cluster # 7130

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7130 cluster # 7130 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7130#0 length = 425 sequences # 3

consensus_7130#1 length = 412 sequences # 1

consensusID : consensus_7130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 425
fasta sequence

                              [TGTCTGGAGATTTTGAAATCCGTAAACCAGTAGAGCTCGGAGCTATACAACATCCAACAACGACATAATTATGCCAAAGAGGAATGAACTGCTCACGTTCATTCGCAGGTTTTTTACTTCCAGTTCGGAGTAACGAGGATGCTCGATTTTCAGCCATTTGTGCGCTTGGGTCAATTAAAGGAAAAATAGTATTTATTCGTTGAAATAATATTGACCAAGCAGATTTGATGGCCATGGGACAACTTGTAGGCAAATTAGATGAGTTGAATACAATAGAAAGACAAGTAGCCCATACATCTGTGACAGCCACACGTTCTTGTATAGGCTGCATAATGTAAGCCTGTTGAGTATGCTGAATTTGTTGATTATACTGAGATGCTCTTCGATGAACAGGTGTTGTAGATAAATACGACTTAGAAGTTTGT]

[+] EMBL CD121867             [TGTCTGGAGATTTTGAAATCCGTAAACCAGTAGAGCTCGGAGCTATACAACATCCAACAACGACATAATTATGCCAAAGAGGAATGAACTGCTCACGTTCATTCGCAGGTTTTTTACTTCCAGTTCGGAGTAACGAGGATGCTCGATTTTCAGCCATTTGTGCGCTTGGGTCAATTAAAGGAAAAATAGTATTTATTCGTTGAAATAATATTGACCAAGCAGATTTGATGGCCATGGGACAACTTGTAGGCAAATTAGATGAGTTGAATACAATAGAAAGACAAGTAGCCCATACATCTGTGACAGCCACACGTTCTTGTATAGGCTGCATAATGTAAGCCTGTTGAGTATGCTGAATTTGTTGATTATACTGAGATGCTCTTCGATGAACAGGTGTTGTAGATAAATACGACTTAGAAGTTTGT]
[+] EMBL CD121869             [TGTCTGGAGATTTTGAAATCCGTAAACCAGTAGAGCTCGGAGCTATACAACATCCAACAACGACATAATTATGCCAAAGAGGAATGAACTGCTCACGTTCATTCGCAGGTTTTTTACTTCCAGTTCGGAGTAACGAGGATGCTCGATTTTCAGCCATCTGTGCGCTTGGGTCAATTAAAGGAAAAATAGTATTTATTCGTTGAAATAATATTGACCAAGCAGATTTGATGGCCATGGGACAACTTGTAGGCAAATTAGATGAGTTGAATACAATAGAAAGACAAGTAGCCCATACATCTGTGACAGCCACACGTTCTTGTATAGGCTGCATAATGTAAGCCTGTTGAGTATGCTGAATTTGTTGATTATACTGAGATGCTCTTCGATGAACAGGTGTTGTAGATAAATACGACTTAGAAG     ]
[+] EMBL CD121985             [TGTCTGGAGATTTTGAAATCCGTAAACCAGTAGAGCTCGGAGCTATACAACATCCAACAACGACATAATTATGCCAAAGAGGAATGAACTGCTCACGTTCATTCGCAGGTTTTTTACTTCCAGTTCGGAGTAACGAGGATGCTCGATTTTCAGCCATTTGTGCGCTTGGGTCAATTAAAGGAAAAATAGTATTTATTCGTTGAAATAATATTGACCAAGCAGATTTGATGGCCATGGGACAACTTGTAGGCAAATTAGATGAGTTGAATACAATAGAAAGACAAGTAGCCCATACATCTGTGACAGCCACACGTTCTTGTATAGGCTGCATAATGTAAGCCTGTTGAGTATGCTGAATTTGTTGA                                                            ]




>consensus_7130#0
TGTCTGGAGATTTTGAAATCCGTAAACCAGTAGAGCTCGGAGCTATACAACATCCAACAA
CGACATAATTATGCCAAAGAGGAATGAACTGCTCACGTTCATTCGCAGGTTTTTTACTTC
CAGTTCGGAGTAACGAGGATGCTCGATTTTCAGCCATTTGTGCGCTTGGGTCAATTAAAG
GAAAAATAGTATTTATTCGTTGAAATAATATTGACCAAGCAGATTTGATGGCCATGGGAC
AACTTGTAGGCAAATTAGATGAGTTGAATACAATAGAAAGACAAGTAGCCCATACATCTG
TGACAGCCACACGTTCTTGTATAGGCTGCATAATGTAAGCCTGTTGAGTATGCTGAATTT
GTTGATTATACTGAGATGCTCTTCGATGAACAGGTGTTGTAGATAAATACGACTTAGAAG
TTTGT

consensusID : consensus_7130#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 412
fasta sequence

                              [TAATTTGCCTACAAGTTGTCCCATGGCCATCAAATCTGCTTGGTCAATATTATTTCAACGAATAAATACTATTTTTCCTTTAATTGACCCAAGGCAAGTCTTTTTACTTACTTTTTTCATTTCCATTAAATCAAAGCTAGTCATTTGATTCAGGGTATTTTCTGTTTTTGTTAAGGTTTATCTTTATAGAGAGAGAAATAAAGTTGTTTCCGATGTAACGTTACTCGTCGACAGTTATTTGCTACCCGAAAACGCTACCCTAGTACTATACGACATGGTACTATTTTTATAGTTATTCTTTTCCGGAGTTTTTCTCTGTGTGCTTACGCTTTATAAAGACTTTGTCACTTTTTTATACTTCACTTGGTATATATCCTACAGATATATTTACTGAAAGCTCACTTTTTATATT]

[+] EMBL CD111080             [TAATTTGCCTACAAGTTGTCCCATGGCCATCAAATCTGCTTGGTCAATATTATTTCAACGAATAAATACTATTTTTCCTTTAATTGACCCAAGGCAAGTCTTTTTACTTACTTTTTTCATTTCCATTAAATCAAAGCTAGTCATTTGATTCAGGGTATTTTCTGTTTTTGTTAAGGTTTATCTTTATAGAGAGAGAAATAAAGTTGTTTCCGATGTAACGTTACTCGTCGACAGTTATTTGCTACCCGAAAACGCTACCCTAGTACTATACGACATGGTACTATTTTTATAGTTATTCTTTTCCGGAGTTTTTCTCTGTGTGCTTACGCTTTATAAAGACTTTGTCACTTTTTTATACTTCACTTGGTATATATCCTACAGATATATTTACTGAAAGCTCACTTTTTATATT]




>consensus_7130#1
TAATTTGCCTACAAGTTGTCCCATGGCCATCAAATCTGCTTGGTCAATATTATTTCAACG
AATAAATACTATTTTTCCTTTAATTGACCCAAGGCAAGTCTTTTTACTTACTTTTTTCAT
TTCCATTAAATCAAAGCTAGTCATTTGATTCAGGGTATTTTCTGTTTTTGTTAAGGTTTA
TCTTTATAGAGAGAGAAATAAAGTTGTTTCCGATGTAACGTTACTCGTCGACAGTTATTT
GCTACCCGAAAACGCTACCCTAGTACTATACGACATGGTACTATTTTTATAGTTATTCTT
TTCCGGAGTTTTTCTCTGTGTGCTTACGCTTTATAAAGACTTTGTCACTTTTTTATACTT
CACTTGGTATATATCCTACAGATATATTTACTGAAAGCTCACTTTTTATATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7130#0      -----TGTCTGGAGATTTTGAAATCCGTAAACCAGTAGAGCTCGGAGCTATACAACATCC 55
consensus_7130#1      TAATTTGCCTACAAGTTGTCCCAT--GGCCATCAAATCTGCTTGGT-CAATATTATTTCA 57
                           ** **  *  ** *   **  *   * **     *** **  * ***  *  ** 

consensus_7130#0      AACAACGA-CATAATTATGCCAAAGAGGAATGAACTGCTCACGTTCATTCGCAGGTTTTT 114
consensus_7130#1      ACGAATAAATACTATTTTTCCTTTAATTGACCCAAGGCAAGTCTTTTTACTTACTTTTTT 117
                      *  **  *  *  *** * **    *   *   *  **     **  * *  *  *****

consensus_7130#0      TACTTCCAGT---TCGGAG-TAACGAGGATGCTCG----ATTTTCAGCCATTTGTGCG-C 165
consensus_7130#1      CATTTCCATTAAATCAAAGCTAGTCATTTGATTCAGGGTATTTTCTGTTTTTGTTAAGGT 177
                       * ***** *   **  ** **   *      **     ****** *   **  *  *  

consensus_7130#0      TTGGGTCAATTAAAGGAAAAATAGTATTTATTCGTTGAAATAATATTGACCAAGCAGATT 225
consensus_7130#1      TTATCTTTATAGAGAGAGAAATAAAGTTGTTTC--CGATGTAACGTTACTCGTCGACAGT 235
                      **   *  **  *  ** *****   **  ***   **  ***  **   *    * * *

consensus_7130#0      TGATGGCCATGGGACAACTTGTAGGCAAATTAGATGAGTTGAATACAATAGAAAGACAAG 285
consensus_7130#1      TATTTGCTACCCGAAAAC-----GCTACCCTAGTACTATACGACATGGTACTATTTTTA- 289
                      *  * ** *   ** ***     *  *   ***     *   * *   **  *     * 

consensus_7130#0      TAGCCCATACATCTGTGACAGCCACACGTTCTTGTATAGGCTGCATAATG--TAAGCCTG 343
consensus_7130#1      TAGTT-ATTCTTTTCCGGAGTTTTTCTCTGTGTGCTTACGCTTTATAAAGACTTTGTCAC 348
                      ***   ** * * *  *           *   **  ** ***  **** *  *  * *  

consensus_7130#0      TTGAGTATGCTGAATTTGTTGATTATACTGAGATGCTCTTCGATGAACAGGTGTTGTAGA 403
consensus_7130#1      TTTTTTATACTTCACTTGGTATATATCCTACAGATATATTTACTGAAAGCTCACTTTTTA 408
                      **   *** **  * *** *   *** **       * **   ****       * *  *

consensus_7130#0      TAAATACGACTTAGAAGTTTGT 425
consensus_7130#1      TATT------------------ 412
                      **