cluster # 7077

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Schistosoma mansoni
cluster # 7077 cluster # 7077 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7077#0 length = 385 sequences # 1

consensus_7077#1 length = 372 sequences # 3

consensusID : consensus_7077#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [AATAGGGTAATAGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAAATACAACACGCATTCATATAAATGCAAAAAAAGAATCTGAAAGCAGATGCTTGAGCGGAAAGCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAGAATAACCATTAAGCGGGTTGAAGCTCCGAAATTGTCGAAGGAGTATTTAGCGTTGACGGCTGCGAAGAATAAAATTTGGCGCCCAACTGAACAATGATCAGCAAAACACTGCAATTCCTAATAAAGCGAAAGTGAACACAACTGAGATATTTTCAAGCGCTGATCGATGTTGAAGCGTGTCTTGGTGAACTGACTGCTGCTGTAT]

[+] EMBL CD120151             [AATAGGGTAATAGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAAATACAACACGCATTCATATAAATGCAAAAAAAGAATCTGAAAGCAGATGCTTGAGCGGAAAGCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAGAATAACCATTAAGCGGGTTGAAGCTCCGAAATTGTCGAAGGAGTATTTAGCGTTGACGGCTGCGAAGAATAAAATTTGGCGCCCAACTGAACAATGATCAGCAAAACACTGCAATTCCTAATAAAGCGAAAGTGAACACAACTGAGATATTTTCAAGCGCTGATCGATGTTGAAGCGTGTCTTGGTGAACTGACTGCTGCTGTAT]




>consensus_7077#0
AATAGGGTAATAGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAAA
TACAACACGCATTCATATAAATGCAAAAAAAGAATCTGAAAGCAGATGCTTGAGCGGAAA
GCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAG
AATAACCATTAAGCGGGTTGAAGCTCCGAAATTGTCGAAGGAGTATTTAGCGTTGACGGC
TGCGAAGAATAAAATTTGGCGCCCAACTGAACAATGATCAGCAAAACACTGCAATTCCTA
ATAAAGCGAAAGTGAACACAACTGAGATATTTTCAAGCGCTGATCGATGTTGAAGCGTGT
CTTGGTGAACTGACTGCTGCTGTAT

consensusID : consensus_7077#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 372
fasta sequence

                              [ATAGGGTAATTGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAATACAACACGCATTCATATAAAGCTAAAAAAAGATCTGAAAGCAGAGCTTGAGCGGAAAGCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAGATCACCATTAAGCGGGTTGAAGCTCCG-AAATTGTCGAAGGAGTATTTAGCGTTGACGGCTGCGACGAATAAATTTGGCGCCCAACTGAACATGATCAGCAAACACTGCAATTCCTATAAAAGCGACAGTGACACACTGAG-AATTTTTCAAGCGCTGATCGATGTTGAGCGTGGTCTTGGTGAACTGACTGCTGCTG]

[+] EMBL CD120096             [ATAGGGTAATTGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTATTCAATACAACACGCATTCATATAAAGCTAAAAAAAGATCTGAAAGCATAGCTTGAGCGGAAAGCCGCTGGCAATTACATGTCGCTCAGACAGCTACTGTGGCAAAGTGCTCGCACATCGCTGATCACCATTAAGCGGGTTGAAGCTCCG AAATTGTCGAAGGAGTATTTAGCGTTGACGGCTGCGACGAATAAATATGGCGCCCAACTGACCATGATCAGCAAACACTGCGATTCCTATAAAAGCGACAGGGACACACTGGGCAATTTTTCATGCGCTGATCGATGTTGAGCGTGGACTAGGTGAACTGACTGCTGCTG]
[+] EMBL CD120086             [ATAGGGTAATAGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAATACAACACGCATTCATATAAAGCTAAAAAAAGATCTGAAAGCAGAGCTTGAGCGGAAAGCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAGATCACCATTAAGCGGGTTGAAGCTCCG AAATTGTCGAAGGAGTATTTAGCGTTGACGGCTGCGACGAATAAATTTGGCGCCCAACTGAACATGATCAGCAAACACTGCAATTCCTATAAAAGCGACAGTGACACACTGAG AATTTTTCAAGCGCTGATCGATGTTGTGCGTGGTCTTGCAGAACTGACTGCTGCTG]
[+] EMBL CD120462             [                                               CCCGTAATCAATACAACACGCATTCATATAAAGCTAAAAAAAGATCTGAAAGCAGAGCTTGAGCGGAAAGCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAGATCACCATTAAGCGGGTTGAAGCTCCGTGAATTGTCGAAGGAGTTTTTAGCGTTGACGGCTGCGACGAATANATTTGGCGCCCAACTGAACATGATCAGCAAACACTGCAATTCCTATAANAGCGACAGTGACACACTGAG AATTTTTCAAGCGCTGATCGATGTTGAGCGTGGTCTTGGTGAACTGACTGCTGCTG]




>consensus_7077#1
ATAGGGTAATTGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAATA
CAACACGCATTCATATAAAGCTAAAAAAAGATCTGAAAGCAGAGCTTGAGCGGAAAGCCG
CTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAGATCA
CCATTAAGCGGGTTGAAGCTCCGAAATTGTCGAAGGAGTATTTAGCGTTGACGGCTGCGA
CGAATAAATTTGGCGCCCAACTGAACATGATCAGCAAACACTGCAATTCCTATAAAAGCG
ACAGTGACACACTGAGAATTTTTCAAGCGCTGATCGATGTTGAGCGTGGTCTTGGTGAAC
TGACTGCTGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7077#0      AATAGGGTAATAGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAAA 60
consensus_7077#1      -ATAGGGTAATTGTCATGAGTGAAGTAGTAACAAAAAAGAAGAAAGCGCCCGTAATCAA- 58
                       ********** *********************************************** 

consensus_7077#0      TACAACACGCATTCATATAAATGCAAAAAAAGAATCTGAAAGCAGATGCTTGAGCGGAAA 120
consensus_7077#1      TACAACACGCATTCATATAAA-GCTAAAAAAAGATCTGAAAGCAGA-GCTTGAGCGGAAA 116
                      ********************* ** ******  ************* *************

consensus_7077#0      GCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAG 180
consensus_7077#1      GCCGCTGACAATTACATGTCGCTCAGTCAGCTACTGTTGCAAAGTGCGCGCACATCGCAG 176
                      ************************************************************

consensus_7077#0      AATAACCATTAAGCGGGTTGAAGCTCCGAAATTGTCGAAGGAGTATTTAGCGTTGACGGC 240
consensus_7077#1      A-TCACCATTAAGCGGGTTGAAGCTCCGAAATTGTCGAAGGAGTATTTAGCGTTGACGGC 235
                      * * ********************************************************

consensus_7077#0      TGCGAAGAATAAAATTTGGCGCCCAACTGAACAATGATCAGCAAAACACTGCAATTCCTA 300
consensus_7077#1      TGCGACGAATAAA-TTTGGCGCCCAACTGAACA-TGATCAGCAAA-CACTGCAATTCCTA 292
                      ***** ******* ******************* *********** **************

consensus_7077#0      ATAAAGCGAAAGTGAACACAACTGAGATATTTTCAAGCGCTGATCGATGTTGAAGCGTGT 360
consensus_7077#1      TAAAAGCGACAGTGA-CACA-CTGAGAATTTTTCAAGCGCTGATCGATGTTGAGCGTGGT 350
                        ******* ***** **** ******  ************************     **

consensus_7077#0      CTTGGTGAACTGACTGCTGCTGTAT 385
consensus_7077#1      CTTGGTGAACTGACTGCTGCTG--- 372
                      **********************