cluster # 7210

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7210 cluster # 7210 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7210#0 length = 814 sequences # 2
consensus_7210#1 length = 571 sequences # 1

consensus_7210#2 length = 336 sequences # 1
consensus_7210#3 length = 302 sequences # 1

consensusID : consensus_7210#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 814
fasta sequence

                              [TGGTACGAGGCGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTTGGCGACCCATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTCTCTTTCTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGAGTTGTTATTGTGACAGCTCGTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTGTTAAATGAAAATCAACCAATCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCAAGCAAAATTCAGGATCCTATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGACAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGANCACAGAGAGACATCGAAACCGTCATTNTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACCAAGTTCATCANAAGTCTTAACTGCGTACGTAAATGTTNTAATTCTGTTTTGACCATTNCAAC-TGTATATGTCAGTAGTGGTGAATT-AGTAAATCATCGT--GTATTA-TAGT-CCCTATATATAGTT]

[+] EMBL CD082145             [TGGTACGAGGCGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTTGGCGACCCATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTCTCTTTCTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGAGTTGTTATTGTGACAGCTCGTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTGTTAAATGAAAATCAACCAATCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCAAGCAAAATTCAGGATCCTATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGACAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGANCACAGAGAGACATCGAAACCGTCATTNTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACCAAGTTCATCANAAGTCTTAACTGCGTACGTAAATGTTNTAATTCTGTTTTGACCATTNCAAC TGTATATGTCAGTAGTGGTGAATT AGTAAATCATCGT  GTATTA TAGT CCCTATAT      ]
[-] EMBL CD075764             [                                                                                                                                                                                                                                                                      GGTTATGGTAACAGGTGATCATATGCTTACCTCTCTTTCTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGAGTTGTTATTGTGACAGCTCGTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTGTTAAATGAAAATCAACCAATCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCAAGCAAAATTCAGGATCCTATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGACAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGACAACAGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCGTACGTAAATGTTTTAATTCTGTTTTGACCATTCAAACTTGTATATGTCAGTAGTGTTGAATTAAGTAAATCATCGTTGGTATTATTAGTCCCCTAAATATAGTT]




>consensus_7210#0
TGGTACGAGGCGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATT
TGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTTGGCGACCCATCAAGG
CATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTC
TGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTC
TACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTCTCTTT
CTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGAGTTGTTATTGTGACAGCTC
GTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTGTTAAATGAAAATCAACCAA
TCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCAAGCAAAATTCAGGATCCTA
TCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTC
ATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGACAACTAACATTCAACTGA
AGCGAAATCTAACCAAGACTGANCACAGAGAGACATCGAAACCGTCATTNTTCAAGCGAA
TGGAAACAAGATTTGGTTTTGGTCGATTACCAAGTTCATCANAAGTCTTAACTGCGTACG
TAAATGTTNTAATTCTGTTTTGACCATTNCAACTGTATATGTCAGTAGTGGTGAATTAGT
AAATCATCGTGTATTATAGTCCCTATATATAGTT

consensusID : consensus_7210#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [GTCACCCTGGCCAAGGGTGGNAAATCAGGGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACCGATTATGAAAAATGTTTGTTTGATAAATTAGACAAACACTTAGATAAGTCAGATACTTTTAAGTACAAGGATTCTATTGAAAACCGTTATTCACTCTCCATTCGAATGATCGATAGACCTGATTTCCATCTGGCAATTTCAGGGAAAACATGGTCTGTTATTCAGGAGCACTATCCTTGGCTAATACCTAAATTGGTTGTGAAAGGTACAGTGTTTGCTCGCTTCTCTCCAGAACAAAAAGCACAAGTGATTGAAGCTCTCCAGTCAGTTGGTTACTTTGTTTCTATGTGTGGAGATGGTGCTAATGATTGTGGAGCTTTAAAAGTAGCTCATGCTGGATTTCCTTAAGTGAAGCAGAAGCAAGTATTGCTAGTCCTTTTACATCAAAGA]

[+] EMBL CD167858             [GTCACCCTGGCCAAGGGTGGNAAATCAGGGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACCGATTATGAAAAATGTTTGTTTGATAAATTAGACAAACACTTAGATAAGTCAGATACTTTTAAGTACAAGGATTCTATTGAAAACCGTTATTCACTCTCCATTCGAATGATCGATAGACCTGATTTCCATCTGGCAATTTCAGGGAAAACATGGTCTGTTATTCAGGAGCACTATCCTTGGCTAATACCTAAATTGGTTGTGAAAGGTACAGTGTTTGCTCGCTTCTCTCCAGAACAAAAAGCACAAGTGATTGAAGCTCTCCAGTCAGTTGGTTACTTTGTTTCTATGTGTGGAGATGGTGCTAATGATTGTGGAGCTTTAAAAGTAGCTCATGCTGGATTTCCTTAAGTGAAGCAGAAGCAAGTATTGCTAGTCCTTTTACATCAAAGA]




>consensus_7210#1
GTCACCCTGGCCAAGGGTGGNAAATCAGGGAGAGACATCGAAACCGTCATTTTTCAAGCG
AATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTT
ACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATAC
CGATTATGAAAAATGTTTGTTTGATAAATTAGACAAACACTTAGATAAGTCAGATACTTT
TAAGTACAAGGATTCTATTGAAAACCGTTATTCACTCTCCATTCGAATGATCGATAGACC
TGATTTCCATCTGGCAATTTCAGGGAAAACATGGTCTGTTATTCAGGAGCACTATCCTTG
GCTAATACCTAAATTGGTTGTGAAAGGTACAGTGTTTGCTCGCTTCTCTCCAGAACAAAA
AGCACAAGTGATTGAAGCTCTCCAGTCAGTTGGTTACTTTGTTTCTATGTGTGGAGATGG
TGCTAATGATTGTGGAGCTTTAAAAGTAGCTCATGCTGGATTTCCTTAAGTGAAGCAGAA
GCAAGTATTGCTAGTCCTTTTACATCAAAGA

consensusID : consensus_7210#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 336
fasta sequence

                              [ATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGGCAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGACAACAGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACCGATTATGAAAAATGTTTGTTTGATAAATTAGACAAA]

[+] EMBL CD130929             [ATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGGCAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGACAACAGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACCGATTATGAAAAATGTTTGTTTGATAAATTAGACAAA]




>consensus_7210#2
ATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTT
CATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGGCAACTAACATTCAACTG
AAGCGAAATCTAACCAAGACTGACAACAGAGAGACATCGAAACCGTCATTTTTCAAGCGA
ATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTA
CCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACC
GATTATGAAAAATGTTTGTTTGATAAATTAGACAAA

consensusID : consensus_7210#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence

                              [GGCGCTCCAGAGACAATTGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTCGGCGACCCATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTC]

[+] EMBL CD116468             [GGCGCTCCAGAGACAATTGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTCGGCGACCCATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTC]




>consensus_7210#3
GGCGCTCCAGAGACAATTGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCAC
TCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTCGGCGACCC
ATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTT
TTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATT
AAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACC
TC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7210#0      ------------------------------------------------------------
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      ------------------------------------------------------------
consensus_7210#2      ATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTT 60
                                                                                  

consensus_7210#0      ------------------------------------------------------------
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      ------------------------------------------------------------
consensus_7210#2      CATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGGCAACTAACATTCAACTG 120
                                                                                  

consensus_7210#0      ----------TGGTACGAGGCGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTC 50
consensus_7210#3      ---GGCGCTCCAGAGACAATTGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTC 57
consensus_7210#1      ---GTCACCCTGGCCAAGGGTGGNAAATCAGGGAGA---GACATCGAAACCGTCATTTTT 54
consensus_7210#2      AAGCGAAATCTAACCAAGACTGACA----ACAGAGA---GACATCGAAACCGTCATTTTT 173
                                           *            **   ** *    * *    * *** 

consensus_7210#0      CACTCGAATTTG--TTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTTGGC 108
consensus_7210#3      CACTCGAATTTG--TTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTCGGC 115
consensus_7210#1      CAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAAC 114
consensus_7210#2      CAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAAC 233
                      **  *****        ** **   *   *  * **     ****    *  * **   *

consensus_7210#0      GACCC-ATCAAGGCATCATATTTACGTATTATGC-GCATATCGCGTGACCGAGTTGAACA 166
consensus_7210#3      GACCC-ATCAAGGCATCATATTTACGTATTATGC-GCATATCGCGTGACCGAGTTGAACA 173
consensus_7210#1      TGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAA 174
consensus_7210#2      TGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAA 293
                        *   * * * **     * *   * * *** *  *        ***   *** **  *

consensus_7210#0      TAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCC 226
consensus_7210#3      TAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCC 233
consensus_7210#1      TCATACCG-ATTATGAAAAATGTTTGTT-TGATAAATTAGACAAACACTTAGATAAGTCA 232
consensus_7210#2      TCATACCG-ATTATGAAAAATGTTTGTT-TGATAAATTAGACAAA--------------- 336
                      * **      **      * *  * **  **   ***      **               

consensus_7210#0      GGTTATTAAAACTCTACG----CCAAGCGAATATACGACCGGTTATGGTAACAGGTGATC 282
consensus_7210#3      GGTTATTAAAACTCTACG----CCAAGCGAATATACGACCGGTTATGGTAACAGGTGATC 289
consensus_7210#1      GATACTTTTAAGTACAAGGATTCTATTGAAAACCGTTATTCACTCTCCATTCGAATGATC 292
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      -ATATGCTTACCTCTCTTTCTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGA 341
consensus_7210#3      -ATATGCTTACCTC---------------------------------------------- 302
consensus_7210#1      GATAGACCTGATTTCCATCTGGCAATTTCAGGGAAAACATGGTCTGTTATTCAGGAGCAC 352
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      GTTGTTATTGTGACAGCTCGTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTG 401
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      TATCCTTGGCTAATACCTAAATTGGTTGTGAAAGGTACAGTGTTTGCTCGCTTCTCTCCA 412
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      TTAAATGAAAATCAACCAATCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCA 461
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      GAACAAAAAGCACAAGTGATTGAAGCTCTCCAGTCAGTTGGTTACTTTGTTTCTATGTGT 472
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      AGCAAAATTCAGGATCCTATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATC 521
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      GGAGATGGTGCTAATGATTGTGGAGCTTTAAAAGTAGCTCATGCTGGATTTCCTTAAGTG 532
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      AATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCG 581
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      AAGCAGAAGCAAGTATTGCTAGTCCTTTTACATCAAAGA--------------------- 571
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      ACAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGANCACAGAGAGACATCGAAA 641
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      ------------------------------------------------------------
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      CCGTCATTNTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACCAAGTTCATCA 701
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      ------------------------------------------------------------
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      NAAGTCTTAACTGCGTACGTAAATGTTNTAATTCTGTTTTGACCATTNCAACTGTATATG 761
consensus_7210#3      ------------------------------------------------------------
consensus_7210#1      ------------------------------------------------------------
consensus_7210#2      ------------------------------------------------------------
                                                                                  

consensus_7210#0      TCAGTAGTGGTGAATTAGTAAATCATCGTGTATTATAGTCCCTATATATAGTT 814
consensus_7210#3      -----------------------------------------------------
consensus_7210#1      -----------------------------------------------------
consensus_7210#2      -----------------------------------------------------