These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7081#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 481 fasta sequence [GTCTTTTCTAGAAGGACCCCCTNTCCGGTGGTCCTTATCAATGATAATCGCGTTTGGGCTTACTACCTAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGGGATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATCGCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCATTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAACTTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACCACTACCAATAGTTGTTGTCCCTTCCAAACTGAAGTGTATTCATCACCACTCTCGAAATCATTCGCTACATGCTCTTCCAAAAATGATAATAATCACATAAAACAAACATCCATACCCTTA] [+] EMBL CD062326 [GTCTTTTCTAGAAGGACCCCCTNTCCGGTGGTCCTTATCAATGATAATCGCGTTTGGGCTTACTACCTAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGGGATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATCGCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCATTACAGTCTCAAATTAATTATATACGCAAATTAGTTAGTAATAGTTAAAGGCAAATAAACTTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACCACTACCAATAGTTGTTGTCCCTTCCAAACTGAAGTGTATTCATCACCACTCTCGAAATCATTCGCTACATGCTCTTCCAAAAATGATAATAATCACATAAAACAAACATCCATACCCTT ] [-] EMBL CD062292 [ AATCGCGTTTGGGCTTACTACCTAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAATCACGGAGTGGACATCAATTCTGGGATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATCGCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCATTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAACTTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACCACTACCAATAGTTGTTGTCCCTTCCAAACTGAAGTGTATTCATCACCACTCTCGAAATCATTCGCTACATGCTCTTCCAAAAATGATAATAATCACATAAAACAAACATCCATACCCTTA] [-] EMBL CD062345 [ TCGCGTTTGGGCTTACTACCTAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGGGATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATCGCATAACCTCGGAAATAATAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCATTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAACTTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACCACTACCAATAGTTGTTGTCCTTTCCAAACTGAAGTGTATTCATCACCACTCTCGAAATCATTCGCTACATGCTCTTCCGAAAATGATAATAATCACATAAAACAAACATCCATACCCTTA] consensusID : consensus_7081#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [TAGTCCTATTTCTGACTTGCCAGGTGGATGTAATTGCATCCCGTAGTTGATGTTCACTCTCGAATTCGAACCCGGTAGCGTCCTCATCAATGATAATCGCGTTTGGGCTTACTACCTAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGGGATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATCGCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCATTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAACTTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACC] [-] EMBL CD067634 [TAGTCCTATTTCTGACTTGCCAGGTGGATGTAATTGCATCCCGTAGTTGATGTTCACTCTCGAATTCGAACCCGGTAGCGTCCTCATCAATGATAATCGCGTTTGGGCTTACTACCTAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGGGATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATCGCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCATTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAACTTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7081#0 ---------------------------------------------------GTCTTTTCT 9 consensus_7081#1 TAGTCCTATTTCTGACTTGCCAGGTGGATGTAATTGCATCCCGTAGTTGATGTTCACTCT 60 ** *** consensus_7081#0 AGAAGGACCCCCTNTCCGGTGG--TCCTTATCAATGATAATCGCGTTTGGGCTTACTACC 67 consensus_7081#1 CGAA----TTCGAACCCGGTAGCGTCCTCATCAATGATAATCGCGTTTGGGCTTACTACC 116 *** * ***** * **** ******************************* consensus_7081#0 TAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGG 127 consensus_7081#1 TAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGG 176 ************************************************************ consensus_7081#0 GATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATC 187 consensus_7081#1 GATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATC 236 ************************************************************ consensus_7081#0 GCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCA 247 consensus_7081#1 GCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCA 296 ************************************************************ consensus_7081#0 TTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAAC 307 consensus_7081#1 TTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAAC 356 ************************************************************ consensus_7081#0 TTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACCACTACC 367 consensus_7081#1 TTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACC------ 410 ****************************************************** consensus_7081#0 AATAGTTGTTGTCCCTTCCAAACTGAAGTGTATTCATCACCACTCTCGAAATCATTCGCT 427 consensus_7081#1 ------------------------------------------------------------ consensus_7081#0 ACATGCTCTTCCAAAAATGATAATAATCACATAAAACAAACATCCATACCCTTA 481 consensus_7081#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||