These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 650 fasta sequence [GCAGTTTCGACCCATCTCTCAGGAACCAATATTACAGATGCTGTGATATTTGTTCCACACACAAATGCACGGTCGATTTTCGATTGCCATCCACTTTCTTCAATTTCCTTAGAAATGTCAACATAATAGGAAGATATCTTCCTATTCGGATCTAGCAGGCAAGTTGTCTTGGCCATAACGTTGTCATCCAAAACCTCCAATTCAGAACACGAAGTGCCTGATAAACGAGTTATGATGAATCCAAGGTACCTTTCTCTCGACATACTTATTTCATCTTTAGAGTCAATCATAAAATTATTCACGTAACTATGGTAATATTGATTTGAGAATTTCAGTGAAACATATTGATGATCAAGGGATTTATTTACAAAGCCATTCATAACTGGATAAGTATTTATAATGGAGAGAATATTGATATGAACTATTTTCAAAAATTACTTATCCATCTTTTTTTTTTAAAATTCAGGTTGTTCGCAGGTATCTTGGCAGGTGAAGAATTTCAAAAGTAAGACGATGATGAAATAAAGTGATATCGAGAGATCAGGTGAATAAAGCAACGTTATCGTATTGAATCGACGTTCACTTTGTATGATACACACACATTTACTTCGTATGTTCAACTAACATTCACCTCATCTTCTCGTTCAAAG] [+] EMBL CD156197 [GCAGTTTCGACCCATCTCTCAGGAACCAATATTACAGATGCTGTGATATTTGTTCCACACACAAATGCACGGTCGATTTTCGATTGCCATCCACTTTCTTCAATTTCCTTAGAAATGTCAACATAATAGGAAGATATCTTCCTATTCGGATCTAGCAGGCAAGTTGTCTTGGCCATAACGTTGTCATCCAAAACCTCCAATTCAGAACACGAAGTGCCTGATAAACGAGTTATGATGAATCCAAGGTACCTTTCTCTCGACATACTTATTTCATCTTTAGAGTCAATCATAAAATTATTCACGTAACTATGGTAATATTGATTTGAGAATTTCAGTGAAACATATTGATGATCAAGGGATTTATTTACAAAGCCATTCATAACTGGATAAGTATTTATAATGGAGAGAATATTGATATGAACTATTTTCAAAAATTACTTATCCATCTTTTTTTTTTAAAATTCAGGTTGTTCGCAGGTATCTTGGCAGGTGAAGAATTTCAAAAGTAAGACGATGATGAAATAAAGTGATATCGAGAGATCAGGTGAATAAAGCAACGTTATCGTATTGAATC ] [+] EMBL CD148161 [ AATTTCAAAAGTAAGACGATGATGAAATAAAGTGATATCGAGAGATCAGGTGAATAAAGCAACGTTATCGTATTGAATCGACGTTCACTTTGTATGATACACACACATTTACTTCGTATGTTCAACTAACATTCACCTCATCTTCTCGTTCAAA ] [-] EMBL CD148152 [ ATTTCAAAAGTAAGACGATGATGAAATAAAGTGATATCGAGAGATCAGGTGAATAAAGCAACGTTATCGTATTGAATCGACGTTCACTTTGTATGATACACACACATTTACTTCGTATGTTCAACTAACATTCACCTCATCTTCTCGTTCAAAG] consensusID : consensus_7162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 262 fasta sequence [GTATTTATAATGGAGAGAATATTGATATGAACTATTTTCAAAAATTACTTATCCATCTTTTTTTTTTTAAAAATTCAGGTTGTCCGCAGGAATCTGGGCGGGGGAAGATTTTCAAAAGTAAGACGATGATGAAATAAGGGGAACCATAAAATTATCCACGTAACTAGGGAAATATTGATTGGAGAATTCCAGGGAAACATATGGAGGATCAGGGGATTTATTTACAAAGCCATTCATAACGGGATAAGTATTTATAAGGGAG] [+] EMBL CD120401 [GTATTTATAATGGAGAGAATATTGATATGAACTATTTTCAAAAATTACTTATCCATCTTTTTTTTTTTAAAAATTCAGGTTGTCCGCAGGAATCTGGGCGGGGGAAGATTTTCAAAAGTAAGACGATGATGAAATAAGGGGAACCATAAAATTATCCACGTAACTAGGGAAATATTGATTGGAGAATTCCAGGGAAACATATGGAGGATCAGGGGATTTATTTACAAAGCCATTCATAACGGGATAAGTATTTATAAGGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7162#0 GCAGTTTCGACCCATCTCTCAGGAACCAATATTACAGATGCTGTGATATTTGTTCCACAC 60 consensus_7162#1 ------------------------------------------------------------ consensus_7162#0 ACAAATGCACGGTCGATTTTCGATTGCCATCCACTTTCTTCAATTTCCTTAGAAATGTCA 120 consensus_7162#1 ------------------------------------------------------------ consensus_7162#0 ACATAATAGGAAGATATCTTCCTATTCGGATCTAGCAGGCAAGTTGTCTTGGCCATAACG 180 consensus_7162#1 ------------------------------------------------------------ consensus_7162#0 TTGTCATCCAAAACCTCCAATTCAGAACACGAAGTGCCTGATAAACGAGTTATGATGAAT 240 consensus_7162#1 ------------------------------------------------------------ consensus_7162#0 CCAAGGTACCTTTCTCTCGACATACTTATTTCATCTTTAGAGTCAATCATAAAATTATTC 300 consensus_7162#1 ------------------------------------------------------------ consensus_7162#0 ACGTAACTATGGTAATATTGATTTGAGAATTTCAGTGAAACATATTGATGATCAAGGGAT 360 consensus_7162#1 ------------------------------------------------------------ consensus_7162#0 TTATTTACAAAGCCATTCATAACTGGATAAGTATTTATAATGGAGAGAATATTGATATGA 420 consensus_7162#1 ------------------------------GTATTTATAATGGAGAGAATATTGATATGA 30 ****************************** consensus_7162#0 ACTATTTTCAAAAATTACTTATCCATCTTTTTTTTTT--AAAATTCAGGTTGTTCGCAGG 478 consensus_7162#1 ACTATTTTCAAAAATTACTTATCCATCTTTTTTTTTTTAAAAATTCAGGTTGTCCGCAGG 90 ************************************* ************** ****** consensus_7162#0 TATCTTGGCAGGTGAAGAATTTCAAAAGTAAGACGATGATGAAATAAAGTGA--TATCGA 536 consensus_7162#1 AATCTGGGCGGGGGAAGATTTTCAAAAGTAAGACGATGATGAAATAAGGGGAACCATAAA 150 **** *** ** ***** **************************** * ** ** * consensus_7162#0 GAGATC-AGGTGAATAAAGCAACGTTATCGTATTGAATCGACGTTCACTTTGTATGATAC 595 consensus_7162#1 ATTATCCACGTAACTAGGGAAATATTGAT-TGGAGAATTCCAGGGAAACATATGGAGGAT 209 *** * ** * ** * ** ** * **** * * * * * consensus_7162#0 ACACACATTTACTTCGTATGTTCAACTAACATTCACCTCATCTTCTCGTTCAAAG 650 consensus_7162#1 CAGGGGATTTATTTACAAAGCC--ATTCATAACGGGATAAGTATTTATAAGGGAG 262 ***** ** * * * * * * * * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||