cluster # 7162

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Schistosoma mansoni
cluster # 7162 cluster # 7162 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7162#0 length = 650 sequences # 3

consensus_7162#1 length = 262 sequences # 1

consensusID : consensus_7162#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 650
fasta sequence

                              [GCAGTTTCGACCCATCTCTCAGGAACCAATATTACAGATGCTGTGATATTTGTTCCACACACAAATGCACGGTCGATTTTCGATTGCCATCCACTTTCTTCAATTTCCTTAGAAATGTCAACATAATAGGAAGATATCTTCCTATTCGGATCTAGCAGGCAAGTTGTCTTGGCCATAACGTTGTCATCCAAAACCTCCAATTCAGAACACGAAGTGCCTGATAAACGAGTTATGATGAATCCAAGGTACCTTTCTCTCGACATACTTATTTCATCTTTAGAGTCAATCATAAAATTATTCACGTAACTATGGTAATATTGATTTGAGAATTTCAGTGAAACATATTGATGATCAAGGGATTTATTTACAAAGCCATTCATAACTGGATAAGTATTTATAATGGAGAGAATATTGATATGAACTATTTTCAAAAATTACTTATCCATCTTTTTTTTTTAAAATTCAGGTTGTTCGCAGGTATCTTGGCAGGTGAAGAATTTCAAAAGTAAGACGATGATGAAATAAAGTGATATCGAGAGATCAGGTGAATAAAGCAACGTTATCGTATTGAATCGACGTTCACTTTGTATGATACACACACATTTACTTCGTATGTTCAACTAACATTCACCTCATCTTCTCGTTCAAAG]

[+] EMBL CD156197             [GCAGTTTCGACCCATCTCTCAGGAACCAATATTACAGATGCTGTGATATTTGTTCCACACACAAATGCACGGTCGATTTTCGATTGCCATCCACTTTCTTCAATTTCCTTAGAAATGTCAACATAATAGGAAGATATCTTCCTATTCGGATCTAGCAGGCAAGTTGTCTTGGCCATAACGTTGTCATCCAAAACCTCCAATTCAGAACACGAAGTGCCTGATAAACGAGTTATGATGAATCCAAGGTACCTTTCTCTCGACATACTTATTTCATCTTTAGAGTCAATCATAAAATTATTCACGTAACTATGGTAATATTGATTTGAGAATTTCAGTGAAACATATTGATGATCAAGGGATTTATTTACAAAGCCATTCATAACTGGATAAGTATTTATAATGGAGAGAATATTGATATGAACTATTTTCAAAAATTACTTATCCATCTTTTTTTTTTAAAATTCAGGTTGTTCGCAGGTATCTTGGCAGGTGAAGAATTTCAAAAGTAAGACGATGATGAAATAAAGTGATATCGAGAGATCAGGTGAATAAAGCAACGTTATCGTATTGAATC                                                                            ]
[+] EMBL CD148161             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AATTTCAAAAGTAAGACGATGATGAAATAAAGTGATATCGAGAGATCAGGTGAATAAAGCAACGTTATCGTATTGAATCGACGTTCACTTTGTATGATACACACACATTTACTTCGTATGTTCAACTAACATTCACCTCATCTTCTCGTTCAAA ]
[-] EMBL CD148152             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATTTCAAAAGTAAGACGATGATGAAATAAAGTGATATCGAGAGATCAGGTGAATAAAGCAACGTTATCGTATTGAATCGACGTTCACTTTGTATGATACACACACATTTACTTCGTATGTTCAACTAACATTCACCTCATCTTCTCGTTCAAAG]




>consensus_7162#0
GCAGTTTCGACCCATCTCTCAGGAACCAATATTACAGATGCTGTGATATTTGTTCCACAC
ACAAATGCACGGTCGATTTTCGATTGCCATCCACTTTCTTCAATTTCCTTAGAAATGTCA
ACATAATAGGAAGATATCTTCCTATTCGGATCTAGCAGGCAAGTTGTCTTGGCCATAACG
TTGTCATCCAAAACCTCCAATTCAGAACACGAAGTGCCTGATAAACGAGTTATGATGAAT
CCAAGGTACCTTTCTCTCGACATACTTATTTCATCTTTAGAGTCAATCATAAAATTATTC
ACGTAACTATGGTAATATTGATTTGAGAATTTCAGTGAAACATATTGATGATCAAGGGAT
TTATTTACAAAGCCATTCATAACTGGATAAGTATTTATAATGGAGAGAATATTGATATGA
ACTATTTTCAAAAATTACTTATCCATCTTTTTTTTTTAAAATTCAGGTTGTTCGCAGGTA
TCTTGGCAGGTGAAGAATTTCAAAAGTAAGACGATGATGAAATAAAGTGATATCGAGAGA
TCAGGTGAATAAAGCAACGTTATCGTATTGAATCGACGTTCACTTTGTATGATACACACA
CATTTACTTCGTATGTTCAACTAACATTCACCTCATCTTCTCGTTCAAAG

consensusID : consensus_7162#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence

                              [GTATTTATAATGGAGAGAATATTGATATGAACTATTTTCAAAAATTACTTATCCATCTTTTTTTTTTTAAAAATTCAGGTTGTCCGCAGGAATCTGGGCGGGGGAAGATTTTCAAAAGTAAGACGATGATGAAATAAGGGGAACCATAAAATTATCCACGTAACTAGGGAAATATTGATTGGAGAATTCCAGGGAAACATATGGAGGATCAGGGGATTTATTTACAAAGCCATTCATAACGGGATAAGTATTTATAAGGGAG]

[+] EMBL CD120401             [GTATTTATAATGGAGAGAATATTGATATGAACTATTTTCAAAAATTACTTATCCATCTTTTTTTTTTTAAAAATTCAGGTTGTCCGCAGGAATCTGGGCGGGGGAAGATTTTCAAAAGTAAGACGATGATGAAATAAGGGGAACCATAAAATTATCCACGTAACTAGGGAAATATTGATTGGAGAATTCCAGGGAAACATATGGAGGATCAGGGGATTTATTTACAAAGCCATTCATAACGGGATAAGTATTTATAAGGGAG]




>consensus_7162#1
GTATTTATAATGGAGAGAATATTGATATGAACTATTTTCAAAAATTACTTATCCATCTTT
TTTTTTTTAAAAATTCAGGTTGTCCGCAGGAATCTGGGCGGGGGAAGATTTTCAAAAGTA
AGACGATGATGAAATAAGGGGAACCATAAAATTATCCACGTAACTAGGGAAATATTGATT
GGAGAATTCCAGGGAAACATATGGAGGATCAGGGGATTTATTTACAAAGCCATTCATAAC
GGGATAAGTATTTATAAGGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7162#0      GCAGTTTCGACCCATCTCTCAGGAACCAATATTACAGATGCTGTGATATTTGTTCCACAC 60
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      ACAAATGCACGGTCGATTTTCGATTGCCATCCACTTTCTTCAATTTCCTTAGAAATGTCA 120
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      ACATAATAGGAAGATATCTTCCTATTCGGATCTAGCAGGCAAGTTGTCTTGGCCATAACG 180
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      TTGTCATCCAAAACCTCCAATTCAGAACACGAAGTGCCTGATAAACGAGTTATGATGAAT 240
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      CCAAGGTACCTTTCTCTCGACATACTTATTTCATCTTTAGAGTCAATCATAAAATTATTC 300
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      ACGTAACTATGGTAATATTGATTTGAGAATTTCAGTGAAACATATTGATGATCAAGGGAT 360
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      TTATTTACAAAGCCATTCATAACTGGATAAGTATTTATAATGGAGAGAATATTGATATGA 420
consensus_7162#1      ------------------------------GTATTTATAATGGAGAGAATATTGATATGA 30
                                                    ******************************

consensus_7162#0      ACTATTTTCAAAAATTACTTATCCATCTTTTTTTTTT--AAAATTCAGGTTGTTCGCAGG 478
consensus_7162#1      ACTATTTTCAAAAATTACTTATCCATCTTTTTTTTTTTAAAAATTCAGGTTGTCCGCAGG 90
                      *************************************  ************** ******

consensus_7162#0      TATCTTGGCAGGTGAAGAATTTCAAAAGTAAGACGATGATGAAATAAAGTGA--TATCGA 536
consensus_7162#1      AATCTGGGCGGGGGAAGATTTTCAAAAGTAAGACGATGATGAAATAAGGGGAACCATAAA 150
                       **** *** ** ***** **************************** * **   **  *

consensus_7162#0      GAGATC-AGGTGAATAAAGCAACGTTATCGTATTGAATCGACGTTCACTTTGTATGATAC 595
consensus_7162#1      ATTATCCACGTAACTAGGGAAATATTGAT-TGGAGAATTCCAGGGAAACATATGGAGGAT 209
                         *** * ** * **  * **  **    *   ****    *   *   * *     * 

consensus_7162#0      ACACACATTTACTTCGTATGTTCAACTAACATTCACCTCATCTTCTCGTTCAAAG 650
consensus_7162#1      CAGGGGATTTATTTACAAAGCC--ATTCATAACGGGATAAGTATTTATAAGGGAG 262
                            ***** **   * *    * * * *      * *   * *       **