cluster # 7108

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Schistosoma mansoni
cluster # 7108 cluster # 7108 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7108#0 length = 438 sequences # 3

consensus_7108#1 length = 324 sequences # 1

consensusID : consensus_7108#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 438
fasta sequence

                              [TAAACTGTCCAAAGCCCTCATGAATTCCCCTGGATAACGGTAGGCCAGTAATTTGGTTAAACTCCTCAAACAAGCTAGACACTGACGTGAAAATCCTGAACCCAAAACGGTAGTATGTTTTGTCCTCAGGGAACCATCCATCTTGCCACTTTTCAAATTATAGAATGAAATTAGCTTCCCAGTGAACTGAACTAAACCAGCCTCCATAGTACGATTCAGATCAACAAAATTTCGGCTAACTAAATGTTTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAAATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTAGCAGATAATAAGTCGAGAGCTTTACGACGAAGCCCACGGTTTTCACAGGAGAATAAATCCAAGATCATGGAGATGAATACTCGACCAGGGACTGAGTC]

[+] EMBL CD098415             [TAAACTGTCCAAAGCCCTCATGAATTCCCCTGGATAACGGTAGGCCAGTAATTTGGTTAAACTCCTCAAACAAGCTAGACACTGACGTGAAAATCCTGAACCCAAAACGGTAGTATGTTTTGTCCTCAGGGAACCATCCATCTTGCCACTTTTCAAATTATAGAATGAAATTAGCTTCCCAGTGAACTGAACTAAACCAGCCTCCATAGTACGATTCAGATCAACAAAATTTCGGCTAACTAAATGTTTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAAATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTAGCAGATAATAAGTCGAGAGCTTTACGACGAAGCCCACGGTTTTCACAGGAGAATAAATCCAAGATCATGGAGATGAATACTCGACCAGGGACTGAGTC]
[-] EMBL CD111403             [ AAACTATCCAAAGCCCTCATGAATTCGCCTGGATAACGGTAGGCCAGTAATTTGGTTAAACTCCTCAAACAAGCTAGACACTGACGTGAAAATCCTGAACCCAAAACGGTAGTATGTTTTGTCCTCAGGGAACCATCCATCTTGCCACTTTTCAAATTATAGAATGAAATTAGCTTCCCAGTGAACTGAACTAAACCAGCCTCCATAGTACGATTCAGATCAACAAAATTTCGGCTAACTAAATGTTTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAAATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTAGCAGATAATAAGTCGAGAGCTTTACGACGAAGCCCACGGTTTTCACAGGAGAATAAATCCAAGATCATGGAGATGAATACTCGACCAGGG        ]
[-] EMBL CD164060             [                                                                                                TGAACCCAAAACGGTAGTATGTTTTGTCCTCAGGGAACCATCCATCTTGCCACTTTTCAAATTATAGAATGAAATTAGCTTCCCAGTGAACTGAACTAAACCAGCCTCCATAGTACGATTCAGATCAACAAAATTTCGGCTAACTAAATGTTTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAAATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTAGCAGATAATAAGTCGAGAGCTTTACGACGAAGCCCACGGTTTTCACAGGAGAATAAATCC                                      ]




>consensus_7108#0
TAAACTGTCCAAAGCCCTCATGAATTCCCCTGGATAACGGTAGGCCAGTAATTTGGTTAA
ACTCCTCAAACAAGCTAGACACTGACGTGAAAATCCTGAACCCAAAACGGTAGTATGTTT
TGTCCTCAGGGAACCATCCATCTTGCCACTTTTCAAATTATAGAATGAAATTAGCTTCCC
AGTGAACTGAACTAAACCAGCCTCCATAGTACGATTCAGATCAACAAAATTTCGGCTAAC
TAAATGTTTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAAAT
TGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTAGCAGATAATAAGTCGAGAGC
TTTACGACGAAGCCCACGGTTTTCACAGGAGAATAAATCCAAGATCATGGAGATGAATAC
TCGACCAGGGACTGAGTC

consensusID : consensus_7108#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [CTGAACCCATATCGGTATTATGTTTTGGAACTCATGGATCCATACATCTTGCCAGTTTTCAAATTATATAATGAAAGTACCTTCTCTGCGAACTGAACTAAACCAGGCTACATATGACACATTCAGATCAACAAAATTTCGGCTAACTAAATGATTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAAATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTATCAGATAATAAGTCGAGAGCTTTACGACGAAGCCCACGGTTTTCACAGGATAATAAATCCAAGATCATGGTCAGTCG]

[+] EMBL CD163806             [CTGAACCCATATCGGTATTATGTTTTGGAACTCATGGATCCATACATCTTGCCAGTTTTCAAATTATATAATGAAAGTACCTTCTCTGCGAACTGAACTAAACCAGGCTACATATGACACATTCAGATCAACAAAATTTCGGCTAACTAAATGATTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAAATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTATCAGATAATAAGTCGAGAGCTTTACGACGAAGCCCACGGTTTTCACAGGATAATAAATCCAAGATCATGGTCAGTCG]




>consensus_7108#1
CTGAACCCATATCGGTATTATGTTTTGGAACTCATGGATCCATACATCTTGCCAGTTTTC
AAATTATATAATGAAAGTACCTTCTCTGCGAACTGAACTAAACCAGGCTACATATGACAC
ATTCAGATCAACAAAATTTCGGCTAACTAAATGATTGTGCGACTTGAGGAAGGATTTGTA
ATTCATTTTAGTAAAATCAATTAAAATTGGAACTGGTTGAACATTTGCAGTTAAACTTGT
TAATTTATCAGATAATAAGTCGAGAGCTTTACGACGAAGCCCACGGTTTTCACAGGATAA
TAAATCCAAGATCATGGTCAGTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7108#0      TAAACTGTCCAAAGCCCTCATGAATTCCCCTGGATAACGGTAGGCCAGTAATTTGGTTAA 60
consensus_7108#1      ------------------------------------------------------------
                                                                                  

consensus_7108#0      ACTCCTCAAACAAGCTAGACACTGACGTGAAAATCCTGAACCCAAAACGGTAGTATGTTT 120
consensus_7108#1      -----------------------------------CTGAACCCATATCGGTATTATGTTT 25
                                                         ********* * ***** *******

consensus_7108#0      TGTC-CTCAGGGAACCATCCATCTTGCCACTTTTCAAATTATAGAATGAAATTAGCTTCC 179
consensus_7108#1      TGGAACTCATGGATCCATACATCTTGCCAGTTTTCAAATTATATAATGAAAGTACCTTCT 85
                      **   **** *** **** ********** ************* ******* ** **** 

consensus_7108#0      CAGTGAACTGAACTAAACCAGCCTCCATAGTACG-ATTCAGATCAACAAAATTTCGGCTA 238
consensus_7108#1      CTGCGAACTGAACTAAACCAGGCTACATATGACACATTCAGATCAACAAAATTTCGGCTA 145
                      * * ***************** ** ****  **  *************************

consensus_7108#0      ACTAAATGTTTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAA 298
consensus_7108#1      ACTAAATGATTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAA 205
                      ******** ***************************************************

consensus_7108#0      ATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTAGCAGATAATAAGTCGAGA 358
consensus_7108#1      ATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTATCAGATAATAAGTCGAGA 265
                      ****************************************** *****************

consensus_7108#0      GCTTTACGACGAAGCCCACGGTTTTCACAGGAGAATAAATCCAAGATCATGGAGATGAAT 418
consensus_7108#1      GCTTTACGACGAAGCCCACGGTTTTCACAGGATAATAAATCCAAGATCATGGTCAGTCG- 324
                      ******************************** *******************  *     

consensus_7108#0      ACTCGACCAGGGACTGAGTC 438
consensus_7108#1      --------------------