These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 543 fasta sequence [ACTGCGGATAATTCGTGTAGGACAATGCCACACAGTATAGTCTATATTCTTGACGACAACAGACCTAGGTCTAGGGCTGTGGTACTTCCGACCCTTGTAAAACGTTTACCATAACCTTTAAGGAGTGGTGTAATTGGCCCAGATGAACCGTTCCAAGATATGGAAAGTACATTATCTGTTCAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGAGATTTTAACTGCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACAATTCTGTATGGAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAACATGTCCTCAGATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACGAGACTCCCAAAGAGTGTCCAGCTGTTGATTATACACGACATACGCTTGATGGAGCTGCTTGCCTATTGAATAGCAGTAAATACTTCCCCAGTCGAGTAAGCATCAAAGTTACATCAGTTAATCGTCTTGATTCCGTCGGT] [+] EMBL CD188617 [ACTGCGGATAATTCGTGTAGGACAATGCCACACAGTATAGTCTATATTCTTGACGACAACAGACCTAGGTCTAGGGCTGTGGTACTTCCGACCCTTGTAAAACGTTTACCATAACCTTTAAGGAGTGGTGTAATTGGCCCAGATGAACCGTTCCAAGATATGGAAAGTACATTATCTGTTCAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGAGATTTTAACTGCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACAATTCTGTATGGAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAACATGTCCTCAGATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACAAGACTCCCAAAGAGTGTCCAGCTGTTGATTATACACGACATACGCTTGATGGAGCTGCTTGCCTATTGAATAGCAGT ] [-] EMBL CD134887 [ ATGTCCTCAGATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACGAGACTCCCAAAGAGTGTCCAGCTGTTGATTATACACGACATACGCTTGATGGAGCTGCTTGCCTATTGAATAGCAGTAAATACTTCCCCAGTCGAGTAAGCATCAAAGTTACATCAGTTAATCGTCTTGATTCCGTCGGT] [-] EMBL CD134891 [ ATGTCCTCAGATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACGAGACTCCCAAAGAGTGTCCAGCTGTTGATTATACACGACATACGCTTGATGGAGCTGCTTGCCTATTGAATAGCAGTAAATACTTCCCCAGTCGAGTAAGCATCAAAGTTACATCAGTTAATCGTCTTGATTCCGTCGGT] consensusID : consensus_7120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [GGGTTTATTCAAATAGGACAATGGCACAAGTAAAGTCTATTTTCGACGAAACAGACCTGGTACTAAGGCTGAGGAGTGGTGTAATTGGCCCGATGAACCGTTCGAAGATATGGAAAGTACATTAGCTGTTCAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGAGATTTTAACTGCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACAATTCTGTATGGAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAACATGTCCTCAGATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACAAGACTCCCAAAGAGTGTCCAGCTGTTGATTATACACGACATACG] [+] EMBL CD083861 [GGGTTTATTCAAATAGGACAATGGCACAAGTAAAGTCTATTTTCGACGAAACAGACCTGGTACTAAGGCTGAGGAGTGGTGTAATTGGCCCGATGAACCGTTCGAAGATATGGAAAGTACATTAGCTGTTCAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGAGATTTTAACTGCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACAATTCTGTATGGAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAACATGTCCTCAGATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACAAGACTCCCAAAGAGTGTCCAGCTGTTGATTATACACGACATACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7120#0 ACTGCGGATAATTCGTGTAGGACAATGCCACACAGTATAGTCTATATTCTTGACGACAAC 60 consensus_7120#1 ----GGGTTTATTCAAATAGGACAATGGCACA-AGTAAAGTCTAT--TTTCGACGA-AAC 52 ** * **** ********** **** **** ******* * * ***** *** consensus_7120#0 AGACCTAGGTCTAGGGCTGTGGTACTTCCGACCCTTGTAAAACGTTTACCATAACCTTTA 120 consensus_7120#1 AGACCTGGTACTAAGGCTG----------------------------------------- 71 ****** * *** ***** consensus_7120#0 AGGAGTGGTGTAATTGGCCCAGATGAACCGTTCCAAGATATGGAAAGTACATTATCTGTT 180 consensus_7120#1 AGGAGTGGTGTAATTGGCCC-GATGAACCGTTCGAAGATATGGAAAGTACATTAGCTGTT 130 ******************** ************ ******************** ***** consensus_7120#0 CAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGAGATTTTAACT 240 consensus_7120#1 CAGCAGTATATACAACAAACAATAAGACGTGATTTTAACAATGTAGATGAGATTTTAACT 190 ************************************************************ consensus_7120#0 GCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACAATTCTGTATG 300 consensus_7120#1 GCTCCAGAGGGTCAAGATGAAGTAGTCTGGAAATACGAACATTTGAGACAATTCTGTATG 250 ************************************************************ consensus_7120#0 GAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAACATGTCCTCAG 360 consensus_7120#1 GAACTAAATGGATTAGCTGTTTGTTTGCAAGAGCAATGTACCCCCAAAACATGTCCTCAG 310 ************************************************************ consensus_7120#0 ATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACGAGACTCCCAAAGAGTGT 420 consensus_7120#1 ATGACTGCTACTGAACAATGGATATTTTTGTGTGCAGCTCACAAGACTCCCAAAGAGTGT 370 ****************************************** ***************** consensus_7120#0 CCAGCTGTTGATTATACACGACATACGCTTGATGGAGCTGCTTGCCTATTGAATAGCAGT 480 consensus_7120#1 CCAGCTGTTGATTATACACGACATACG--------------------------------- 397 *************************** consensus_7120#0 AAATACTTCCCCAGTCGAGTAAGCATCAAAGTTACATCAGTTAATCGTCTTGATTCCGTC 540 consensus_7120#1 ------------------------------------------------------------ consensus_7120#0 GGT 543 consensus_7120#1 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||