These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 512 fasta sequence [GGAATTTGCACGCTGTCGGAAGTAATCGGGTGCCGCGACGATATTATGGTGTATTTAATTTACCGCGGCCTCGAACCGTCGTTAGCGTTTAAGATTATGGAATCCGTCCGCAAAGGAAAAGGACTAACGCCAGAATTTGAAGAAGAAATGCGCAAACACGACGTACCAGAATGGTACATCGAATCAAGCAAAAAAATTAAGTATATGTTCCCTAAGGGTGCGACACGTTGCTAGTTTAATCCCAGTAGAAATGCTGGATAAAGGCTAGCCCGTGCAGAAGACAAATCTGCATGAGAACTACATGAGACGAGGCGGAGGTGTGAAATTCCCTCCCACCGTAGCAGGGTACGGTGAAACCCCCTAAGCACCGCGACTTGCAGGGATTGTCTCCTAACATGAACTGTAAGAGAGCTCGCTAAGGTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAAGCAACTATGGTGAGGCGACGAATCCTCGTTTGGAAAGG] [+] EMBL CD123741 [GGAATTTGCACGCTGTCGGAAGTAATCGGGTGCCGCGACGATATTATGGTGTATTTAATTTACCGCGGCCTCGAACCGTCGTTAGCGTTTAAGATTATGGAATCCGTCCGCAAAGGAAAAGGACTAACGCCAGAATTTGAAGAAGAAATGCGCAAACACGACGTACCAGAATGGTACATCGAATCAAGCAAAAAAATTAAGTATATGTTCCCTAAGGGTGCGACACGTTGCTAGTTTAATCCCAGTAGAAATGCTGGATAAAGGCTAGCCCGTGCAGAAGACAAATCTGCATGAGAACTACATGAGACGAGGCGGAGGTGTGAAATTCCCTCCCACCGTAGCAGGGTACGGTGAAACCCCCTAAGCACCGCGACTTGCAGGGATTGTCTCCTAACATGAACTGTAAGAGAGCTCGCTAAGGTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAAGCAACTATGGTGAGGCGACGAATCCTCGTTTGGAAAGG] [+] EMBL CD123686 [GGAATTTGCACGCTGTCGGAAGTAATCGGGTGCCGCGACGATATTATGGTGTATTTAATTTACCGCGGCCTCGAACCGTCGTTAGCGTTTAAGATTATGGAATCCGTCCGCAAAGGAAAAGGACTAACGCCAGAATTTGAAGAAGAAATGCGCAAACACGACGTACCAGAATGGTACATCGAATCAAGC AAAAAATTAAGTATATGTTCCCTAAGGGTGCGACACGTTGCTAGTTTAATCCCAGTAGAAATGCTGGATAAAGGCTAGCCCGCGCAGAAGACAAATCTGCATGAGAACTACATGAGACGAGGCGGAGGTGTGAAATTCCCTCCCACCGTAGCAGGGTACGGTGAAACCCCCTAAGCACCGCGACTTGCAGGGATTGTCTCCTAACATGAACTGTAAGAGAGCTCGCTAAGGTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAAGCAACTATGGTGAGGCGACGAATCCTCGTTTGGAAAGG] [-] EMBL CD124103 [ TGTGAAATTCCCTCCCACCGTAGCAGGGTACGGTGAAACCCCCTGAGCACCGCGACTTGCAGGGATTGTCTCCTAACATGAACTGTAAGAGAGCTCGCTAAGGTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAAGCAACTATGGAGAGGCGACGAATCCTCGT ] consensusID : consensus_7174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence [GACGTACCCAATGTAAGAGAGCTCGCTAAAGTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAACAACTATGGTGAGGCGACGAATCCTCGTTTGGAAAGGCTCGTAAGGACAACTCAGTCGGTAGGCTGAGGCTA] [+] EMBL CD123901 [GACGTACCCAATGTAAGAGAGCTCGCTAAAGTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAACAACTATGGTGAGGCGACGAATCCTCGTTTGGAAAGGCTCGTAAGGACAACTCAGTCGGTAGGCTGAGGCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7174#0 GGAATTTGCACGCTGTCGGAAGTAATCGGGTGCCGCGACGATATTATGGTGTATTTAATT 60 consensus_7174#1 ------------------------------------------------------------ consensus_7174#0 TACCGCGGCCTCGAACCGTCGTTAGCGTTTAAGATTATGGAATCCGTCCGCAAAGGAAAA 120 consensus_7174#1 ------------------------------------------------------------ consensus_7174#0 GGACTAACGCCAGAATTTGAAGAAGAAATGCGCAAACACGACGTACCAGAATGGTACATC 180 consensus_7174#1 ------------------------------------------------------------ consensus_7174#0 GAATCAAGCAAAAAAATTAAGTATATGTTCCCTAAGGGTGCGACACGTTGCTAGTTTAAT 240 consensus_7174#1 ------------------------------------------------------------ consensus_7174#0 CCCAGTAGAAATGCTGGATAAAGGCTAGCCCGTGCAGAAGACAAATCTGCATGAGAACTA 300 consensus_7174#1 ------------------------------------------------------------ consensus_7174#0 CATGAGACGAGGCGGAGGTGTGAAATTCCCTCCCACCGTAGCAGGGTACGGTGAAACCCC 360 consensus_7174#1 ------------------------------------------------------------ consensus_7174#0 CTAAGCACCGCGACTTGCAGGGATTGTCTCCTAACATGAACTGTAAGAGAGCTCGCTAAG 420 consensus_7174#1 ------------------------------GACGTACCCAATGTAAGAGAGCTCGCTAAA 30 * * ****************** consensus_7174#0 GTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAAGCAACT 480 consensus_7174#1 GTCGTCTTGAAAGCGTGACACGTAGACGTGAGTAAAGGCGGGGGTCCCAAAAAA-CAACT 89 ****************************************************** ***** consensus_7174#0 ATGGTGAGGCGACGAATCCTCGTTTGGAAAGG---------------------------- 512 consensus_7174#1 ATGGTGAGGCGACGAATCCTCGTTTGGAAAGGCTCGTAAGGACAACTCAGTCGGTAGGCT 149 ******************************** consensus_7174#0 ------- consensus_7174#1 GAGGCTA 156 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||