATCTGAAACGGGTTNTAAATATCATGTAATGAGTAGCTTTTG ] [-] EMBL CD076068 [ TAATCGGTGCAATGATGACTTTCGGATTGGGAGTCGTATTTTCAGCGTTAGTCACCTATTCTACACGTAAACATTTGGAATACAATTTCAAAATATATGTATTCCGTTTAATCTTAACTATTTGCGGTTTTCTCGCGAATCTGGGAGTGTTCATTTTTGGGCATTTATCTGGGGAAATCCACGGTCCATTCCCTAGAAAATGGGATCCATCTGAAACGGGTTTTAAATATCATGTAATGAGTAGCTTTTGCGAATGGTTAATGTCCTTCACATTTTTACTGTTTTTCGCTTCTATGATATTCGAATTGAGAAACTATGAGTTGGAATCGGTTAAAATAAGGCGCATAGTTATCGCGCCTGAAAACAATGAACAAGCACCTCTACTCGCTTAGGCCATCACTTTCTGTTCTTATGTGACTATAATTCAGTGAATAAGAAAATACTTTGATCCATTTCATTAGGACTACAATTTTTTATCATACTACGTAACAGTCATCTTTTTTACTTAATACACTATGTAATCTATTTCTTTATGTTGATTTTGTGATTTTTTTTCTACTTTTATCGGAAGAACAAA] consensusID : consensus_7061#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [TAGGACAAAAAAATACAATTATAACTTATATGTGTTTGTTATTTTGCTTGGTTATAGATTTCTAAAACAAATACTTTATATTGAAGTTAGATTAATATTTACGCATAATATTCTGATCTACATATCTATTCACCTTTCATAGCGACTGATCATTCCAATCAAACGAAATTTATGTAACGTCAAAATGTAACCCTGATAACTATATTTCACTATATATATATCATTCACAGACTAATATTTGATAGTTCTCTATAGTTATAGACAAATGAGTACTATGTATTATTCCACATTTCATAAATGGTGGTTTTCTAATCTGTAATCCATTAGTGTGATTCATTTGTTTGCCTATAATTCGTAAATTGTTTCCATGCTTTTATTTGGATTTTTGTGTTATCCATGTGAAGCGATTCTCTTGGACTTTTTAAATTAGCCGTTATATGTTTTTAAATTTTGTTTTGTAACTCAGTGATACTGGTGCTCTACCGCCTGAAAGCTGCGTATTTGGTCAACTGCTCAATATATGTTCGTTTCTTTCTTTTGTATGTATCTATTGTTGGTATCTACATGAGTGCAATGTAATGTACACACTTCAAGGACCTAACTCTCACATTGCTTTTGCACGTCTTACATGCATCA] [-] EMBL CD062159 [TAGGACAAAAAAATACAATTATAACTTATATGTGTTTGTTATTTTGCTTGGTTATAGATTTCTAAAACAAATACTTTATATTGAAGTTAGATTAATATTTACGCATAATATTCTGATCTACATATCTATTCACCTTTCATAGCGACTGATCATTCCAATCAAACGAAATTTATGTAACGTCAAAATGTAACCCTGATAACTATATTTCACTATATATATATCATTCACAGACTAATATTTGATAGTTCTCTATAGTTATAGACAAATGAGTACTATGTATTATTCCACATTTCATAAATGGTGGTTTTCTAATCTGTAATCCATTAGTGTGATTCATTTGTTTGCCTATAATTCGTAAATTGTTTCCATGCTTTTATTTGGATTTTTGTGTTATCCATGTGAAGCGATTCTCTTGGACTTTTTAAATTAGCCGTTATATGTTTTTAAATTTTGTTTTGTAACTCAGTGATACTGGTGCTCTACCGCCTGAAAGCTGCGTATTTGGTCAACTGCTCAATATATGTTCGTTTCTTTCTTTTGTATGTATCTATTGTTGGTATCTACATGAGTGCAATGTAATGTACACACTTCAAGGACCTAACTCTCACATTGCTTTTGCACGTCTTACATGCATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7061#0 GGATTCGTTCAAAGGCAAACTTATTTTCAAATATTCAACTCGTGTAGTTCAACTGTTTTA 60 consensus_7061#1 ----------TAGGACAAAAAAATACAATTATAACTTATATGTGTTTGTTATTTTGCTTG 50 * * **** ** *** * **** * * * ** consensus_7061#0 ATTCATGGCTTCATTTGCGGTT-CATTATTTCGTCATTGGATTGAT-TTTAGCCATTGTA 118 consensus_7061#1 GTTATAGATTTCTAAAACAAATACTTTATATTGAAGTTAGATTAATATTTACGCATAATA 110 ** * *** * * * **** * * ** **** ** **** *** ** consensus_7061#0 GGCACATTTTCTATAAGCTACCTAATTTCGACATCAGACCATCATGCGTCTGTTATCTTT 178 consensus_7061#1 TTCTGATCTAC-ATAT-CTATTCACCTTTCATAGCGACTGATCATTC-----CAATCAAA 163 * ** * * *** *** * ** * * * ***** * *** consensus_7061#0 CCATACATAAGTGATACTGGTGCTCTACCGCCTGAAAGCTGCGTATTTGGTCAACTGCTC 238 consensus_7061#1 CGAAATTTATGTAACGTCAAAATGTAAC--CCTGATAACT--ATATTTCACTATATATAT 219 * * * ** ** * ** ***** * ** ***** * * consensus_7061#0 AATATATGTTCGTTTCTTTCTTTTGTATGTATTTATTGTTGGTATCTACATGAGTGCAAT 298 consensus_7061#1 ATCATTCACAGACTAATAT--TTGATAGTTCTCTATAGTTA-TAGACAAATGAGTACTAT 276 * ** * * * ** ** * * *** *** ** * ****** * ** consensus_7061#0 GTAATGTAC-ACACTTCAAGGACCTAACTCTCACATTGTTTTTGCACGTCTTACTTGCAT 357 consensus_7061#1 GTATTATTCCACATTTCA------TAAATGGTGGTTTTCTAATCTGTAATCCATTAGTGT 330 *** * * * *** **** *** * ** * * * * * * consensus_7061#0 CATTGGCTGTCTAAGCGCACTGGGAATGTCGATTGTAGCTAATTTCCAGGAAGCATCTTT 417 consensus_7061#1 GATT---CATTTGTTTGCCTATAATTCGTAAATTGTTTCCATGCTTTTATTTGGATTTTT 387 *** * * ** ** ***** * * * * ** *** consensus_7061#0 AATAGTTGTTCATTT-AATCGGTGCAATGATGACTTTCGGATTGGGAGTCGTATTTTCAG 476 consensus_7061#1 GT--GTTATCCATGTGAAGCGATTCTCTTGGACTTTTTAAATTAGCCGTTATATGTTTTT 445 *** * *** * ** ** * * * *** *** * ** *** ** consensus_7061#0 CGTTAGTCACCTATTCTACACGTAAACATTTGGAATACAATTTCAAAATATATGTATTCC 536 consensus_7061#1 AAATTTTGTTTTGTAACTCAGTGATACTGGTGCTCTACCGCCTGAAAGC-TGCGTATTTG 504 * * * * ** * ** ** *** * *** * ***** consensus_7061#0 GTTTAATCTTAACTATTTGCGGTTTTCTCGCGAATCTGGGAGTGTTCATTNTTGGGCATT 596 consensus_7061#1 GTCAACTGCTCAATATATGTTCGTTTCTTTCT--TTTGTATGTATCTATTGTTGG-TATC 561 ** * * * * *** ** ***** * * ** ** * *** **** ** consensus_7061#0 TATCTGGG-GAAATCCACGGTCCATTCCCTAGAAAATGGGATCCATCTGAAACGGGTTNT 655 consensus_7061#1 TACATGAGTGCAATGTAATGTACACACTTCAAGGACCTAACT----CTCACATTGCTTTT 617 ** ** * * *** * ** ** * * * * ** * * * ** * consensus_7061#0 AAATATCATGTAATGAGTAGCTTTTGCGAATGGTTAATGTCCTTCACATTTTTACTGTTT 715 consensus_7061#1 GCACGTCTTACATGCATCA----------------------------------------- 636 * ** * * * * consensus_7061#0 TTCGCTTCTATGATATTCGAATTGAGAAACTATGAGTTGGAATCGGTTAAAATAAGGCGC 775 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 ATAGTTATCGCGCCTGAAAACAATGAACAAGCACCTCTACTCGCTTAGGCCATCACTTTC 835 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 TGTTCTTATGTGACTATAATTCAGTGAATAAGAAAATACTTTGATCCATTTCATTAGGAC 895 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 TACAATTTTTTATCATACTACGTAACAGTCATCTTTTTTACTTAATACACTATGTAATCT 955 consensus_7061#1 ------------------------------------------------------------ consensus_7061#0 ATTTCTTTATGTTGATTTTGTGATTTTTTTTCTACTTTTATCGGAAGAACAAA 1008 consensus_7061#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||