cluster # 7192

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Schistosoma mansoni
cluster # 7192 cluster # 7192 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7192#0 length = 715 sequences # 1

consensus_7192#1 length = 553 sequences # 4

consensusID : consensus_7192#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 715
fasta sequence

                              [TTTTTTTTTTTTTTCCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAGAGTGTGAAATACAAGAGTCTATCNGGGAAAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAAGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTANTTGATGGGTGAATATACATATCTGCATCTCCTTTGATAAGACTGATGGCTTTGAAGCCCGCACCACCTGCTGGTATAAAATGAACCGGTTTCGGATATACAAATTTGGTCAAATCTNTTAGGAGTTGATCGTTTAAATGTGAACGTGAATAAGTAATTAACAAATCGTNNTTTAACGAATGAACAGGACGAGAANTTATAGCCACTCGTAAATCAGATGATAATGCATATGAACCCCAACCCCAGTATGTTTNATTAAGAAACGGTGATGAATAATACCAGCTATTGGGTGATCATGAAGTACAATAC]

[+] EMBL AI394752             [TTTTTTTTTTTTTTCCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAGAGTGTGAAATACAAGAGTCTATCNGGGAAAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAAGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTANTTGATGGGTGAATATACATATCTGCATCTCCTTTGATAAGACTGATGGCTTTGAAGCCCGCACCACCTGCTGGTATAAAATGAACCGGTTTCGGATATACAAATTTGGTCAAATCTNTTAGGAGTTGATCGTTTAAATGTGAACGTGAATAAGTAATTAACAAATCGTNNTTTAACGAATGAACAGGACGAGAANTTATAGCCACTCGTAAATCAGATGATAATGCATATGAACCCCAACCCCAGTATGTTTNATTAAGAAACGGTGATGAATAATACCAGCTATTGGGTGATCATGAAGTACAATAC]




>consensus_7192#0
TTTTTTTTTTTTTTCCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAGA
GTGTGAAATACAAGAGTCTATCNGGGAAAAGGGATGAATTACATTGATATAATGTTGATA
ATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGT
TATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCA
CCTATCATACAACACACGGTCTGCAGTGGCGAAGAAGCCAATTTCGCTTGGTATACCTGG
AGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAAC
AGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTANTTGATGGGTGAAT
ATACATATCTGCATCTCCTTTGATAAGACTGATGGCTTTGAAGCCCGCACCACCTGCTGG
TATAAAATGAACCGGTTTCGGATATACAAATTTGGTCAAATCTNTTAGGAGTTGATCGTT
TAAATGTGAACGTGAATAAGTAATTAACAAATCGTNNTTTAACGAATGAACAGGACGAGA
ANTTATAGCCACTCGTAAATCAGATGATAATGCATATGAACCCCAACCCCAGTATGTTTN
ATTAAGAAACGGTGATGAATAATACCAGCTATTGGGTGATCATGAAGTACAATAC

consensusID : consensus_7192#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 553
fasta sequence

                              [TAGAGAATGAATTTGTCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAGAGTGTGAAATACAAGAGTCTATCGGGAAAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAGGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTAGTTGATGGGTGAATATACATATCTGCATCTCCTTTGATAAGACTGATGGCTNTGAAGCCCGCACCACCTGCTGGTATAAAATGAACCGGTTTCGGATATACAA-ATTTGGTCAAATCCTTTANGAGTGATTCGTTTAAATGTGAACGT]

[+] EMBL CD178498             [TAGAGAATGAATTTGTCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAGAGTGTGAAATACAAGAGTCTATCGGGAAAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAGGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTAGTTGATGGGTGAATATACATATCTGCATCTCCTTTGATAAGACTGATGGCTNTGAAGCCCGCACCACCTGCTGGTATAAAATGAACCGGTTTCGGATATACAA ATTTGGTCAAATCCTTTANGAGTGATTCGTTTAAATGTGAACGT]
[+] EMBL CD194944             [                                                                        AAGAGTCTATCGGGAAAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAGGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAAAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTAGTTGATGGGTGAATATACATATCTGCATCTCCTTTAATTACACTGATTACTCTGcat                                                                                           ]
[+] EMBL CD194908             [                                                                        AAGAGTCTATCGGGAAAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAGGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAAAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTAGTTGATGGGTGAATATACATATCTGCATCTCCTTTGAT                                                                                                              ]
[+] EMBL CD195266             [                                                                                       AAAGGGATGAATTACATTGATATAATGTTGATAATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGTTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTCGGCATTCCACCTATCATACAACACACGGTCTGCAGTGGCGAAGAGGCCAATTTCGCTTGGTATACCTGGAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAACAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTAGTTGATGGGTGAATATACATATCTGCATCTCCTTTGATAAGACTGATGGCTNTGAAGCCCGCACCACCTGCTGGTATAAAATGAAACCGTTTCNGATATACAANATTT GTCAAATCTTTTANGAGTGATTCGTTTAAATGT      ]




>consensus_7192#1
TAGAGAATGAATTTGTCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAG
AGTGTGAAATACAAGAGTCTATCGGGAAAAGGGATGAATTACATTGATATAATGTTGATA
ATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATGT
TATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCCA
CCTATCATACAACACACGGTCTGCAGTGGCGAAGAGGCCAATTTCGCTTGGTATACCTGG
AGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAAC
AGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTAGTTGATGGGTGAAT
ATACATATCTGCATCTCCTTTGATAAGACTGATGGCTNTGAAGCCCGCACCACCTGCTGG
TATAAAATGAACCGGTTTCGGATATACAAATTTGGTCAAATCCTTTANGAGTGATTCGTT
TAAATGTGAACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7192#0      -TTTTTTTTTTTTTTCCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAG 59
consensus_7192#1      TAGAGAATGAATTTGTCTTAGCAAAATATGTATGAAATTATCATTGTAATAGTTTTTCAG 60
                             *   ***  ********************************************

consensus_7192#0      AGTGTGAAATACAAGAGTCTATCNGGGAAAAGGGATGAATTACATTGATATAATGTTGAT 119
consensus_7192#1      AGTGTGAAATACAAGAGTCTATCGGG-AAAAGGGATGAATTACATTGATATAATGTTGAT 119
                      *********************** ** *********************************

consensus_7192#0      AATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATG 179
consensus_7192#1      AATAGGTTGTTACAATTGGTGATACCTAACAAATAGTAAAGGTATGAAGCAACCCGAATG 179
                      ************************************************************

consensus_7192#0      TTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCC 239
consensus_7192#1      TTATGTAGTGGAAAGAAATCTAACTTGAGGTTTTGAAGAAATCGGAAATCTTGGCATTCC 239
                      ************************************************************

consensus_7192#0      ACCTATCATACAACACACGGTCTGCAGTGGCGAAGAAGCCAATTTCGCTTGGTATACCTG 299
consensus_7192#1      ACCTATCATACAACACACGGTCTGCAGTGGCGAAGAGGCCAATTTCGCTTGGTATACCTG 299
                      ************************************ ***********************

consensus_7192#0      GAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAA 359
consensus_7192#1      GAGAAGATTTTGAGGTAAATCCAAGAGGAGAACCATCCAGTCCGGTAAGACGACCACCAA 359
                      ************************************************************

consensus_7192#0      CAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTANTTGATGGGTGAA 419
consensus_7192#1      CAGATTCCAAGACTGCTTGTGGTGCACAAACATCCCACCGACGTGTAGTTGATGGGTGAA 419
                      *********************************************** ************

consensus_7192#0      TATACATATCTGCATCTCCTTTGATAAGACTGATGGCTTTGAAGCCCGCACCACCTGCTG 479
consensus_7192#1      TATACATATCTGCATCTCCTTTGATAAGACTGATGGCTNTGAAGCCCGCACCACCTGCTG 479
                      ************************************** *********************

consensus_7192#0      GTATAAAATGAACCGGTTTCGGATATACAAATTTGGTCAAATCTNTTAGGAGTTGATCGT 539
consensus_7192#1      GTATAAAATGAACCGGTTTCGGATATACAAATTTGGTCAAATCCTTTANGAGTGATTCGT 539
                      *******************************************  *** ****   ****

consensus_7192#0      TTAAATGTGAACGTGAATAAGTAATTAACAAATCGTNNTTTAACGAATGAACAGGACGAG 599
consensus_7192#1      TTAAATGTGAACGT---------------------------------------------- 553
                      **************                                              

consensus_7192#0      AANTTATAGCCACTCGTAAATCAGATGATAATGCATATGAACCCCAACCCCAGTATGTTT 659
consensus_7192#1      ------------------------------------------------------------
                                                                                  

consensus_7192#0      NATTAAGAAACGGTGATGAATAATACCAGCTATTGGGTGATCATGAAGTACAATAC 715
consensus_7192#1      --------------------------------------------------------