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Schistosoma mansoni
cluster # 7210 cluster # 7210       Sequences # 5       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7210#0 length = 814 sequences # 2  
consensus_7210#1 length = 571 sequences # 1  
consensus_7210#2 length = 336 sequences # 1  
consensus_7210#3 length = 302 sequences # 1  

consensusID : consensus_7210#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 814
fasta sequence
                              [TGGTACGAGGCGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTTGGCGACCCATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTCTCTTTCTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGAGTTGTTATTGTGACAGCTCGTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTGTTAAATGAAAATCAACCAATCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCAAGCAAAATTCAGGATCCTATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGACAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGANCACAGAGAGACATCGAAACCGTCATTNTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACCAAGTTCATCANAAGTCTTAACTGCGTACGTAAATGTTNTAATTCTGTTTTGACCATTNCAAC-TGTATATGTCAGTAGTGGTGAATT-AGTAAATCATCGT--GTATTA-TAGT-CCCTATATATAGTT]

[+] EMBL CD082145             [TGGTACGAGGCGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTTGGCGACCCATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTCTCTTTCTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGAGTTGTTATTGTGACAGCTCGTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTGTTAAATGAAAATCAACCAATCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCAAGCAAAATTCAGGATCCTATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGACAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGANCACAGAGAGACATCGAAACCGTCATTNTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACCAAGTTCATCANAAGTCTTAACTGCGTACGTAAATGTTNTAATTCTGTTTTGACCATTNCAAC TGTATATGTCAGTAGTGGTGAATT AGTAAATCATCGT  GTATTA TAGT CCCTATAT      ]
[-] EMBL CD075764             [                                                                                                                                                                                                                                                                      GGTTATGGTAACAGGTGATCATATGCTTACCTCTCTTTCTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGAGTTGTTATTGTGACAGCTCGTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTGTTAAATGAAAATCAACCAATCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCAAGCAAAATTCAGGATCCTATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGACAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGACAACAGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCGTACGTAAATGTTTTAATTCTGTTTTGACCATTCAAACTTGTATATGTCAGTAGTGTTGAATTAAGTAAATCATCGTTGGTATTATTAGTCCCCTAAATATAGTT]


>consensus_7210#0 TGGTACGAGGCGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATT TGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTTGGCGACCCATCAAGG CATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTC TGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTC TACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTCTCTTT CTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGAGTTGTTATTGTGACAGCTC GTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTGTTAAATGAAAATCAACCAA TCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCAAGCAAAATTCAGGATCCTA TCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTC ATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGACAACTAACATTCAACTGA AGCGAAATCTAACCAAGACTGANCACAGAGAGACATCGAAACCGTCATTNTTCAAGCGAA TGGAAACAAGATTTGGTTTTGGTCGATTACCAAGTTCATCANAAGTCTTAACTGCGTACG TAAATGTTNTAATTCTGTTTTGACCATTNCAACTGTATATGTCAGTAGTGGTGAATTAGT AAATCATCGTGTATTATAGTCCCTATATATAGTT



consensusID : consensus_7210#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence
                              [GTCACCCTGGCCAAGGGTGGNAAATCAGGGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACCGATTATGAAAAATGTTTGTTTGATAAATTAGACAAACACTTAGATAAGTCAGATACTTTTAAGTACAAGGATTCTATTGAAAACCGTTATTCACTCTCCATTCGAATGATCGATAGACCTGATTTCCATCTGGCAATTTCAGGGAAAACATGGTCTGTTATTCAGGAGCACTATCCTTGGCTAATACCTAAATTGGTTGTGAAAGGTACAGTGTTTGCTCGCTTCTCTCCAGAACAAAAAGCACAAGTGATTGAAGCTCTCCAGTCAGTTGGTTACTTTGTTTCTATGTGTGGAGATGGTGCTAATGATTGTGGAGCTTTAAAAGTAGCTCATGCTGGATTTCCTTAAGTGAAGCAGAAGCAAGTATTGCTAGTCCTTTTACATCAAAGA]

[+] EMBL CD167858             [GTCACCCTGGCCAAGGGTGGNAAATCAGGGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACCGATTATGAAAAATGTTTGTTTGATAAATTAGACAAACACTTAGATAAGTCAGATACTTTTAAGTACAAGGATTCTATTGAAAACCGTTATTCACTCTCCATTCGAATGATCGATAGACCTGATTTCCATCTGGCAATTTCAGGGAAAACATGGTCTGTTATTCAGGAGCACTATCCTTGGCTAATACCTAAATTGGTTGTGAAAGGTACAGTGTTTGCTCGCTTCTCTCCAGAACAAAAAGCACAAGTGATTGAAGCTCTCCAGTCAGTTGGTTACTTTGTTTCTATGTGTGGAGATGGTGCTAATGATTGTGGAGCTTTAAAAGTAGCTCATGCTGGATTTCCTTAAGTGAAGCAGAAGCAAGTATTGCTAGTCCTTTTACATCAAAGA]


>consensus_7210#1 GTCACCCTGGCCAAGGGTGGNAAATCAGGGAGAGACATCGAAACCGTCATTTTTCAAGCG AATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTT ACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATAC CGATTATGAAAAATGTTTGTTTGATAAATTAGACAAACACTTAGATAAGTCAGATACTTT TAAGTACAAGGATTCTATTGAAAACCGTTATTCACTCTCCATTCGAATGATCGATAGACC TGATTTCCATCTGGCAATTTCAGGGAAAACATGGTCTGTTATTCAGGAGCACTATCCTTG GCTAATACCTAAATTGGTTGTGAAAGGTACAGTGTTTGCTCGCTTCTCTCCAGAACAAAA AGCACAAGTGATTGAAGCTCTCCAGTCAGTTGGTTACTTTGTTTCTATGTGTGGAGATGG TGCTAATGATTGTGGAGCTTTAAAAGTAGCTCATGCTGGATTTCCTTAAGTGAAGCAGAA GCAAGTATTGCTAGTCCTTTTACATCAAAGA



consensusID : consensus_7210#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence
                              [ATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGGCAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGACAACAGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACCGATTATGAAAAATGTTTGTTTGATAAATTAGACAAA]

[+] EMBL CD130929             [ATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGGCAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGACAACAGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACCGATTATGAAAAATGTTTGTTTGATAAATTAGACAAA]


>consensus_7210#2 ATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTT CATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGGCAACTAACATTCAACTG AAGCGAAATCTAACCAAGACTGACAACAGAGAGACATCGAAACCGTCATTTTTCAAGCGA ATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTA CCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACC GATTATGAAAAATGTTTGTTTGATAAATTAGACAAA



consensusID : consensus_7210#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence
                              [GGCGCTCCAGAGACAATTGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTCGGCGACCCATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTC]

[+] EMBL CD116468             [GGCGCTCCAGAGACAATTGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTCGGCGACCCATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTC]


>consensus_7210#3 GGCGCTCCAGAGACAATTGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCAC TCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTCGGCGACCC ATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTT TTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATT AAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACC TC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7210#0      ------------------------------------------------------------
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      ------------------------------------------------------------
consensus_7210#2      ATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTT 60
                                                                                  

consensus_7210#0      ------------------------------------------------------------
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      ------------------------------------------------------------
consensus_7210#2      CATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGGCAACTAACATTCAACTG 120
                                                                                  

consensus_7210#0      ----------TGGTACGAGGCGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTC 50
consensus_7210#3      ---GGCGCTCCAGAGACAATTGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTC 57
consensus_7210#1      ---GTCACCCTGGCCAAGGGTGGNAAATCAGGGAGA---GACATCGAAACCGTCATTTTT 54
consensus_7210#2      AAGCGAAATCTAACCAAGACTGACA----ACAGAGA---GACATCGAAACCGTCATTTTT 173
                                           *            **   ** *    * *    * *** 

consensus_7210#0      CACTCGAATTTG--TTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTTGGC 108
consensus_7210#3      CACTCGAATTTG--TTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTCGGC 115
consensus_7210#1      CAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAAC 114
consensus_7210#2      CAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAAC 233
                      **  *****        ** **   *   *  * **     ****    *  * **   *

consensus_7210#0      GACCC-ATCAAGGCATCATATTTACGTATTATGC-GCATATCGCGTGACCGAGTTGAACA 166
consensus_7210#3      GACCC-ATCAAGGCATCATATTTACGTATTATGC-GCATATCGCGTGACCGAGTTGAACA 173
consensus_7210#1      TGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAA 174
consensus_7210#2      TGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAA 293
                        *   * * * **     * *   * * *** *  *        ***   *** **  *

consensus_7210#0      TAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCC 226
consensus_7210#3      TAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCC 233
consensus_7210#1      TCATACCG-ATTATGAAAAATGTTTGTT-TGATAAATTAGACAAACACTTAGATAAGTCA 232
consensus_7210#2      TCATACCG-ATTATGAAAAATGTTTGTT-TGATAAATTAGACAAA--------------- 336
                      * **      **      * *  * **  **   ***      **               

consensus_7210#0      GGTTATTAAAACTCTACG----CCAAGCGAATATACGACCGGTTATGGTAACAGGTGATC 282
consensus_7210#3      GGTTATTAAAACTCTACG----CCAAGCGAATATACGACCGGTTATGGTAACAGGTGATC 289
consensus_7210#1      GATACTTTTAAGTACAAGGATTCTATTGAAAACCGTTATTCACTCTCCATTCGAATGATC 292
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      -ATATGCTTACCTCTCTTTCTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGA 341
consensus_7210#3      -ATATGCTTACCTC---------------------------------------------- 302
consensus_7210#1      GATAGACCTGATTTCCATCTGGCAATTTCAGGGAAAACATGGTCTGTTATTCAGGAGCAC 352
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      GTTGTTATTGTGACAGCTCGTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTG 401
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      TATCCTTGGCTAATACCTAAATTGGTTGTGAAAGGTACAGTGTTTGCTCGCTTCTCTCCA 412
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      TTAAATGAAAATCAACCAATCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCA 461
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      GAACAAAAAGCACAAGTGATTGAAGCTCTCCAGTCAGTTGGTTACTTTGTTTCTATGTGT 472
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      AGCAAAATTCAGGATCCTATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATC 521
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      GGAGATGGTGCTAATGATTGTGGAGCTTTAAAAGTAGCTCATGCTGGATTTCCTTAAGTG 532
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      AATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCG 581
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      AAGCAGAAGCAAGTATTGCTAGTCCTTTTACATCAAAGA--------------------- 571
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      ACAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGANCACAGAGAGACATCGAAA 641
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      ------------------------------------------------------------
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      CCGTCATTNTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACCAAGTTCATCA 701
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      ------------------------------------------------------------
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      NAAGTCTTAACTGCGTACGTAAATGTTNTAATTCTGTTTTGACCATTNCAACTGTATATG 761
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      ------------------------------------------------------------
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      TCAGTAGTGGTGAATTAGTAAATCATCGTGTATTATAGTCCCTATATATAGTT 814
consensus_7210#3      -----------------------------------------------------
consensus_7210#1      -----------------------------------------------------
consensus_7210#2      -----------------------------------------------------
                                                                           




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)