These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 578 fasta sequence [CTACTGTTAATGAACAAACAGTTTATGGATTAGAACCTTCATTACAAACAATATTACCAACTACTATCACAATGAGTACAGATATGTTATACCTTGGTTCTGTTGAAGTAGATCGTCTTGAAAATATGAATGCAGCAATTCGTGGAATTGGAAAAATTCTAAGTTTAGCACAAACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGATGGTATTACATTTACTGAAAAATATAACGTGCCGTATGGAGGAAAACTATTTAACCAATTAATTATTATGGTGTGAATTAAGTTCCAGAAATTCGAGATTTAATGGAGGCTGATTACGTTCTAAAGGAATGTATGGTTCAAAATATTGGCATTAGTTGCACGTAAACACGTTTTTGGTTACATGAAAATGTTGTTTATGTATTTTGTGAATTGATCATAATCATTCAGCTTTAAATTTAGTACGTTCCATTAATACTATATTCCTACTTTAGGGGTTTATTTGTTCTTCATCATACTACCAGTAGTATTAAACATTCGTCTTCTTCTTCTTCTCAGAATGTCCATC] [-] EMBL CD194107 [CTACTGTTAATGAACAAACAGTTTATGGATTAGAACCTTCATTACAAACAATATTACCAACTACTATCACAATGAGTACAGATATGTTATACCTTGGTTCTGTTGAAGTAGATCGTCTTGAAAATATGAATGCAGCAATTCGTGGAATTGGAAAAATTCTAAGTTTAGCACAAACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGATGGTATTACATTTACTGAAAAATA ] [+] EMBL AI820478 [ AAGTAGATCGTCTCGAAAATATGAATGCAGCAATTCGTGGAATTGGAAAAATTCTAAGTTTAGCACAAACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGATGGGATTACATTTACTGGAAAATATAACGTGCCGTATGGAGGAAAACTATTTAACCAATTAATTATTATGGTGTGAATTAAGTTCCAGAAATTCGAGATTTAATGGAGGCTGATTACGTTCTAAAGGAATGTATGGTTCAAAATATTGGCATTAGTTGCACGTAAACACGTTTTTGGTTACATGAAAATGTTGTTTATGTATTTTGTGAATTGATCATAATCATTCAGCTTTAAATTTAGTACGTTCCATTAATACTATATTCCTACTTTAGGGGTTTATTTGTTCTTCATCATACTACCAGTAGTATTAAACATTCGTCTTCTTCTTCTTCTCAGAATGTCCATC] consensusID : consensus_7200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [AGATCCAGAAAATCGAGAATTTAATGATGCTGAATTACGATCTAAAGGAATGTATGGTTCAAAAATATTGGCATTAGTTGCACGTAAACAACGTTTTTGGTTACATGAAAATGTTGTTTATGTATTTTGTGAAAATTGATCATAATCATTCAGCTTTAAAATTAGTACGNTTCCATTAATACTATATTTCCTAATTTAAGGGATTAATGGATCTTTATTAATACTATCTATAGTATTATACAATTCGTCTTCTTCTTCTTCTTCATGTAATGTTCTATCTCTACATATAATGAAGGATCTCGAACTTCAACAATGATGAATATAAAGTTCCTTTTCAATTTCATTTCTTCTTATCTTTATCAAAAAAGAGATAAACTTTCATTATATGATTAACTTATATTTAACATGGAAACAATTCATATCCATAGGATGATGATGATCATC] [+] EMBL CD168367 [AGATCCAGAAAATCGAGAATTTAATGATGCTGAATTACGATCTAAAGGAATGTATGGTTCAAAAATATTGGCATTAGTTGCACGTAAACAACGTTTTTGGTTACATGAAAATGTTGTTTATGTATTTTGTGAAAATTGATCATAATCATTCAGCTTTAAAATTAGTACGNTTCCATTAATACTATATTTCCTAATTTAAGGGATTAATGGATCTTTATTAATACTATCTATAGTATTATACAATTCGTCTTCTTCTTCTTCTTCATGTAATGTTCTATCTCTACATATAATGAAGGATCTCGAACTTCAACAATGATGAATATAAAGTTCCTTTTCAATTTCATTTCTTCTTATCTTTATCAAAAAAGAGATAAACTTTCATTATATGATTAACTTATATTTAACATGGAAACAATTCATATCCATAGGATGATGATGATCATC] consensusID : consensus_7200#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 370 fasta sequence [AAGTAGATCGTCTCTGAAAATATGAATGCAGCAATTCG-TGGAATTGGAAAAATTCTAAGTTTAGCACAAACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGATGGTATTACATTTACTGAAAAATATAAACGTGCCGTATGGAGAAAAACTATTAAACCCAATTATTTATTAAGGTGTGGATTAGATCCAGAAATCCGAGAATTTAATGATGCTGATTACGATCTAAAGGAATGTATGGTTCAAAAATATTGGCATTAGTTGCACGTAAACAACGTTTTTGGTAAAAGAAAATGTTGTTTATGCATTGGGGAAATGGACCAAAACCACCGAGCTCAAATAAGGA] [+] EMBL AI882630 [AAGTAGATCGTCTCTGAAAATATGAATGCAGCAATTCG TGGAATTGGAAAAATTCTAAGTTTAGCACAAACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGATGGTATTACATTTACTGAAAAATATAAACGTGCCGTATGGAGAAAAACTATTAAACCCAATTATTTATTAAGGTGTGGATTAGATCCAGAAATCCGAGAATTTAATGATGCTGATTACGATCTAAAGGAATGTATGGTTCAAAAATATTGGCATTAGTTGCACGTAAACAACGTTTTTGGTAAAAGAAAATGTTGTTTATGCATTGGGGAAATGGACCAAAACCACCGAGCTCAAATAAGGA] [+] EMBL AI820477 [AAGTAGATCGTCT TGAAAATATGAATGCAGCAATTAGCTGGAATTGGAAAAATTCTAAGTTTAGCACAAACATATTCAGATGGTTTATCACAACGATGTGAAGTAACAATTAAAGTGATACCACATGATGGTATTACATTTACTGCAAAATATAAACGTGCCCTATGGAGAAAACCTATT ACCCCCATTATTTATTATGGTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7200#0 CTACTGTTAATGAACAAACAGTTTATGGATTAGAACCTTCATTACAAACAATATTACCAA 60 consensus_7200#2 ------------------------------------------------------------ consensus_7200#1 ----------------------------------------------------------AG 2 consensus_7200#0 CTACTATCACAATGAGTACAGATATGTTATACCTTGGTTCTGTTGAAGTAGATCGTCT-T 119 consensus_7200#2 ---------------------------------------------AAGTAGATCGTCTCT 15 consensus_7200#1 ATCCAGAAAATCGAGAATTTAATGATGCTGAATTACGATCTAAAGGAATGTATGGTTC-- 60 * * ** ** consensus_7200#0 GAAAATATGAATGC-AGCAATTCGTGGAA------TTGGAAAAATTCTAAGTTTAGCACA 172 consensus_7200#2 GAAAATATGAATGC-AGCAATTCGTGGAA------TTGGAAAAATTCTAAGTTTAGCACA 68 consensus_7200#1 AAAAATATTGGCATTAGTTGCACGTAAACAACGTTTTTGGTTACATGAAAATGTTGTTTA 120 ******* ** *** * ** * * * ** * * * * consensus_7200#0 AACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGA 232 consensus_7200#2 AACATATTCAGATGGTTTACCAAAACGATGTGAAGTACAAATTAAAGTGATACCACATGA 128 consensus_7200#1 TGTATTTTGTGAAAATTGATCATAATCATTCAGCTTTAAAATTAGTACGNTTCCAT-TAA 179 ** ** ** ** * ** ** ** * ****** * * *** * * consensus_7200#0 TGGTAT-TACATTTACTGAAAAATATAA-CGTGCCGTATGGAGGAAAACTATTTAACC-A 289 consensus_7200#2 TGGTAT-TACATTTACTGAAAAATATAAACGTGCCGTATGGAGAAAAACTATTAAACCCA 187 consensus_7200#1 TACTATATTTCCTAATTTAAGGGATTAATGGATCTTTATTAATACTATCTATAGTATTAT 239 * *** * * * * ** *** * * *** * * **** * consensus_7200#0 ATTAATTATTATGGTGTGAATTAAGTTCCAGAA----ATTCGAGATTTAATGGAGGCTGA 345 consensus_7200#2 ATTATTTATTAAGGTGTGGATTA-GATCCAGAA----ATCCGAGAATTTAATGATGCTGA 242 consensus_7200#1 ACAATTCGTCTTCTTCTTCTTCTTCATGTAATGTTCTATCTCTACATATAATGAAG--GA 297 * * * * * * * * * ** * * ** * ** consensus_7200#0 TTACGTTCTAAAGGAATGTATGGTTCAAAA-TATTGGCATTAGTTGCACGTAAACA-CGT 403 consensus_7200#2 TTACGATCTAAAGGAATGTATGGTTCAAAAATATTGGCATTAGTTGCACGTAAACAACGT 302 consensus_7200#1 TCTCGAACTTCAACAATG-ATGAATATAAAGT-TCCTTTTCAATTTCATTTCTTCT-TAT 354 * ** ** * **** *** * *** * * * * ** ** * * * consensus_7200#0 TTTTGGTTACATGAAAATGTTGTTTATGTATTTTGTGAATTGATCATAATCATTCAGCTT 463 consensus_7200#2 TTTTGGTAA-AAGAAAATGTTGTTTATGCATTGGGGAAATGGACCAAAACCACCGAGCTC 361 consensus_7200#1 CTTTATCAAAAAAGAGATAAACTTT---CATTATATGATTAACTTATATTTAACATGGAA 411 *** * * * ** *** *** * * * * * * consensus_7200#0 TAAATTTAGTACGTTCCATTAATACTATATTCCTACTTTAGGGGTTTATTTGTTCTTCAT 523 consensus_7200#2 AAA--TAAGGA------------------------------------------------- 370 consensus_7200#1 ACAATTCATATCCATAGGATGATGATGATCATC--------------------------- 444 * * * consensus_7200#0 CATACTACCAGTAGTATTAAACATTCGTCTTCTTCTTCTTCTCAGAATGTCCATC 578 consensus_7200#2 ------------------------------------------------------- consensus_7200#1 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||