These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 437 fasta sequence [GTTTCTACTAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATTCTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAAGTGAAAATATAAGGAGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAAAATCAGGGACTAAAG-GTG-CTGGCTATGAGATATGTGATGTG-TATGTCAGGGCTAGTG-AG-TAGCTATTTTCCAATGGACTGAGAATGCATGCCCCTAAGGAATACTAATCTTTATATCTCTCTAGTGCTGGGATTAAAAAATGCACTGGATCTGTTACTCTATTACACTTATTCAGTTTTGTGCATCCCAGGGTGTACTTGATCAAAGAGAAATCTGTCTACCTCTTAATGTTGAGCCCTAGGATCAAAGGTGTGAAC] [+] EMBL AI026165 [GTTTCTACTAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATTCTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAAGTGAAAATATAAGGAGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAAAATCAGGGACTAAAG GTG CTGGCTATGAGATATGTGATGTG TATGTCAGGGCTAGTG AG TAGCTATTTTCCAATGGACTGAGAATGCATGCCCCTAAGGAATACTAATCTTTATATCTCTCTAGTGCTGGGATTAAAAAATGCACTGGATCTGTTACTCTATTACACTTATTCAGTTTTGTGCATCCCAGGGTGTACTTGATCAAAGAGAAATCTGTCTACCTCTTAATGTTGAGCCCTAGGATCAAAGGTGTGAAC] [+] EMBL AI026173 [GTTTCTACTAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATTCTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAAAAGAAAATAAAAGGAGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTAAATCTGAAAATCAGGGACTAAAA ATA ATGACTATGAGATATGTGATGAGATATGTCAGGGCTAATG AG TAGCTATTTTCCAATGGACTGAGAATGCATNCCCCTAAGGAATACT ] [+] EMBL AI740433 [GTTTCTACCAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATTCTTCTTGCTAGGGTTCCCGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAAGTGAAAATATAAGGAGAATTAATTAAAACCCAAGACAGAGATATTTGAGTTTAATCTGAAAATCAGGGACTAAAGTTTGTCTGGCTAAGAGATATGTGATGTG GATGTCAGGGCTAGTGAAGTTAGCTATTTTCCAATGGAC ] consensusID : consensus_7068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [TAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATTCTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAACCGAAAATCTAAGGGGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAAAATCAGGGACTAAGTTTTGCCGGCTATGAGAAATGTGATGTGCTATGTCAGGGCTAGTGAGTAGCCATTTTCCAATGGACTGAGAATGCATGCCCCTAAGGGAGTACTAATCCTTCCCCCCCCCGAGTGCTGGGATTAAAAAATGCCCTGGATCTGTTACTCTATTACCCCTAATCAGTTTGGGGCCTCCCAGGGGGTACTGGATCAAAGAGAAATCCGCCAACCC] [+] EMBL AI740404 [TAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATTCTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAACCGAAAATCTAAGGGGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAAAATCAGGGACTAAGTTTTGCCGGCTATGAGAAATGTGATGTGCTATGTCAGGGCTAGTGAGTAGCCATTTTCCAATGGACTGAGAATGCATGCCCCTAAGGGAGTACTAATCCTTCCCCCCCCCGAGTGCTGGGATTAAAAAATGCCCTGGATCTGTTACTCTATTACCCCTAATCAGTTTGGGGCCTCCCAGGGGGTACTGGATCAAAGAGAAATCCGCCAACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7068#0 GTTTCTACTAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATT 60 consensus_7068#1 --------TAGGAGATAGTAACATTTTAGAGTAATCCAGGAACAGCAATTGGGGAGGATT 52 **************************************************** consensus_7068#0 CTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAA 120 consensus_7068#1 CTTCTTGCTAGGGTTCCTGTCTAGATTCAGAACAGCTGGGAAAGATACACAGGCTTCAAA 112 ************************************************************ consensus_7068#0 GTGAAAATATAAGGAGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAA 180 consensus_7068#1 CCGAAAATCTAAGGGGAATTAATTAAAACCCAAGAGAGAGATATTTGAGTTTAATCTGAA 172 ****** ***** ********************************************* consensus_7068#0 AATCAGGGACTAAAGGT-GCTGGCTATGAGATATGTGATGTG-TATGTCAGGGCTAGTGA 238 consensus_7068#1 AATCAGGGACTAAGTTTTGCCGGCTATGAGAAATGTGATGTGCTATGTCAGGGCTAGTGA 232 ************* * ** ********** ********** ***************** consensus_7068#0 GTAGCTATTTTCCAATGGACTGAGAATGCATGCCCCTAAGGAA-TACTAATCTTTATATC 297 consensus_7068#1 GTAGCCATTTTCCAATGGACTGAGAATGCATGCCCCTAAGGGAGTACTAATCCTTCCCCC 292 ***** *********************************** * ******** ** * consensus_7068#0 TCTCTAGTGCTGGGATTAAAAAATGCACTGGATCTGTTACTCTATTACACTTATTCAGTT 357 consensus_7068#1 CCCCGAGTGCTGGGATTAAAAAATGCCCTGGATCTGTTACTCTATTACCCCTAATCAGTT 352 * * ********************* ********************* * ** ****** consensus_7068#0 TTGTGCATCCCAGGGTGTACTTGATCAAAGAGAAATCTGTCTACCTCTTAATGTTGAGCC 417 consensus_7068#1 TGGGGCCTCCCAGGGGGTACTGGATCAAAGAGAAATCCGCCAACCC-------------- 398 * * ** ******** ***** *************** * * *** consensus_7068#0 CTAGGATCAAAGGTGTGAAC 437 consensus_7068#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||