These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 584 fasta sequence [CTAGAACTTGCGGTTAAACTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTCTTGGGACTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTAATACATAGCGTGTTGTATAGCCGGTACTAGATGACTCACTTGATTGTACAGCATCTGAATTTGAGTGGACGTTTTTCATAGCTGTCTGATTGTTTATGATGCATGTATTAGCTAACGAAGTTGAGCCTGCTGAACTATTATTCTGATCACAGAACTTCACTTCACCTGAAGCAGACGACCCAGTTAGATTGATAGGACCGCGACTTAATAGGTCAGAAGACGAAATAGACAGCAAGCAAAACTTGTGAACATAATCCACAACAGCGATGCCGAATTCACTTCCAATAGCCATTAAACCAAAAGCTGAACTCATACTGATAGCTGTAATAGATGGCGGAGGGATAAGACAGGAAGCTGTAGGATCAGTACTTGACTTTAGATTTGATTCAAAGCTTAGTCCAAGTATGCCTACACGACAAACAAGAAGTGGTTGATAGCCTGGAGGCCAATGATGGCTACCTTGACGTACTGGAAC] [+] EMBL CD122774 [CTAGAACTTGCGGTTAAACTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTCTTGGGACTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTAATACATAGCGTGTTGTATAGCCGGTACTAGATGACTCACTTGATTGTACAGCATCTGAATTTGAGTGGACGTTTTTCATAGCTGTCTGATTGTTTATGATGCATGTATTACCTAACGAAGTTGAGCCTGCTGAACTATTATTCTGATCACAGAACTTCACTTCACCTGAAGCAGACGACCCAGTTAGATTGATAGGACCGCGACTTAATAGGTCAGAAGACGAAATAGACAGCAAGCAAAACTTGTGAACATAATCCACAACAGCGATGCCGAATTCACTTCCAATAG ] [-] EMBL CD122705 [ TAGAACTTGCGGTTAAACTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTCTTGGGACTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTAATACATAGCGTGTTGTATAGCCGGTACTAGATGACTCACTTGATTGTACAGCATCTGAATTTGAGTGGACGTTTTTCATAGCTGTCTGATTGTTTATGATGCATGTATTAGCTAACGAAGTTGAGCCTGCTGAACTATTATTCTGATCACAGAACTTCACTTCACCTGAAGCAGACGACCCAGTTAGATTGATAGGACCGCGACTTAATAGGTCAGAAGACGAAATAGACAGCAAGCAAAACTTGTGAACATAATCCACAACAGCGATGCCGAATTCACTTCCAATAGC ] [+] EMBL CD115484 [ TGACTCACTTGATTGT CAGCATCTGAATTTGAGTGGACGTTTTTCATAGCTGTCTGATTGTTTATGATGCATGTATTAGCTAACGAAGTTGAGCCTGCTGAACTATTATTCTGATCACAGAACTTCACTTCACCTGAAGCAGACGACCCAGTTAGATTGATAGGACCGCGACTTAATAGGTCAGAAGACGAAATAGACAGCAAGCAAAACTTGTGAACATAATCCACAACAGCGATGCCGAATTCACTTCCAATAGCCATTAAACCAAAAGCTGAACTCATACTGATAGCTGTAATAGATGGCGGAGGGATAAGACAGGAAGCTGTAGGATCAGTACTTGACTTTAGATTTGATTCAAAGCTTAGTCCAAGTATGCCTACACGACAAACAAGAAGTGGTTGATAGCCTGGAGGCCAATGATGGCTACCTTGACGTACTGGAAC] consensusID : consensus_7110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [GGACGTTCTTCAATACTCGATACTTATAGATTCAAAGCTAGGACACATCCACGGGATGTCCCGATCCAGAGATTTGGCACAAAATGTAAATCTTGTCTGGGAGATATCCATTCACTAAATAAAATTGTTTTAATTGTCTCACAGTTTAGGTTGTCTAATGAGCTAGCACTTGCGGTTAAACTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTTTGAAGAAGTGTTTAGTGCATTAGACGTTAGTCCTTGTAGACGAGATGGTTGATTAGTTCGACAGGCCAAAACCACTTGGGACCTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTCATACATAGCGTGTTGTATAGCCGGTACTAGATGACTCACTTGATAGTACAGCATCTGAATTTGAGTGGACGTTTTTC] [+] EMBL CD062472 [GGACGTTCTTCAATACTCGATACTTATAGATTCAAAGCTAGGACACATCCACGGGATGTCCCGATCCAGAGATTTGGCACAAAATGTAAATCTTGTCTGGGAGATATCCATTCACTAAATAAAATTGTTTTAATTGTCTCACAGTTTAGGTTGTCTAATGAGCTAGCACTTGCGGTTAAACTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTTTGAAGAAGTGTTTAGTGCATTAGACGTTAGTCCTTGTAGACGAGATGGTTGATTAGTTCGACAGGCCAAAACCACTTGGGACCTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTCATACATAGCGTGTTGTATAGCCGGTACTAGATGACTCACTTGATAGTACAGCATCTGAATTTGAGTGGACGTTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7110#0 CTAGAACTTGCGGTTAAACTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTCT 60 consensus_7110#1 --------------------------------------------------GGACGTTCTT 10 ** ** * consensus_7110#0 TGGGACTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTAATACATAGCGT 120 consensus_7110#1 CAATACTCGATACTTATAGATTCA------AAGCTAGGACACATCCACGGGATGTCCCGA 64 *** * ** * * ***** * * * * * * * ** consensus_7110#0 GTTGTATAGCCGGTACTAGATGACTCACTTGATTGTACAGCATCTGAATTTGAGTGGACG 180 consensus_7110#1 TCCAGAGATTTGGCACAAAATGTAAATCTTGTCTGGGAGATATCCATTCACTAAATAAAA 124 * * ** ** * *** **** ** *** * * consensus_7110#0 TTTTTCATAGCTGTCTGATTGTTTATGATGC---ATGTATTAGCTAACGAAGTTGAGCCT 237 consensus_7110#1 TTGTTT-TAATTGTCTCACAGTTTAGGTTGTCTAATGAGCTAGCACTTGCGGTTAAACTT 183 ** ** ** ***** * ***** * ** *** **** * *** * * * consensus_7110#0 GCTGAACTATTATTCTGATCACAGAACTTCACTTCACCTGAAGCAGACGACCCAGTTAGA 297 consensus_7110#1 CCCGGA----TGTGAAAACTGTGAAAGGTCGGAACACTTT--TTTGAAGAAGTGTTTAGT 237 * * * * * * ** ** *** * ** ** **** consensus_7110#0 TTGATAGGACCGCGACTTAATAGGTCAGAAGACGAAATAGA-CAGCAAGCAAAACTTGTG 356 consensus_7110#1 GCATTAGACGTTAGTCCTTGTAGACGAGATGGTTGATTAGTTCGACAGGCCAAA------ 291 *** * * * *** *** * * *** * ** ** *** consensus_7110#0 AACATAATCCACAACAGCGATGCCGAATTCACTTCCAATAGCCATTAAACCAAAAGCTGA 416 consensus_7110#1 ACCACTTGGGACCTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTG----TTC 347 * ** ** ** ******** * ** * * * consensus_7110#0 ACTCATACTGATAGCTGTAATAGATGGCGGAGGGATAAGACAGGAAGCTGTAGGATCAGT 476 consensus_7110#1 ATACATAGCGTGTTGTATAGCCGGTACTAGATGACTCA--CTTGATAGTACAGCATCTGA 405 * **** * * ** * * ** * * * * ** * ** *** * consensus_7110#0 ACTTGACTTTAGATTTGATTCAAAGCTTAGTCCAAGTATGCCTACACGACAAACAAGAAG 536 consensus_7110#1 ATTTGAGTGGACGTTT--TTC--------------------------------------- 424 * **** * * *** *** consensus_7110#0 TGGTTGATAGCCTGGAGGCCAATGATGGCTACCTTGACGTACTGGAAC 584 consensus_7110#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||