These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 818 fasta sequence [GAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCAAGATTAGTAGTTAATTGATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCTGAATTTCGACGCAGTTCATCAAGCTCTGATCCAACTTTTACAAGTTCATCATAAACTTCCATGAAACGACGTAACTGTTCACGTGCACTATCTGGTAAACCACCCATAATGCGTGCACCTAGTGGGGGCATCCGACTTTTTAACTGTCGAGTGCGACGTATAAGTTGATCCAACTGACCATGAAAATTAAAGGTCTCACTCAATGCTTCTTCTAATGCTGCTTGTTTATTGCGTACACTCAGTTTCAAACGTTCCCATGCTTTATTCATTTGAATAATTTTATCTCGGATATCTGGTGTTTTTAAATCTGAAGTCTGTGATTTTCTTTTGACATCTTTATTAGTATCTATTCCAGAGGATTTGTCGATTTTCTTGCAATCAGCACGTTCTAATTTTCTTGCTTGTTCTTCTATTCTTACAACAGCTAACTGATGACTGTTGATATTGTGATGAATTATTTTAATGCGTGCTAAATCAGCTTCTAATCCTCGAATATTTGCCCGACGTATAGGTATTTGATCTACAGCTGTTTGCATTTGATCAATCCATTTAATTAATCCATCAATAGCACTTTCAAATTCACCTAAACCAAGTAAAACAGTTTGTAAACGATGACGTCTACTATTGCCGGAATCTAATAAATTGTCCCATCGTCGATTAGCTACAGTTAGATCAGATTGTAATGATGTAGTATTTTGTACTGGGACTGTTCCG] [-] EMBL CD159700 [GAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCAAGATTAGTAGTTAATTGATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCTGAATTTCGACGCAGTTCATCAAGCTCTGATCCAACTTTTACAAGTTCATCATAAACTTCCATGAAACGACGTAACTGTTCACGTGCACTATCTGGTAAACCACCCATAATGCGTGCACCTAGTGGGGGCATCCGACTTTTTAACTGTCGAGTGCGACGTATAAGTTGATCCAACTGACCATGAAAATTAAAGGTCTCACTCAATGCTTCTTCTAATGCTGCTTGTTTATTGCGTACACTCAGTTTCAAACGTTCCCATGCTTTATTCA ] [+] EMBL CD183235 [ CCGACTTTTTAACTGTCGAGTGCGACGTATAAGTTGATCCAACTGACCATGAAAATTAAAGGTCTCACTCAATGCTTCTTCTAATGCTGCTTGTTTATTGCGTACACTCAGTTTCAAACGTTCCCATGCTTTATTCATTTGAATAATTTTATCTCGGATATCTGGTGTTTTTAAATCTGAAGTCTGTGATTTTCTTTTGACATCTTTATTAGTATCTATTCCAGAGGATTTGTCGATTTTCTTGCAATCAGCACGTTCTAATTTTCTTGCTTGTTCTTCTATTCTTACAACAGCTAACTGATGACTGTTGATATTGTGATGAATTATTTTAATGCGTGCTAAATCAGCTTCTAATCCTCGAATATTTGCCCGACGTATAGGTATTTGATCTACAGCTGTTTGCATTTGATCAATCCATTTAATTAATCCATCAATAGCACTTTCAAATTCACCTAAACCAAGTAAAACAGTTTGTAAACGATGACGTCTACTATTGCCGGAATCTAATAAATTGTCCCATCGTCGATTAGCTACAGTTAGATCAGATTGTAATGATGTAGTATTTTGTACTGGGACTGTTCCG] consensusID : consensus_7157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [GCATCATTTGTGATAAATGATCATGTAATTCTTCGACTTGTTTTAAACCTAATTCCATACGGTCACGAATATCTTGAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCAAGATTAGTAGTTAATTGATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCTGAATTTCGACGCAGTTCATCAAGCTGTTTACGTAGGGAAAAAGAGTAAAAAAGCACGAGTTAACTTAAGCATGCATAAATAAAATGTAGTAATTACCATTGTCTACAATAAGCATATGACAAATAGTTGAAGTAAAGACATTATTTACCTCTGATCCAACTTTTACAAGTTCATCATAAACTTCCATGAAACGACGTAACTGTTCACGTGCACTATCTGGTAAACCACCCATAATGCGTGCACCTGGTGGGGGCATCCGACTTTTTAACTGTCGAGTGCGACGTATAAGTTGA] [+] EMBL CD112129 [GCATCATTTGTGATAAATGATCATGTAATTCTTCGACTTGTTTTAAACCTAATTCCATACGGTCACGAATATCTTGAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCAAGATTAGTAGTTAATTGATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCTGAATTTCGACGCAGTTCATCAAGCTGTTTACGTAGGGAAAAAGAGTAAAAAAGCACGAGTTAACTTAAGCATGCATAAATAAAATGTAGTAATTACCATTGTCTACAATAAGCATATGACAAATAGTTGAAGTAAAGACATTATTTACCTCTGATCCAACTTTTACAAGTTCATCATAAACTTCCATGAAACGACGTAACTGTTCACGTGCACTATCTGGTAAACCACCCATAATGCGTGCACCTGGTGGGGGCATCCGACTTTTTAACTGTCGAGTGCGACGTATAAGTTGA] consensusID : consensus_7157#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [TTTTCTTGTGACATCTTTATTAGTATCTATTCCAGAGGATTTGTCGATTTTCTTGCAATCAGCACGTTCTAATTTTCTTGCTTGTTCTTCTATTCTTACAACAGCTAACTGATGACTGTTGATATTGTGATGAATTATCTTAGTGACAAAGTAAGAGAGAGAAAAATAATTAGCCAAGAAAATTATAAAACTGCATAACTTATAAATGTTAAGCATTGATTAATAGGCAAAATTCAGACTTGATAACTTTAACTTCTGTAGTGGAAACAGCTTCAGTTGTTAGCATTGTAAACTGAGATCGCGATAACTGAGACTAAAAATCTACTAAGTTGATGAGTATAAATAAGAATTAAAAGTTGATCAAGGGCATACTATTGATAATCTTTAAATTTTCAGCCTGAAACGTTTTACACATACAGAAACTTCAATGGCTGAATTCATGAGTTGATTT] [-] EMBL CD112305 [TTTTCTTGTGACATCTTTATTAGTATCTATTCCAGAGGATTTGTCGATTTTCTTGCAATCAGCACGTTCTAATTTTCTTGCTTGTTCTTCTATTCTTACAACAGCTAACTGATGACTGTTGATATTGTGATGAATTATCTTAGTGACAAAGTAAGAGAGAGAAAAATAATTAGCCAAGAAAATTATAAAACTGCATAACTTATAAATGTTAAGCATTGATTAATAGGCAAAATTCAGACTTGATAACTTTAACTTCTGTAGTGGAAACAGCTTCAGTTGTTAGCATTGTAAACTGAGATCGCGATAACTGAGACTAAAAATCTACTAAGTTGATGAGTATAAATAAGAATTAAAAGTTGATCAAGGGCATACTATTGATAATCTTTAAATTTTCAGCCTGAAACGTTTTACACATACAGAAACTTCAATGGCTGAATTCATGAGTTGATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7157#0 ------------------------------------------------------------ consensus_7157#1 GCATCATTTGTGATAAATGATCATGTAATTCTTCGACTTGT-TTTAAACCTAATTCCATA 59 consensus_7157#2 -----------------TTTTCTTGTGACATCTTTATTAGTATCTATTCCAGAGGATTTG 43 consensus_7157#0 ----------------GAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCA 44 consensus_7157#1 CGGTCACGAATATCTTGAGCATGTTTTAACAATTGAGCATGATGTTCAGAGAAACGTTCA 119 consensus_7157#2 TCGATTTTCTTGCAATCAGCACGTTCTAATTTTCTTGCTTGTTCTTC-----TATTCTTA 98 **** *** *** * ** ** * *** * * * consensus_7157#0 AGATTAGTAGTTAATTGATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCT 104 consensus_7157#1 AGATTAGTAGTTAATTGATTAGATGATTCTGCTGCAGACTGATTAACTAACAAAGCAGCT 179 consensus_7157#2 CAACAGCTAACTGAT-GACT-GTTGATATTGTGATGAATTATCTTAGTGACAAAGTAAGA 156 * ** * ** ** * * **** ** * * * * * ****** * consensus_7157#0 GAATTTCGACGCAGTTCATCAAGCTCTGATCCAACTTTTACAAGTTCATCATAAACTTCC 164 consensus_7157#1 GAATTTCGACGCAGTTCATCAAGCT---GTTTA---CGTAGGGAAAAAGAGTAAAAAAGC 233 consensus_7157#2 GAGAGAAAA-ATAATTAGCCAAGAA---AATTA-----TAAAACTGCATAACTTATAAAT 207 ** * * ** **** * ** * * consensus_7157#0 ATGAAACGACG-TAACTGTTCACGTGCACTATCTGGTAAACCACCCATAATGCGTGCACC 223 consensus_7157#1 ACGAGTTAACT-TAAGCATGCATAAATAAAATGTAGTAA-TTACC---ATTGTCTACAAT 288 consensus_7157#2 GTTAAGCATTGATTAATAGGCAAAATTCAGACTTGATAACTT-----TAACTTCTGTAGT 262 * * * ** * * *** * * * consensus_7157#0 TAGTGGGGGCATCCGACTTTTTAACTGTCGAGTGCGACGTATAAGTTGATCCAACTGACC 283 consensus_7157#1 ------AAGCATATGACA----AATAGTTGAAGTAAAGACATTATTTACCTC---TGATC 335 consensus_7157#2 G---GAAACAGCTTCAGTTGTTAGCATTGTAAACTGAGATCGCGATAACTGA----GACT 315 * * * * * * ** consensus_7157#0 ATGAAAATTAAAGGTCTCACTCAATGCTTCTTCTAATGCTGCTTGTTTATTGCGTACACT 343 consensus_7157#1 -CAACTTTTACAAGTTCATCATAAACTTCCATGAAACGACG-TAACTGTTCACGTGCACT 393 consensus_7157#2 AAAAATCTACTAAGTTGAT----GAGTATAAATAAGAATTAAAAGTTGATCAAGGGCATA 371 * * * ** * * * * ** consensus_7157#0 CAGTTTCAAACGTTCCCATGCTTTATTCATTTGAATAATTTTATCTCGGATATCTGGTGT 403 consensus_7157#1 ATCTGGTAAAC-CACCCATAATGCGTGCACCTGGTGG----------GGGCATCCGAC-T 441 consensus_7157#2 CTATTGATAAT----CTTTAAATTTTCAGCCTGAAACGTTTT-----ACACATACAGAAA 422 * ** * * * ** ** consensus_7157#0 TTTTAAATCTGAAGTCTGTGATTTTCTTTTGACATCTTTATTAGTATCTATTCCAGAGGA 463 consensus_7157#1 TTTTAACTGTCGAGTGCGACGTATAAGTTGA----------------------------- 472 consensus_7157#2 CTTCAATGGCTGAATTCATGAGTTGATTT------------------------------- 451 ** ** * * * ** consensus_7157#0 TTTGTCGATTTTCTTGCAATCAGCACGTTCTAATTTTCTTGCTTGTTCTTCTATTCTTAC 523 consensus_7157#1 ------------------------------------------------------------ consensus_7157#2 ------------------------------------------------------------ consensus_7157#0 AACAGCTAACTGATGACTGTTGATATTGTGATGAATTATTTTAATGCGTGCTAAATCAGC 583 consensus_7157#1 ------------------------------------------------------------ consensus_7157#2 ------------------------------------------------------------ consensus_7157#0 TTCTAATCCTCGAATATTTGCCCGACGTATAGGTATTTGATCTACAGCTGTTTGCATTTG 643 consensus_7157#1 ------------------------------------------------------------ consensus_7157#2 ------------------------------------------------------------ consensus_7157#0 ATCAATCCATTTAATTAATCCATCAATAGCACTTTCAAATTCACCTAAACCAAGTAAAAC 703 consensus_7157#1 ------------------------------------------------------------ consensus_7157#2 ------------------------------------------------------------ consensus_7157#0 AGTTTGTAAACGATGACGTCTACTATTGCCGGAATCTAATAAATTGTCCCATCGTCGATT 763 consensus_7157#1 ------------------------------------------------------------ consensus_7157#2 ------------------------------------------------------------ consensus_7157#0 AGCTACAGTTAGATCAGATTGTAATGATGTAGTATTTTGTACTGGGACTGTTCCG 818 consensus_7157#1 ------------------------------------------------------- consensus_7157#2 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||