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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1042 fasta sequence
[ATATTAAGCAATGATGAGAATTTTAAAAAAAGACTCAAAACTGAAGTCGAATACAAATGCAATGTATCATAATATATTTCTTAAGATCAATAATGATTTAAAGGACTAAATCACTGAATAAAGCCTTCTCTTCGTCTATTGTACCTGTTATAGTTTTATTCACTGGATCATAAGTTGTATTTTTCTTTAATCGACGAGATGGTTTTAATCTTGGCATGGATATTTTTGTTCGATCACCAAAGACAATTGCTTGCTCTGGTCTTGAACGATGCGATGACCATAAATGCAA-TTTTGCCGACGTCTCCATTCAGCAATAAGTAGACCAATGAAACAACAAATTAAACCAAGACTAAATGCTAGTAACAAAGCAGAAGTATGACCTTCAGATTGACTTTCCTTAACAGCGGCTATTATACTTTGTGATGAATCAGTTGTTGTGATGGGACTACTAGTACTAATGAGGGTCGCCTGTCGANTTTCACTTTTATCTATACTAGATCCCTTTTGACTAATGTCATCAAATTCATTCCTATGATGAATGTATTTGGGCTCATGAACTAACGGATACTTTTTTAAAGTATCGCTTGTTTCACTAAGTTTATTGATAAAGTCCATATTTTCCAGTACAGTTGGATCAATTATCATCTCAGATTGGTGTTTACGATCCCGATTATATTGAAAAAATGGCGGTTCATCTTGATGTGATCCATGCATAAAAGTATTGGAATGTTGATAGGGAATGAACGATAATTCATTTCTCTGTGATGACTGAGGATAATCAACTTTAAAAGCATTGAATGATCTGGGCCTGTACAGTCCTGCTGTTTCATATGGTTTCATTCGTGATAGTATCGAATGATGATGATGATGATCTGGTCGATATAGATGCTTTCTAGGTAGTGATTGTGAAAGGATATCACTACCACCCTGTGATGAAACATCATGATATAGTCCCTTAGGATAATGCCATCCAACATCATCACTTGAAGTAAAAAACATCTCAGCATTGTTATCATTATTTTCACTAATTNTATTATTTATA]
[+] EMBL CD145141 [ATATTAAGCAATGATGAGAATTTTAAAAAAAGACTCAAAACTGAAGTCGAATACAAATGCAATGTATCATAATATATTTCTTAAGATCAATAATGATTTAAAGGACTAAATCACTGAATAAAGCCTTCTCTTCGTCTATTGTACCTGTTATAGTTTTATTCACTGGATCATAAGTTGTATTTTTCTTTAATCGACGAGATGGTTTTAATCTTGGCATGGATATTTTTGTTCGATCACCAAAGACAATTGCTTGCTCTGGTCTTGAACGATGCGATGACCATAAATGCAA TTTTGCCGACGTCTCCATTCAGCAATAAGTAGACCAATGAAACAACAAATTAAACCAAGACTAAATGCTAGTAACAAAGCAGAAGTATGACCTTCAGATTGACTTTCCTTAACAGCGGCTATTATACTTTGTGATGAATCAGTTGTTGTGATGGGACTACTAGTACTAATGAGGGTCGCCTGTCGANTTTCACTTTTATCTATACTAGATCCCTTTTGACTAATGTCATCANATTCATTCCTATGATGAATGTATTTGGGCTCATGAACTAACGGATACTTTTTTAAAGTATCGCTTGTTTCACTAAGTTTATTGAT ]
[+] EMBL CD144990 [ATATTAAGCAATGATGAGAATTTTAAAAAAAGACTCAAAACTGAAGTCGAATACAAATGCAATGTATCATAATATATTTCTTAAGATCAATAATGATTTAAAGGACTAAATCACTGAATAAAGCCTTCTCTTCGTCTATTGTACCTGTTATAGTTTTATTCACTTGATCATAAGTTGTATTTTTCTTTAATCGACGAGATGGTTTTAATCTTGGCATGGATATTTTTGTTCGATCACCAAAGACAATTGCTTGCTCTGGTCTTGAACGATGCGATGACCATAAATGCAATTTTTGCCGACGTCTCCATTCAGCAATAAGTAGACCAATGAAACAACAAATTAAACCAAGACTAAATGCTAGTAACAAAGCAGAAGTATGACCTTCAGATTGACTTTCCTTAACAGCGGCTATTATACTTTGTGATGAATCAGTTGTTGTGATGGGACTACTAGTACTAATGAGGGTCGCCTGTCGATTTTCACTTTTATCTATACTAGATCCCTTTTGACTAATGTCATCAAATTCATT ]
[+] EMBL CD185493 [ CTATACTAGATCCCTTTTGACTAATGTCATCAAATTCATTCCTATGATGAATGTATTTGGGCTCATGAACTAACGGATACTTTTTTAAAGTATCGCTTGTTTCACTAAGTTTATTGATAAAGTCCATATTTTCCAGTACAGTTGGATCAATTATCATCTCAGATTGGTGTTTACGATCCCGATTATATTGAAAAAATGGCGGTTCATCTTGATGTGATCCATGCATAAAAGTATTGGAATGTTGATAGGGAATGAACGATAATTCATTTCTCTGTGATGACTGAGGATAATCAACTTTAAAAGCATTGAATGATCTGGGCCTGTACAGTCCTGCTGTTTCATATGGTTTCATTCGTGATAGTATCGAATGATGATGATGATGATCTGGTCGATATAGATGCTTTCTAGGTAGTGATTGTGAAAGGATATCACTACCACCCTGTGATGAAACATCATGATATAGTCCCTTAGGATAATGCCATCCAACATCATCACTTGAAGTAAAAAACATCTCAGCATTGTTATCATTATTTTCACTAATTNTATTATTTATA]
consensusID : consensus_7204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 934 fasta sequence
[GAATGTGTTTTACCATAATCAAAACTCATTAAAAGA-AATTCACGTTGCATCTCACAATACCTAAACACTGAATGAATCGACAAGTTAATTACTATTGATATTAATAGTAATAAAATTAGATAATAAAGAGATTAATAAATGCAAATAAACGTAAAAATATATCAAAAAAAACATTGGTGATTATCACAACATCGAAATTGTCCGATAGGAATGTATATTGCACGGAAAATGAATTAAAAAGTAATACCATCAAATTAAAACAAATGTAAGACATAGACTTGAGTGGAGTAAACAATTTATATCTATGAGGAGATTCGCGAATAAAACCAATCGGTCGTATTGTTTGTTTAAATGAGTACAGAGTTCAATAAAATATTAAGCAATGATGAGAATTTTAAAAAAAGACTCAAAACTGAAGTCGAATACAAATGCAATGTATCATAATATATTTCTTAAGATCAATAATGATTTAAAGGACTAAATCACTGAATAAAGCCTTCTCTTCGTCTATTGTACCTGTTATAGTTTTATTCACTTGATCATAAGTTGTATTTTTCTTTAATCGACGAGATGGTTTTAATCTTGGCATGGATATTTTTGTTCGATCACCAAAGACAATTGCTTGCTCTGGTCTTGAACGATGCGATGACCATAAATGCAATTTTTGCCGACGTCTCCATTCAGCAATAAGTAGACCAATGAAACAACAAATTAAACCAAGACTAAATGCTAGTAACAAAGCAGAAGTATGACCTTCAGATTGACTTTCCTTAACAGCGGCTATTATACTTTGTGATGAATCAGTTGTTGTGATGGGACTACTAGTACTAATGAGGGTCGCCTGTCGATTTTCACCTGAAGACCACAGAGAAAAGACAAATATAATCTAAGTAAAAGGAAAACATTCAAATTCATTCCTCGTGCCGAATTNCAG]
[+] EMBL CD075328 [GAATGTGTTTTACCATAATCAAAACTCATTAAAAGA AATTCACGTTGCATCTCACAATACCTAAACACTGAATGAATCGACAAGTTAATTACTATTGATATTAATAGTAATAAAATTAGATAATAAAGAGATTAATAAATGCAAATAAACGTAAAAATATATCAAAAAAAACATTGGTGATTATCACAACATCGAAATTGTCCGATAGGAATGTATATTGCACGGAAAATGAATTAAAAAGTAATACCATCAAATTAAAACAAATGTAAGACATAGACTTGAGTGGAGTAAACAATTTATATCTATGAGGAGATTCGCGAATAAAACCAATCGGTCGTATTGTTTGTTTAAATGAGTACAGAGTTCAATAAAATATTAAGCAATGATGAGAATTTTAAAAAAAGACTCAAAACTGAAGTCGAATACAAATGCAATGTATCATAATATATTTCTTAAGATCAATAATGATTTAAAGGACTAAATCACTGAATAAAGCCTTCTCTTCGTCTATTGTACCTGTTATAGTTTTATTCACTTGATCATAAGTTGTATTTTTCTTTAATCG ]
[-] EMBL CD081504 [ AATGTG TTTACCATAATCANAACTCATT AAAGANNATTCACGTTGCATCTCACAATACCTAAACACTGAATGAATCGACAAGTTAATTACTATTGATATTAATAGTAATANAATTAGATAATANAGAGATTAATAAATGCAAATAAACGTAAAAATATATCAAAAAAAACATTGGTGATTATCACAACATCGAAATTGTCCGATAGGAATGTATATTGCACGGAAAATGAATTAAAAAGTAATACCATCAAATTAAAACAAATGTAAGACATAGACTTGAGTGGAGTAAACAATTTATATCTATGAGGAGATTCGCGAATAAAACCAATCGGTCGTATTGTTTGTTTAAATGAGTACAGAGTTCAATAAAATATTAAGCAATGATGAGAATTTTAAAAAAAGACTCAAAACTGAAGTCGAATACAAATGCAATGTATCATAATATATTTCTTAAGATCAATAATGATTTAAAGGACTAAATCACTGAATAAAGCCTTCTCTTCGTCTATTGTACCTGTTATAGTTTTATTCACTTGATCATAAGTTGTATTTTTCTTTAATCGACGAGATGGTTTTAATCTTGGCATGGATATTTTTGTTCGATCACCAAAGACAATTGCTTGCTCTGGTCTTGAACGATGCGATGACCATAAATGCAATTTTTGCCGACGTCTCCATTCAGCAATAAGTAGACCAATGAAACAACAAATTAAACCAAGACTAAATGCTAGTAACAAAGCAGAAGTATGACCTTCAGATTGACTTTCCTTAACAGCGGCTATTATACTTTGTGATGAATCAGTTGTTGTGATGGGACTACTAGTACTAATGAGGGTCGCCTGTCGATTTTCACCTGAAGACCACAGAGAAAAGACAAATATAATCTAAGTAAAAGGAAAACATTCAAATTCATTCCTCGTGCCGAATTNCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7204#0 ------------------------------------------------------------
consensus_7204#1 GAATGTGTTTTACCATAATCAAAACTCATTAAAAGAAATTCACGTTGCATCTCACAATAC 60
consensus_7204#0 ------------------------------------------------------------
consensus_7204#1 CTAAACACTGAATGAATCGACAAGTTAATTACTATTGATATTAATAGTAATAAAATTAGA 120
consensus_7204#0 ------------------------------------------------------------
consensus_7204#1 TAATAAAGAGATTAATAAATGCAAATAAACGTAAAAATATATCAAAAAAAACATTGGTGA 180
consensus_7204#0 ------------------------------------------------------------
consensus_7204#1 TTATCACAACATCGAAATTGTCCGATAGGAATGTATATTGCACGGAAAATGAATTAAAAA 240
consensus_7204#0 ------------------------------------------------------------
consensus_7204#1 GTAATACCATCAAATTAAAACAAATGTAAGACATAGACTTGAGTGGAGTAAACAATTTAT 300
consensus_7204#0 ------------------------------------------------------------
consensus_7204#1 ATCTATGAGGAGATTCGCGAATAAAACCAATCGGTCGTATTGTTTGTTTAAATGAGTACA 360
consensus_7204#0 ------------ATATTAAGCAATGATGAGAATTTTAAAAAAAGACTCAAAACTGAAGTC 48
consensus_7204#1 GAGTTCAATAAAATATTAAGCAATGATGAGAATTTTAAAAAAAGACTCAAAACTGAAGTC 420
************************************************
consensus_7204#0 GAATACAAATGCAATGTATCATAATATATTTCTTAAGATCAATAATGATTTAAAGGACTA 108
consensus_7204#1 GAATACAAATGCAATGTATCATAATATATTTCTTAAGATCAATAATGATTTAAAGGACTA 480
************************************************************
consensus_7204#0 AATCACTGAATAAAGCCTTCTCTTCGTCTATTGTACCTGTTATAGTTTTATTCACTGGAT 168
consensus_7204#1 AATCACTGAATAAAGCCTTCTCTTCGTCTATTGTACCTGTTATAGTTTTATTCACTTGAT 540
******************************************************** ***
consensus_7204#0 CATAAGTTGTATTTTTCTTTAATCGACGAGATGGTTTTAATCTTGGCATGGATATTTTTG 228
consensus_7204#1 CATAAGTTGTATTTTTCTTTAATCGACGAGATGGTTTTAATCTTGGCATGGATATTTTTG 600
************************************************************
consensus_7204#0 TTCGATCACCAAAGACAATTGCTTGCTCTGGTCTTGAACGATGCGATGACCATAAATGCA 288
consensus_7204#1 TTCGATCACCAAAGACAATTGCTTGCTCTGGTCTTGAACGATGCGATGACCATAAATGCA 660
************************************************************
consensus_7204#0 ATTTT-GCCGACGTCTCCATTCAGCAATAAGTAGACCAATGAAACAACAAATTAAACCAA 347
consensus_7204#1 ATTTTTGCCGACGTCTCCATTCAGCAATAAGTAGACCAATGAAACAACAAATTAAACCAA 720
***** ******************************************************
consensus_7204#0 GACTAAATGCTAGTAACAAAGCAGAAGTATGACCTTCAGATTGACTTTCCTTAACAGCGG 407
consensus_7204#1 GACTAAATGCTAGTAACAAAGCAGAAGTATGACCTTCAGATTGACTTTCCTTAACAGCGG 780
************************************************************
consensus_7204#0 CTATTATACTTTGTGATGAATCAGTTGTTGTGATGGGACTACTAGTACTAATGAGGGTCG 467
consensus_7204#1 CTATTATACTTTGTGATGAATCAGTTGTTGTGATGGGACTACTAGTACTAATGAGGGTCG 840
************************************************************
consensus_7204#0 CCTGTCGANTTTCACTTTTAT-CTATACTAGATCCCTTTTGACTAATGTCATCAAATTCA 526
consensus_7204#1 CCTGTCGATTTTCACCTGAAGACCACAGAGAA------AAGACAAATATAATCTAA---- 890
******** ****** * * * * * * *** *** * *** **
consensus_7204#0 TTCCTATGATGAATGTATTTGGGCTCATGAACTAACGGATACTTTTTTAAAGTATCGCTT 586
consensus_7204#1 ---GTAAAAGGAAAACATTCAAATTCATTC-CTCGTGCCGAATTNCAG------------ 934
** * *** *** **** ** * * **
consensus_7204#0 GTTTCACTAAGTTTATTGATAAAGTCCATATTTTCCAGTACAGTTGGATCAATTATCATC 646
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 TCAGATTGGTGTTTACGATCCCGATTATATTGAAAAAATGGCGGTTCATCTTGATGTGAT 706
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 CCATGCATAAAAGTATTGGAATGTTGATAGGGAATGAACGATAATTCATTTCTCTGTGAT 766
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 GACTGAGGATAATCAACTTTAAAAGCATTGAATGATCTGGGCCTGTACAGTCCTGCTGTT 826
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 TCATATGGTTTCATTCGTGATAGTATCGAATGATGATGATGATGATCTGGTCGATATAGA 886
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 TGCTTTCTAGGTAGTGATTGTGAAAGGATATCACTACCACCCTGTGATGAAACATCATGA 946
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 TATAGTCCCTTAGGATAATGCCATCCAACATCATCACTTGAAGTAAAAAACATCTCAGCA 1006
consensus_7204#1 ------------------------------------------------------------
consensus_7204#0 TTGTTATCATTATTTTCACTAATTNTATTATTTATA 1042
consensus_7204#1 ------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||