These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 528 fasta sequence [GTTAAACACGATTTTTCGCTATTTTTCGAAAGTTTGTGTGTTTTGCCTATTTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCGTATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCTATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT] [+] EMBL CD137272 [GTTAAACACGATTTTTCGCTATTTTTCGAAAGTTTGTGTGTTTTGCCTATTTCTTTTCTGAATCCGTCACCCACTTCTCATATAACCTATCATCTTTTCTCCATCTTTTACTGTAATACTCACCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTCTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT] [-] EMBL CD195127 [ cntaaTCTNTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTNTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCGTATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCTATCTTTTACTGTAATACTCGCCACTGCA ] [-] EMBL CD195040 [ TTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCGTATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCTATCTTTTACTGTAATACTCGCCACTGCA ] consensusID : consensus_7133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence [CAAGCCGCTGTTATCCATATCAATAATTTTAGAGGTCATTTTAGTTTCCGTGATCACTGCTATGTGTATGGACGAGGTAATCAACCACACTACACGCGAACATGGGGCAAATATTATGAAAGTGTGTGTGTTTTGACTATTTCGTTTTTGAATCCATCACCCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT] [-] EMBL CD195374 [CAAGCCGCTGTTATCCATATCAATAATTTTAGAGGTCATTTTAGTTTCCGTGATCACTGCTATGTGTATGGACGAGGTAATCAACCACACTACACGCGAACATGGGGCAAATATTATGAAAGTGTGTGTGTTTTGACTATTTCGTTTTTGAATCCATCACCCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7133#0 GTTAAACACGATTTTTCGCTATTTTTCGAAAGTTTGTGTGTTTTGCCTATTTCTTTTCTG 60 consensus_7133#1 ------------------------------------------------------------ consensus_7133#0 AATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCTCCATCTTTTACTGTAATACT 120 consensus_7133#1 ------------------------------------------------------------ consensus_7133#0 CGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCTACATTCCTA 180 consensus_7133#1 ------------------------------------------------------------ consensus_7133#0 TATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTGTTTTGCCTAAT 240 consensus_7133#1 ------------------------------------------------------------ consensus_7133#0 TCTTTTCTGAATCCGTCATTCACTTCTCGTATAATCTATCATCTTTTCTCCATCTTTTAC 300 consensus_7133#1 -----------------------------------CAAGCCGCTGTTATCCATAT----C 21 * * * ** ** ***** * * consensus_7133#0 TGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCTTAACCATTTTCTATGCATGCT 360 consensus_7133#1 AATAATTTTAGAGGTCATTTTAGTTTCCGTGATCACTGCTA-----TGTGTATGGACGAG 76 **** * * ** ** * * * ** * * **** * * consensus_7133#0 ACATTC--CTATATTAGACTGTAGAACACGGCTTTTCATCATATTTTGAAAGTTTGTGTG 418 consensus_7133#1 GTAATCAACCACACTACACGCGAACATGGGGC------AAATATTATGAAAGTGTGTGTG 130 * ** * * * ** ** * * *** ***** ******* ****** consensus_7133#0 TTTTGCCTAATTCTTTTCTGAATCCGTCATTCACTTCTCATATAATCTATCATCTTTTCT 478 consensus_7133#1 TTTTGACTATTTCGTTTTTGAATCCATCACCCACTTCTCATATAATCTATCATCTTTTCT 190 ***** *** *** *** ******* *** ***************************** consensus_7133#0 CTATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT 528 consensus_7133#1 CCATCTTTTACTGTAATACTCGCCACTGCATTTACTTTCACTTTGTTTCT 240 * ************************************************ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||