These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 695 fasta sequence [TGAAATCCTCGGTCACAAACATCACACAATAATAAATCAGACTGAGGATCTTCCTTATCAGGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACACAAAGCCAACGAATTGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTCGGATGACCCGACTGCCCACATTCCCAACAGGCAATCATTTCTTCCGCAGAGTTAGTTTTGTTGTTCAGTTCTGACGTACCCAAACATAAGCCACATATTGGAATCACCTTGGATGGCCTGCGTAGCCTTCTGTTCAGAAGTCCCCGAGATTTAACGGAGACAGATGATAATTTGGCTTCAGCTCCATGAGATGATTCAGAGGGCGTTCCTGAAGCAGTCCTTTGCCTGAGAGTTCTCTGCCCAGAACCCTGACAAACACCAGTATATTCAGTAGGACTTGAGTTCATTGGGGTATTTACATTATCATGACTTCGCAGAAGAGGTTCATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGTGGAGAAAAACAAGACCGCTTCCTGGTATTCATCCTTTCATTAACGGCTTGAAATTATCAAGTATGTAGCCCGTGAAAATAAGAACA] [-] EMBL CD195475 [TGAAATCCTCGGTCACAAACATCACACAATAATAAATCAGACTGAGGATCTTCCTTATCAGGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACACAAAGCCAACGAATCGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTCGGATGACCCGACTGCCCACATTCCCAACAGGCAATCATTTCTTCCGCAGAGTTAGTTTTGTTGTTCAGTTCTGACGTACCCAAACATAAGC ] [+] EMBL CD123457 [ TATCAGGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACACAAAGCCAACGAATTGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTCGGATGACCCGACTGCCCACATTCCCAACAGGCAATCATTTCTTCCGCAGAGTTAGTTTTGTTGTTCAGTTCTGACGTACCCAAACATAAGCCACATATTGGAATCACCTTGGATGGCCTGCGTAGCCTTCTGTTCAGAAGTCCCCGAGATTTAACGGAGACAGATGATAATTTGGCTTCAGCTCCATGAGATGATTCAGAGGGCGTTCCTGAAGCAGTCCTTTGCCTGAGAGTTCTCTGCCCAGAACCCTGACAAACACCAGTATATTCAGTAGGACTTGAGTTCATTGGGGTATTTACATTATCATGACTTCGCAGAAGAGGTTCATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGTGGAGAAAAACAAGACCGCTTCCTGGTATTCATCCTTTCATTAACGGCTTGAAATTATCAAGTATGTAGCCCGTGAAAATAAGAACA] [+] EMBL CD123495 [ TATCAGGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACACAAAGCCAACGAATTGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTCGGATGACCCGACTGCCCACATTCCCAACAGGCAATCATTTCTTCCGCAGAGTTAGTTTTGTTGTTCAGTTCTGACGTACCCAAACATAAGCCACATATTGGAATCACCTTGGATGGCCTGCGTAGCCTTCTGTTCAGAAGTCCCCGAGATTTAACGGAGACAGATGATAATTTGGCTTCAGCTCCATGAGATGATTCAGAGGGCGTTCCTGAAGCAGTCCTTTGCCTGAGAGTTCTCTGCCCAGAACCCTGACAAACACCAGTATATTCAGTAGGACTTGAGTTCATTGGGGTATTTACATTATCATGACTTCGCAGAAGAGGTTCATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGTGGAGAAAAACAAGACCGCTTCCTGGTATTCATCCTTTCATTAACGGCTTGAAATTATCAAGTATGTAGCC ] consensusID : consensus_7136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [CATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGAGGAGAAAAACAAGACCGCTTCCTGGCATTCATCCTTTCATTAACGGCTTGAAATTATCTGAGAACTGAAAGAGGTATCTCAGTAGTCTATGCACTCCATCAAATTACTAGATAAGTGAAACCCAGCTCTGTTTACTAGTCATTTCCTGAAGCCTGGTGCATGCGGTTATAAACAACTAACTTGCATCAGTCGCATAGAATGTTTTATTTACTTGGACAGAGAATACTGGATTTCACTACAAGGTCCAGACCAGTAGATCG] [+] EMBL CD088752 [CATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGAGGAGAAAAACAAGACCGCTTCCTGGCATTCATCCTTTCATTAACGGCTTGAAATTATCTGAGAACTGAAAGAGGTATCTCAGTAGTCTATGCACTCCATCAAATTACTAGATAAGTGAAACCCAGCTCTGTTTACTAGTCATTTCCTGAAGCCTGGTGCATGCGGTTATAAACAACTAACTTGCATCAGTCGCATAGAATGTTTTATTTACTTGGACAGAGAATACTGGATTTCACTACAAGGTCCAGACCAGTAGATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7136#0 TGAAATCCTCGGTCACAAACATCACACAATAATAAATCAGACTGAGGATCTTCCTTATCA 60 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 GGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACA 120 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 CAAAGCCAACGAATTGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTC 180 consensus_7136#1 --------------------------------------------CATTTTCAAATTTGGG 16 ****** * * * consensus_7136#0 GGATGACCCGACTGCCCACATTCCCAACAGGCAAT-CATTTCTTCCGCAGAGTTAGTTTT 239 consensus_7136#1 GGAATATACGACAGGA-ACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTA 75 *** * **** * *** ** ** * *** *** ** ** * consensus_7136#0 GTTGTTCAGTTCTGACGTACCCAAACATAAGCCACATATTGGAATCACCTTGGATGGCCT 299 consensus_7136#1 ATTCTGTACACCTAATATCACCATATCGAGGAGAAAAACAAGACCGCTTCCTGGCATTCA 135 ** * * ** * * *** * * * * * * ** * * consensus_7136#0 GCGTAGCCTT--CTGTTCAGAAGTCCCCGAGATTTAACGGAGACAGATGA-TAATTTGGC 356 consensus_7136#1 TCCTTTCATTAACGGCTTGAAATTATCTGAGAACTGAAAGAGGTATCTCAGTAGTCTA-- 193 * * * ** * * * ** * * **** * * *** * * * ** * * consensus_7136#0 TTCAGCTCCATGAGATGATTCAGAGGGCGTTCCTGAAGCAGTCCTTTGCCTGAGAGTTCT 416 consensus_7136#1 -TGCACTCCATCAAATTACTAGATAAG------TGAAACCCAGCTCTGTTTACTAGTCAT 246 * ****** * ** * * * **** * ** ** * *** * consensus_7136#0 CTGCCCAGAACCCTGACAAACACCAGTATATTCAGTAGGACTTGAGTTCATTGGGGTATT 476 consensus_7136#1 TT--CCTGAAGCCTGGTGCATGCGGTTATAAACAACTA-ACTTGCATCAGTCGCATAGAA 303 * ** *** **** * * **** ** ***** * * * consensus_7136#0 TACATTATCATGACTTCGCAGAAGAGGTTCATTTTCAAATTTGGGGGAATATACGACAGG 536 consensus_7136#1 TGTTTTATT-TACTTGGACAGAGAATACTGGATTTCA--CTACAAGGTCCAGACCAGTAG 360 * **** * * **** * * ***** * ** * ** * * consensus_7136#0 AACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAAT 596 consensus_7136#1 ATCG-------------------------------------------------------- 364 * * consensus_7136#0 ATCACCATATCGTGGAGAAAAACAAGACCGCTTCCTGGTATTCATCCTTTCATTAACGGC 656 consensus_7136#1 ------------------------------------------------------------ consensus_7136#0 TTGAAATTATCAAGTATGTAGCCCGTGAAAATAAGAACA 695 consensus_7136#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||