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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 739 fasta sequence
[AAAATAGTGATAAGAAATGTGGAGCAACCCTTCAAATATACCCAGGTACCATCACGTATTACTAACCTCGTTAGCCAACTGTATGTTTTAATCCTCAATGCGGGAACCGTCTTAAGTTCGAATTACTTACGAATGAGTCAAAGTTCGTCGATTTCCAGAAAGTTCGAGTTCAGGAAACTCAGTCTGAATTACCTCGAGGTAGCATTCCACGCAACCTTGAAGTTATACTACGTGCAGACACAGTAGACCTTGCTCAACCTGGTGATCGATGTGAATTTATTGGGACTCTTATCGTTATCCCTGATGTTGGACAACTAGCGACACCTGGTGACAGATCGTTAGAGGGTAAGCCGTTACGAGGACGAGACAATCAAGAGATCGGTGGTGTGACTGGTCTAAAGGCTTTAGGAGTGCGTGAGCTTTCCTACAGAACAGCGTTTTTGGCTTGTACTGTAATACCTTCAAATGGAAGATATTTGCCATCAGATGAATTAGAAGAGTCTGATGCAATCTCTTACGAAGCATTATCAAAAAGACTGACGCCATCTGAGCTCGATACGA-TTTGTCAAATGAGTCAGGATCGAAAACTTCTTACAAACATGTGCAAGTCTCTTTTCCCGACTATTCACGGTGCTGATGAAGTTAAGAAAGGCATCTTGTTGATGCTCTGTGGTGGTGTGCCCAAGATTACTGAAGAAAAAACTCATCTCCGTGGA-GA-CTAAACGTATGTCTAGTTGGT]
[+] EMBL CD096661 [AAAATAGTGATAAGAAATGTGGAGCAACCCTTCAAATATACCCAGGTACCATCACGTATTACTAACCTCGTTAGCCAACTGTATGTTTTAATCCTCAATGCGGGAACCGTCTTAAGTTCGAATTACTTACGAATGAGTCAAAGTTCGTCGATTTCCAGAAAGTTCGAGTTCAGGAAACTCAGTCTGAATTACCTCGAGGTAGCATTCCACGCAACCTTGAAGTTATACTACGTGCAGACACAGTAGACCTTGCTCAACCTGGTGATCGATGTGAATTTATTGGGACTCTTATCGTTATCCCTGATGTTGGACAACTAGCGACACCTGGTGACAGATCGTTAGAGGGTAAGCCGTTACGAGGACGAGACAATCAAGAGATCGGTGGTGTGACTGGTCTAAAGGCTTTAGGAGTGCGTGAGCTTTCCTACAGAACAGCGTTTTTGGCTTGTACTGTAATACCTTCAAATGGAAGATATTTGCCATCAGATGAATTAGAAGAGTCTGATGCAATCTCTTACGAAGCATTATCANAAAGACTGACGCCATCTGAGCTCGATACGATTTTGTC AATGAGTCAGGATCGAAAACTTCTTAC AACATGTGCAAGTCTC TTTCCCGACTATTCACGGTGCTGATGAAGTTAAGAAGGGCATC TGNTGATGCTCTGTGGNTGTGTGCCCAAGATTACTG AG AAAAACTCATCTCCGTGNA GA CT AACGTAT TCTAGTT ]
[-] EMBL CD147098 [ TATACTACGTGCAGACACAGTAGACCTTGCTCAACCTGGTGATCGATGTGAATTTATTGGGACTCTTATCGTTATCCCTGATGTTGGACAACTAGCGACACCTGGTGACAGATCGTTAGAGGGTAAGCCGTTACGAGGACGAGACAATCAAGAGATCGGTGGTGTGACTGGTCTAAAGGCTTTAGGAGTGCGTGAGCTTTCCTACAGAACAGCGTTTTTGGCTTGTACTGTAATACCTTCAAATGGAAGATATTTGCCGTCAGATGAATTAGAAGAGTCTGATGCAATCTCTTACGAAGCATTATCAAAAAGACTGACGCCATCTGAGCTCGATACGA TTTGTCAAATGAGTCAGGATCGAAAACTTCTTACAAACATGTGCAAGTCTCTTTTCCCGACTATTCACGGTGCTGATGAAGTTAAGAAAGGCATCTTGTTGATGCTCTGTGGTGGTGTGCCCAAGATTACTGAAGAAAAAACTCATCTCCGTGGA GATCTAAACGTATGTCTAGTTGGT]
[-] EMBL CD147056 [ GACAATCAAGAGATCGGTGGTGTGACTGGTCTAAAGGCTTTAGGAGTGCGTGAGCTTTCCTACAGAACAGCGTTTTTGGCTTGTACTGTAATACCTTCAAATGGAAGATATTTGCCATCAGATGAATTAGAAGAGTCTGATGCAATCTCTTACGAAGCATTATCAAAAAGACTGACGCCATCTGAGCTCGATACGA TTTGTCAAATGAGTCAGGATCGAAAACTTCTTACAAACATGTGCAAGTCTCTTTTCCCGACTATTCACGGTGCTGATGAAGTTAAGAAAGGCATCTTGTTGATGCTCTGTGGTGGTGTGCCCAAGATTACTGAAGAAAAAACTCATCTCCGTGGAGGT CTAAACGTATGTCTAGTTGGT]
consensusID : consensus_7199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence
[AAAATAGTGATAAGAAATGTGGAGCAACCCTTCAAATATACCCAGCCAACTGTATGTTTTAATCCTCAATGCGGGAACCGTCTTAAGTTCGAATTACTTACGAATGAGTCAAAGTTCGTCGATTTCCAGAAAGTTCGAGTTCAGGAAACTCAGTCTGAATTACCTCGAGGTAGCATTCCACGCAACCTTGAAGTTATACTACGTGCAGACACAGTAGACCTTGCTCAACCTGGTGATCGATGTGAATTTATTGGGACTCTTATCGTTATCCCTGATGTTGGACAACTAGCGACACCTGGTGACAGATCGTTAGAGGGTAAGCCGTTACGAGGACGAGACAATCAAGAGATCGGTGGTGTGACTGGTCTAAAGGCTTTAGGAGTGCGTGAGCTTTCCTACAGAACAGCGTTTTTGGCTTGTACTGTAATACCTTCAAATGGAAGATATTTGCCATCAGATGAATTAGAAGAGTCTGATGCAATCTCTTACGAAGCATTATCAAAAAGACTGACGCCATCTGAGCTCGATACGATTTGTCAAATGAGTCAGGATCGAAAACTTCTTACAACATGTGCAAGTCTCTTTTTCCGACTATTCACGGTGCTGATGAAGTTAAGAAAGGCATCTTGTTGATGCTCTGTGGTGGGTGTGCCCAGATTTACTGANGAAAACTCATCTCCGTGGAGATCTAACGTATGTCTAGTTGG]
[+] EMBL CD096319 [AAAATAGTGATAAGAAATGTGGAGCAACCCTTCAAATATACCCAGCCAACTGTATGTTTTAATCCTCAATGCGGGAACCGTCTTAAGTTCGAATTACTTACGAATGAGTCAAAGTTCGTCGATTTCCAGAAAGTTCGAGTTCAGGAAACTCAGTCTGAATTACCTCGAGGTAGCATTCCACGCAACCTTGAAGTTATACTACGTGCAGACACAGTAGACCTTGCTCAACCTGGTGATCGATGTGAATTTATTGGGACTCTTATCGTTATCCCTGATGTTGGACAACTAGCGACACCTGGTGACAGATCGTTAGAGGGTAAGCCGTTACGAGGACGAGACAATCAAGAGATCGGTGGTGTGACTGGTCTAAAGGCTTTAGGAGTGCGTGAGCTTTCCTACAGAACAGCGTTTTTGGCTTGTACTGTAATACCTTCAAATGGAAGATATTTGCCATCAGATGAATTAGAAGAGTCTGATGCAATCTCTTACGAAGCATTATCAAAAAGACTGACGCCATCTGAGCTCGATACGATTTGTCAAATGAGTCAGGATCGAAAACTTCTTACAACATGTGCAAGTCTCTTTTTCCGACTATTCACGGTGCTGATGAAGTTAAGAAAGGCATCTTGTTGATGCTCTGTGGTGGGTGTGCCCAGATTTACTGANGAAAACTCATCTCCGTGGAGATCTAACGTATGTCTAGTTGG]
[+] EMBL CD096374 [AAAATAGTGATAAGAAATGTGGAGCAACCCTTCAAATATACCCAGCCAACTGTATGTTTTAATCCTCAATGCGGGAACCGTCTTAAGTTCGAATTACTTACGAATGAGTCAAAGTTCGTCGATTTCCAGAAAGTTCGAGTTCAGGAAACTCAGTCTGAATTACCTCGAGGTAGCATTCCACGCAACCTTGAAGTTATACTACGTGCAGACACAGTAGACCTTGCTCAACCTGGTGATCGATGTGAATTTATTGGGACTCTTATCGTTATCCCTGATGTTGGACAACTAGCGACACCTGGTGACAGATCGTTAGAGGGTAAGCCGTTACGAGGACGAGACAATCAAGAGATCGGTGGTGTGACTGGTCTAAAGGCTTTAGGAGTGCGTGAGCTTTCCTACAGAACAGCGTTTTTGGCTTGTACTGTAATACCTTCAAATGGAAGATATTTGCCATCAGATGAATTAGAAGAGTCTGATGNCATCTCTTACGAAGCATTATCAAAAAGACTGACGCCATCTGAGCTCGATACGATTTGTCAAATGAGTCAGGATCGAAAACTTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7199#0 AAAATAGTGATAAGAAATGTGGAGCAACCCTTCAAATATACCCAGGTACCATCACGTATT 60
consensus_7199#1 AAAATAGTGATAAGAAATGTGGAGCAACCCTTCAAATATACCCAG--------------- 45
*********************************************
consensus_7199#0 ACTAACCTCGTTAGCCAACTGTATGTTTTAATCCTCAATGCGGGAACCGTCTTAAGTTCG 120
consensus_7199#1 --------------CCAACTGTATGTTTTAATCCTCAATGCGGGAACCGTCTTAAGTTCG 91
**********************************************
consensus_7199#0 AATTACTTACGAATGAGTCAAAGTTCGTCGATTTCCAGAAAGTTCGAGTTCAGGAAACTC 180
consensus_7199#1 AATTACTTACGAATGAGTCAAAGTTCGTCGATTTCCAGAAAGTTCGAGTTCAGGAAACTC 151
************************************************************
consensus_7199#0 AGTCTGAATTACCTCGAGGTAGCATTCCACGCAACCTTGAAGTTATACTACGTGCAGACA 240
consensus_7199#1 AGTCTGAATTACCTCGAGGTAGCATTCCACGCAACCTTGAAGTTATACTACGTGCAGACA 211
************************************************************
consensus_7199#0 CAGTAGACCTTGCTCAACCTGGTGATCGATGTGAATTTATTGGGACTCTTATCGTTATCC 300
consensus_7199#1 CAGTAGACCTTGCTCAACCTGGTGATCGATGTGAATTTATTGGGACTCTTATCGTTATCC 271
************************************************************
consensus_7199#0 CTGATGTTGGACAACTAGCGACACCTGGTGACAGATCGTTAGAGGGTAAGCCGTTACGAG 360
consensus_7199#1 CTGATGTTGGACAACTAGCGACACCTGGTGACAGATCGTTAGAGGGTAAGCCGTTACGAG 331
************************************************************
consensus_7199#0 GACGAGACAATCAAGAGATCGGTGGTGTGACTGGTCTAAAGGCTTTAGGAGTGCGTGAGC 420
consensus_7199#1 GACGAGACAATCAAGAGATCGGTGGTGTGACTGGTCTAAAGGCTTTAGGAGTGCGTGAGC 391
************************************************************
consensus_7199#0 TTTCCTACAGAACAGCGTTTTTGGCTTGTACTGTAATACCTTCAAATGGAAGATATTTGC 480
consensus_7199#1 TTTCCTACAGAACAGCGTTTTTGGCTTGTACTGTAATACCTTCAAATGGAAGATATTTGC 451
************************************************************
consensus_7199#0 CATCAGATGAATTAGAAGAGTCTGATGCAATCTCTTACGAAGCATTATCAAAAAGACTGA 540
consensus_7199#1 CATCAGATGAATTAGAAGAGTCTGATGCAATCTCTTACGAAGCATTATCAAAAAGACTGA 511
************************************************************
consensus_7199#0 CGCCATCTGAGCTCGATACGATTTGTCAAATGAGTCAGGATCGAAAACTTCTTACAAACA 600
consensus_7199#1 CGCCATCTGAGCTCGATACGATTTGTCAAATGAGTCAGGATCGAAAACTTCTTACAA-CA 570
********************************************************* **
consensus_7199#0 TGTGCAAGTCTCTTTTCCCGACTATTCACGGTGCTGATGAAGTTAAGAAAGGCATCTTGT 660
consensus_7199#1 TGTGCAAGTCTCTTTTTCCGACTATTCACGGTGCTGATGAAGTTAAGAAAGGCATCTTGT 630
**************** *******************************************
consensus_7199#0 TGATGCTCTGTGGTGG-TGTGCCCAAGATTACTGAAGAAAAAACTCATCTCCGTGGAGAC 719
consensus_7199#1 TGATGCTCTGTGGTGGGTGTGCCCAGATTTACTGANGAAAA--CTCATCTCCGTGGAGAT 688
**************** ******** ******* ***** ****************
consensus_7199#0 TAAACGTATGTCTAGTTGGT 739
consensus_7199#1 CTAACGTATGTCTAGTTGG- 707
*****************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||