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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7203#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 893 fasta sequence
[AGTTATATTTACAGCAATATTTTTACAAGTTATGTATCTTTTTAGTTAACGGGTTTTGGTGCACTCAATTTATTTAACCTGTGGTTTGGTGTCCAGTGTCCCAAACTTTGGTTAGCATAATAATCCATGGGATAGGCTTCAGATAAATCTCTAGGCCAAAAAACTTGCTCATTTAAAGCAACAAATGCTTCGTATGGTGTAAGTAAAGGTTTAGTGAACTCAACACCCCAGTCAATACTAAGACGAGGACATGCAACCTGAATCCAGGCGTCTACTTGTTCATCGAAAAGCGCTAATTTACTTGGAATTATTTCAGACAGCAATAGTACGATGTAAGTCTTCCCTGATTTTTCCAATTCTATCTGAAGTTGTTTCACAACAGCTGGTGACCCTTGTTTTCCAAGTGTACACTTCATAGGAGATCAAACGTAAGTTCTCCAGGTTTCGTGGTATTTTATTGCTTAACCATTAGGCCAGAGTTCGTTACCTCTGAGGCGATCGATTGGGCAGAATACAGTTTCGGAAGGAAATTATCAGGCAAATACACTACAGGGTTATGTAATCAAAATGATGGTAATAAAAGCATAAATTTTAGTTTACTTACCCAATATTATCCCGAAATTGACAGCATTTCTTGCAGTATCAACGGCTTTTTTTCTATGTTTACGCATTTCTTTATGATCATAGTATTCACGCGTAAATGACTTATCGTAAGGATCATAACGATAAGCAGCTAACAATGGATTAGATATCATAATGGATTCAAGATGAAAGCGACCATCGCCCACGTAGATTAGGGCATCAACACTTTCTACTTTAGGAGATGTACATCCAAGTAGTTTCACCAGGCGATAAAGAGAAGGCACTGAGGAATGGTAACTAAGTAACCGCCT]
[+] EMBL CD075919 [AGTTATATTTACAGCAATATTTTTACAAGTTATGTATCTTTTTAGTTAACGGGTTTTGGTGCACTCAATTTATTTAACCTGTGGTTTGGTGTCCAGTGTCCCAAACTTTGGTTAGCATAATAATCCATGGGATAGGCTTCAGATAAATCTCTAGGCCAAAAAACTTGCTCATTTAAAGCAACAAATGCTTCGTATGGTGTAAGTAAAGGTTTAGTGAACTCAACACCCCAGTCAATACTAAGACGAGGACATGCAACCTGAATCCAGGCGTCTACTTGTTCATCGAAAAGCGCTAATTTACTTGGAATTATTTCAGACAGCAATAGTACGATGTAAGTCTTCCCTGATTTTTCCAATTCTATCTGAAGTTGTTTCACAACAGCTGGTGACCCTTGTTTTCCAAGTGTACACTTCATAGGAGATCAAACGTAAGTTCTCCAGGTTTCGTGGTATTTTATTGCTTAACCATTAGGCCAGAGTTCGTTACCTCTGAGGCGATCGATTGGGCAGAATACAGTTTCGGAAGGAAATTATCAGGCAAATACACTACAGGGTTATGTAATCAAAATGATGGTAATAAAAGCATAAATTTTAGTTTACTTACCCAATATTATCCCGAAATTGACAGCA ]
[-] EMBL CD185686 [ TGCTCATTTAAAGCAACAAATGCTTCGTATGGTGTAAGTAAAGGTTTAGTGAACTCAACACCCCAGTCAATACTAAGACGAGGACATGCAACCTGAATCCAGGCGTCTACTTGTTCATCGAAAAGCGCTAATTTACTTGGAATTATTTCAGACAGCAATAGTACGATGTA ]
[-] EMBL CD082317 [ GTTCATCGAAAAGCGCTAATTTACTTGGAATTATTTCAGACAGCAATAGTACGATGTAAGTCTTCCCTGATTTTTCCAATTCTATCTGAAGTTGTTTCACAACAGCTGGTGACCCTTGTTTTCCAAGTGTACACTTCATAGGAGATCAAACGTAAGTTCTCCAGGTTTCGTGGTATTTTATTGCTTAACCATTAGGCCAGAGTTCGTTACCTCTGAGGCGATCGATTGGGCAGAATACAGTTTCGGAAGGAAATTATCAGGCAAATACACTACAGGGTTATGTAATCAAAATGATGGTAATAAAAGCATAAATTTTAGTTTACTTACCCAATATTATCCCGAAATTGACAGCATTTCTTGCAGTATCAACGGCTTTTTTTCTATGTTTACGCATTTCTTTATGATCATAGTATTCACGCGTAAATGACTTATCGTAAGGATCATAACGATAAGCAGCTAACAATGGATTAGATATCATAATGGATTCAAGATGAAAGCGACCATCGCCCACGTAGATTAGGGCATCAACACTTTCTACTTTAGGAGATGTACATCCAAGTAGTTTCACCAGGCGATAAAGAGAAGGCACTGAGGAATGGTAACTAAGTAACCGCCT]
consensusID : consensus_7203#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence
[CAGCTGGGGACCCTTGTTTTCCAAGTGTACCCAATATTATCCCGAAATTGACAGCATTTCTTGCAGTATCAACGGCTTTTTTTCTATGTTTACGCATTTCTTTATGATCATAGTATTCACGCGTAAATGACTTATCGTAAGGATCATAACGATAAGCAGCTAACAATGGATTAGATATCATAATGGATTCAAGATGAAAGCGACCATCGCCCACGTAGATTAGGGCATCAACACCTTCTACTTTAGGAGATGTACATCCAAGTATTTCACCAGGCGATAAAGGAAGGCACTGAGGAATGGTAACTAAGTAACCGGCTTCTAATAATGGTTGTTTAGCAGTCTGCAAACTAGTAACAAATTGTATTGTAGAAACAAGGGCTAAACGAGAAGATTTCTCAAAGTTAGCCTTTACACTATCTATGAGATGGACGATATCGATTTGAATATCAACAAATACGTATAG-ACGGCCTCGGAGTCCAATGGTATCAAGCAACTATGACCATAATGTACAAGTAAGTCAACACCAAGAGCTTTTGCAGTCAGCTCCCCTACACAACAAGCTCCATAAGTCACATCGCCCAAAATTACAACATCAATATCTTTAATACTGTCCTCAGCTACAGTAGAACTGTTAGTAGAGATAGAAAGAGCGGGACCTGAGGTTTCGCCACAACGAATAAAGTAATTTCGGATGATTTCGGAAATCGGTATTGCAAACAA]
[-] EMBL CD083478 [CAGCTGGGGACCCTTGTTTTCCAAGTGTACCCAATATTATCCCGAAATTGACAGCATTTCTTGCAGTATCAACGGCTTTTTTTCTATGTTTACGCATTTCTTTATGATCATAGTATTCACGCGTAAATGACTTATCGTAAGGATCATAACGATAAGCAGCTAACAATGGATTAGATATCATAATGGATTCAAGATGAAAGCGACCATCGCCCACGTAGATTAGGGCATCAACACCTTCTACTTTAGGAGATGTACATCCAAGTATTTCACCAGGCGATAAAGGAAGGCACTGAGGAATGGTAACTAAGTAACCGGCTTCTAATAATGGTTGTTTAGCAGTCTGCAAACTAGTAACAAATTGTATTGTAGAAACAAGGGCTAAACGAGAAGATTTCTCAAAGTTAGCCTTTACACTATCTATGAGATGGACGATATCGATTTGAATATCAACAAATACGTATAG ACGGCCTCG ]
[-] EMBL CD178604 [ TGGTAACTAAGTAACCGGCTTCTAATAATGGTTGTTTAGCAGTCTGCAAACTAGTAACAAATTGTATTGTAGAAACAAGGGCTAAACGAGAAGATTTCTCAAAGTTAGCCTTTACACTATCTATGAGATGGACGATATCGATTTGAATATCAACAAATACGTATAGAACGGAAATTGAGTCCAATGGTATCAAGCAACTATGACCATAATGTACAAGTAAGTCAACACCAAGAGCTTTTGCAGTCAGCTCCCCTACACAACAAGCTCCATAAGTCACATCGCCCAAAATTACAACATCAATATCTTTAATACTGTCCTCAGCTACAGTAGAACTGTTAGTAGAGATAGAAAGAGCGGGACCTGAGGTTTCGCCACAACGAATAAAGTAATTTCGGATGATTTCGGAAATCGGTATTGCAAACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7203#0 AGTTATATTTACAGCAATATTTTTACAAGTTATGTATCTTTTTAGTTAACGGGTTTTGGT 60
consensus_7203#1 --------------------------CAGCTGGGGACCCTTGTTTTCCA--------AGT 26
** * * * * ** * * * **
consensus_7203#0 GCACTCAAT-TTATTT---AACCTGTGGTTTGGTGTCCAGTGTCCCAAACTTTGGTTAGC 116
consensus_7203#1 GTACCCAATATTATCCCGAAATTGACAGCATTTCTTGCAGTATCAACGGCTTTT-TTTCT 85
* ** **** **** ** * * * **** ** **** **
consensus_7203#0 ATAATAATCCATGGGATAGGCTTCAGATAAATCTCTAGGCCAAAAAACTTGCTCATTTAA 176
consensus_7203#1 ATGTTTACGCATTTCTTTATGATCATA---GTATTCACGCGTAAA---TGACTTATCGTA 139
** * * *** * *** * * * * ** *** * ** ** *
consensus_7203#0 AGCAACAAATGCTTCGTATGGTGTAAGTAAAGGTTTAGTGAACTCAACACCCCAGTCAAT 236
consensus_7203#1 AGGATCATA---ACGATAAGCAGCTAACAATGGATTAGATATCATAATGG---ATTCAAG 193
** * ** * ** * * * ** ** **** * * ** * ****
consensus_7203#0 ACTAAGACGAGGACATGCAACCTGAATCCAGGCGTCTACTTGTTCATCGAAAAGCGCTAA 296
consensus_7203#1 ATGAAAGCGACCATCGCCCACGTAGATTAGGGCATCAACACCTTCTACTTTAGGAGATGT 253
* ** *** * * ** * ** *** ** ** *** * * * * *
consensus_7203#0 TTTACTTGGAATTATTTCAGACAGCAATAGTACGATGTAAG---TCTTCCCTGATTTTTC 353
consensus_7203#1 ACATCCAAGTATTTCACCAGGCGATAAAGGAAGGCACTGAGGAATGGTAACTAAGTAACC 313
* * *** *** * ** * * * * ** * * ** * * *
consensus_7203#0 CAATTCTATCTGAAGTTGTTTCACAACAGCTGGTGACCCTTGTTTTCCAAGTGTACACTT 413
consensus_7203#1 GGCTTCTAATAATGGTTGTTT---AGCAGTCTGCAAAC--TAGTAACAAATTGTATTGTA 368
***** ******* * *** * * * * * * ** **** *
consensus_7203#0 CATAGGAGATC-AAACGTAAGTTCTCCAGGTTTCGTGGTATTTTATTGCTTAACCATTAG 472
consensus_7203#1 GAAACAAGGGCTAAACGAGAAGATTTC-----TCAAAGTTAGCCTTTACACTATCTATGA 423
* * ** * ***** * * * ** ** ** * * * *
consensus_7203#0 GCCAGAGTTCGTTACCTCTGAGGCGATCGATTGGGCAGAATACAGTTTCGGAAGGAAAT- 531
consensus_7203#1 GATGGACGATATCGATTTGAATATCAACAAATACGTATAG-ACGGCCTCGGAGTCCAATG 482
* ** * * * * * * * * * * ** * ***** ***
consensus_7203#0 -TATCAGGCAAATACACTACAGGGTTATGTAATCAAAATGATGGTAATAAAAGCATAAAT 590
consensus_7203#1 GTATCAAGCAACTATG--ACCATAATGTACAAGTAAGTCAACACCA--AGAGCTTTTGCA 538
***** **** ** ** * * ** ** * * * * *
consensus_7203#0 TTTAGTTTACTTACCCAATATTATCCCGAAATTGACAGCATTTCTTGCAGTATCAACGGC 650
consensus_7203#1 GTCAGCTCCCCTACACAACAAGCTCCATAAGTC----ACATCGCCCAAAATTACAACATC 594
* ** * * *** *** * *** ** * *** * * * **** *
consensus_7203#0 TTTTTTTCTATGTTTACGCATTTCTTTATGATCATAGTATTCACGCGTAAATGACTTATC 710
consensus_7203#1 AATATCTTTA-----ATACTGTCCTCAGCTACAGTAGAACT-GTTAGTAGA-GATAGAAA 647
* * * ** * * * ** * *** * * *** * ** *
consensus_7203#0 GTAAGGATCATAACGATAAGCAGCTAACAATGGATTAGATATCATAATGGATTCAAGATG 770
consensus_7203#1 GAGCGGGACCTGAGGTTTCGCCACAACGAATAAAGTA-ATTTCG-GATGATTTCG----G 701
* ** * * * * * ** * * *** * ** ** ** *** *** *
consensus_7203#0 AAAGCGACCATCGCCCACGTAGATTAGGGCATCAACACTTTCTACTTTAGGAGATGTACA 830
consensus_7203#1 AAATCGGT-ATTGCAAACAA---------------------------------------- 720
*** ** ** ** **
consensus_7203#0 TCCAAGTAGTTTCACCAGGCGATAAAGAGAAGGCACTGAGGAATGGTAACTAAGTAACCG 890
consensus_7203#1 ------------------------------------------------------------
consensus_7203#0 CCT 893
consensus_7203#1 ---
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||