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Schistosoma mansoni
cluster # 7136 cluster # 7136       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7136#0 length = 695 sequences # 3  
consensus_7136#1 length = 364 sequences # 1  

consensusID : consensus_7136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 695
fasta sequence
                              [TGAAATCCTCGGTCACAAACATCACACAATAATAAATCAGACTGAGGATCTTCCTTATCAGGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACACAAAGCCAACGAATTGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTCGGATGACCCGACTGCCCACATTCCCAACAGGCAATCATTTCTTCCGCAGAGTTAGTTTTGTTGTTCAGTTCTGACGTACCCAAACATAAGCCACATATTGGAATCACCTTGGATGGCCTGCGTAGCCTTCTGTTCAGAAGTCCCCGAGATTTAACGGAGACAGATGATAATTTGGCTTCAGCTCCATGAGATGATTCAGAGGGCGTTCCTGAAGCAGTCCTTTGCCTGAGAGTTCTCTGCCCAGAACCCTGACAAACACCAGTATATTCAGTAGGACTTGAGTTCATTGGGGTATTTACATTATCATGACTTCGCAGAAGAGGTTCATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGTGGAGAAAAACAAGACCGCTTCCTGGTATTCATCCTTTCATTAACGGCTTGAAATTATCAAGTATGTAGCCCGTGAAAATAAGAACA]

[-] EMBL CD195475             [TGAAATCCTCGGTCACAAACATCACACAATAATAAATCAGACTGAGGATCTTCCTTATCAGGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACACAAAGCCAACGAATCGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTCGGATGACCCGACTGCCCACATTCCCAACAGGCAATCATTTCTTCCGCAGAGTTAGTTTTGTTGTTCAGTTCTGACGTACCCAAACATAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD123457             [                                                       TATCAGGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACACAAAGCCAACGAATTGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTCGGATGACCCGACTGCCCACATTCCCAACAGGCAATCATTTCTTCCGCAGAGTTAGTTTTGTTGTTCAGTTCTGACGTACCCAAACATAAGCCACATATTGGAATCACCTTGGATGGCCTGCGTAGCCTTCTGTTCAGAAGTCCCCGAGATTTAACGGAGACAGATGATAATTTGGCTTCAGCTCCATGAGATGATTCAGAGGGCGTTCCTGAAGCAGTCCTTTGCCTGAGAGTTCTCTGCCCAGAACCCTGACAAACACCAGTATATTCAGTAGGACTTGAGTTCATTGGGGTATTTACATTATCATGACTTCGCAGAAGAGGTTCATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGTGGAGAAAAACAAGACCGCTTCCTGGTATTCATCCTTTCATTAACGGCTTGAAATTATCAAGTATGTAGCCCGTGAAAATAAGAACA]
[+] EMBL CD123495             [                                                       TATCAGGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACACAAAGCCAACGAATTGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTCGGATGACCCGACTGCCCACATTCCCAACAGGCAATCATTTCTTCCGCAGAGTTAGTTTTGTTGTTCAGTTCTGACGTACCCAAACATAAGCCACATATTGGAATCACCTTGGATGGCCTGCGTAGCCTTCTGTTCAGAAGTCCCCGAGATTTAACGGAGACAGATGATAATTTGGCTTCAGCTCCATGAGATGATTCAGAGGGCGTTCCTGAAGCAGTCCTTTGCCTGAGAGTTCTCTGCCCAGAACCCTGACAAACACCAGTATATTCAGTAGGACTTGAGTTCATTGGGGTATTTACATTATCATGACTTCGCAGAAGAGGTTCATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGTGGAGAAAAACAAGACCGCTTCCTGGTATTCATCCTTTCATTAACGGCTTGAAATTATCAAGTATGTAGCC                ]


>consensus_7136#0 TGAAATCCTCGGTCACAAACATCACACAATAATAAATCAGACTGAGGATCTTCCTTATCA GGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACA CAAAGCCAACGAATTGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTC GGATGACCCGACTGCCCACATTCCCAACAGGCAATCATTTCTTCCGCAGAGTTAGTTTTG TTGTTCAGTTCTGACGTACCCAAACATAAGCCACATATTGGAATCACCTTGGATGGCCTG CGTAGCCTTCTGTTCAGAAGTCCCCGAGATTTAACGGAGACAGATGATAATTTGGCTTCA GCTCCATGAGATGATTCAGAGGGCGTTCCTGAAGCAGTCCTTTGCCTGAGAGTTCTCTGC CCAGAACCCTGACAAACACCAGTATATTCAGTAGGACTTGAGTTCATTGGGGTATTTACA TTATCATGACTTCGCAGAAGAGGTTCATTTTCAAATTTGGGGGAATATACGACAGGAACA GGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCA CCATATCGTGGAGAAAAACAAGACCGCTTCCTGGTATTCATCCTTTCATTAACGGCTTGA AATTATCAAGTATGTAGCCCGTGAAAATAAGAACA



consensusID : consensus_7136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence
                              [CATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGAGGAGAAAAACAAGACCGCTTCCTGGCATTCATCCTTTCATTAACGGCTTGAAATTATCTGAGAACTGAAAGAGGTATCTCAGTAGTCTATGCACTCCATCAAATTACTAGATAAGTGAAACCCAGCTCTGTTTACTAGTCATTTCCTGAAGCCTGGTGCATGCGGTTATAAACAACTAACTTGCATCAGTCGCATAGAATGTTTTATTTACTTGGACAGAGAATACTGGATTTCACTACAAGGTCCAGACCAGTAGATCG]

[+] EMBL CD088752             [CATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGAGGAGAAAAACAAGACCGCTTCCTGGCATTCATCCTTTCATTAACGGCTTGAAATTATCTGAGAACTGAAAGAGGTATCTCAGTAGTCTATGCACTCCATCAAATTACTAGATAAGTGAAACCCAGCTCTGTTTACTAGTCATTTCCTGAAGCCTGGTGCATGCGGTTATAAACAACTAACTTGCATCAGTCGCATAGAATGTTTTATTTACTTGGACAGAGAATACTGGATTTCACTACAAGGTCCAGACCAGTAGATCG]


>consensus_7136#1 CATTTTCAAATTTGGGGGAATATACGACAGGAACAGGAGAAAGAGATTCTATATTGCTTG AATGACCTTGGTCTAATTCTGTACACCTAATATCACCATATCGAGGAGAAAAACAAGACC GCTTCCTGGCATTCATCCTTTCATTAACGGCTTGAAATTATCTGAGAACTGAAAGAGGTA TCTCAGTAGTCTATGCACTCCATCAAATTACTAGATAAGTGAAACCCAGCTCTGTTTACT AGTCATTTCCTGAAGCCTGGTGCATGCGGTTATAAACAACTAACTTGCATCAGTCGCATA GAATGTTTTATTTACTTGGACAGAGAATACTGGATTTCACTACAAGGTCCAGACCAGTAG ATCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7136#0      TGAAATCCTCGGTCACAAACATCACACAATAATAAATCAGACTGAGGATCTTCCTTATCA 60
consensus_7136#1      ------------------------------------------------------------
                                                                                  

consensus_7136#0      GGTGATGGATTTTGATCTTCTGAATTTGACTGACACAAACAACATCTCTTACAGTCGACA 120
consensus_7136#1      ------------------------------------------------------------
                                                                                  

consensus_7136#0      CAAAGCCAACGAATTGAAGTAATGCGTTTAACTAAATCCGGTGGCATTTTGAGACAAGTC 180
consensus_7136#1      --------------------------------------------CATTTTCAAATTTGGG 16
                                                                  ****** * *   *  

consensus_7136#0      GGATGACCCGACTGCCCACATTCCCAACAGGCAAT-CATTTCTTCCGCAGAGTTAGTTTT 239
consensus_7136#1      GGAATATACGACAGGA-ACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTA 75
                      ***  *  **** *   ***     ** **    *  *** ***        ** ** * 

consensus_7136#0      GTTGTTCAGTTCTGACGTACCCAAACATAAGCCACATATTGGAATCACCTTGGATGGCCT 299
consensus_7136#1      ATTCTGTACACCTAATATCACCATATCGAGGAGAAAAACAAGACCGCTTCCTGGCATTCA 135
                       ** *  *   ** *  *  *** *   * *  * * *   **         *     * 

consensus_7136#0      GCGTAGCCTT--CTGTTCAGAAGTCCCCGAGATTTAACGGAGACAGATGA-TAATTTGGC 356
consensus_7136#1      TCCTTTCATTAACGGCTTGAAATTATCTGAGAACTGAAAGAGGTATCTCAGTAGTCTA-- 193
                       * *  * **  * * *   ** *  * ****  * *  ***  *  * * ** * *   

consensus_7136#0      TTCAGCTCCATGAGATGATTCAGAGGGCGTTCCTGAAGCAGTCCTTTGCCTGAGAGTTCT 416
consensus_7136#1      -TGCACTCCATCAAATTACTAGATAAG------TGAAACCCAGCTCTGTTTACTAGTCAT 246
                       *   ****** * ** * *      *      **** *    ** **  *   ***  *

consensus_7136#0      CTGCCCAGAACCCTGACAAACACCAGTATATTCAGTAGGACTTGAGTTCATTGGGGTATT 476
consensus_7136#1      TT--CCTGAAGCCTGGTGCATGCGGTTATAAACAACTA-ACTTGCATCAGTCGCATAGAA 303
                       *  ** *** ****    *  *   ****  **     *****  *   * *       

consensus_7136#0      TACATTATCATGACTTCGCAGAAGAGGTTCATTTTCAAATTTGGGGGAATATACGACAGG 536
consensus_7136#1      TGTTTTATT-TACTTGGACAGAGAATACTGGATTTCA--CTACAAGGTCCAGACCAGTAG 360
                      *   ****  *   *   ****  *   *   *****   *    **   * ** *   *

consensus_7136#0      AACAGGAGAAAGAGATTCTATATTGCTTGAATGACCTTGGTCTAATTCTGTACACCTAAT 596
consensus_7136#1      ATCG-------------------------------------------------------- 364
                      * *                                                         

consensus_7136#0      ATCACCATATCGTGGAGAAAAACAAGACCGCTTCCTGGTATTCATCCTTTCATTAACGGC 656
consensus_7136#1      ------------------------------------------------------------
                                                                                  

consensus_7136#0      TTGAAATTATCAAGTATGTAGCCCGTGAAAATAAGAACA 695
consensus_7136#1      ---------------------------------------
                                                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)