These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7210#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 814 fasta sequence [TGGTACGAGGCGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTTGGCGACCCATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTCTCTTTCTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGAGTTGTTATTGTGACAGCTCGTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTGTTAAATGAAAATCAACCAATCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCAAGCAAAATTCAGGATCCTATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGACAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGANCACAGAGAGACATCGAAACCGTCATTNTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACCAAGTTCATCANAAGTCTTAACTGCGTACGTAAATGTTNTAATTCTGTTTTGACCATTNCAAC-TGTATATGTCAGTAGTGGTGAATT-AGTAAATCATCGT--GTATTA-TAGT-CCCTATATATAGTT] [+] EMBL CD082145 [TGGTACGAGGCGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTTGGCGACCCATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTCTCTTTCTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGAGTTGTTATTGTGACAGCTCGTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTGTTAAATGAAAATCAACCAATCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCAAGCAAAATTCAGGATCCTATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGACAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGANCACAGAGAGACATCGAAACCGTCATTNTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACCAAGTTCATCANAAGTCTTAACTGCGTACGTAAATGTTNTAATTCTGTTTTGACCATTNCAAC TGTATATGTCAGTAGTGGTGAATT AGTAAATCATCGT GTATTA TAGT CCCTATAT ] [-] EMBL CD075764 [ GGTTATGGTAACAGGTGATCATATGCTTACCTCTCTTTCTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGAGTTGTTATTGTGACAGCTCGTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTGTTAAATGAAAATCAACCAATCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCAAGCAAAATTCAGGATCCTATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGACAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGACAACAGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCGTACGTAAATGTTTTAATTCTGTTTTGACCATTCAAACTTGTATATGTCAGTAGTGTTGAATTAAGTAAATCATCGTTGGTATTATTAGTCCCCTAAATATAGTT] consensusID : consensus_7210#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [GTCACCCTGGCCAAGGGTGGNAAATCAGGGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACCGATTATGAAAAATGTTTGTTTGATAAATTAGACAAACACTTAGATAAGTCAGATACTTTTAAGTACAAGGATTCTATTGAAAACCGTTATTCACTCTCCATTCGAATGATCGATAGACCTGATTTCCATCTGGCAATTTCAGGGAAAACATGGTCTGTTATTCAGGAGCACTATCCTTGGCTAATACCTAAATTGGTTGTGAAAGGTACAGTGTTTGCTCGCTTCTCTCCAGAACAAAAAGCACAAGTGATTGAAGCTCTCCAGTCAGTTGGTTACTTTGTTTCTATGTGTGGAGATGGTGCTAATGATTGTGGAGCTTTAAAAGTAGCTCATGCTGGATTTCCTTAAGTGAAGCAGAAGCAAGTATTGCTAGTCCTTTTACATCAAAGA] [+] EMBL CD167858 [GTCACCCTGGCCAAGGGTGGNAAATCAGGGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACCGATTATGAAAAATGTTTGTTTGATAAATTAGACAAACACTTAGATAAGTCAGATACTTTTAAGTACAAGGATTCTATTGAAAACCGTTATTCACTCTCCATTCGAATGATCGATAGACCTGATTTCCATCTGGCAATTTCAGGGAAAACATGGTCTGTTATTCAGGAGCACTATCCTTGGCTAATACCTAAATTGGTTGTGAAAGGTACAGTGTTTGCTCGCTTCTCTCCAGAACAAAAAGCACAAGTGATTGAAGCTCTCCAGTCAGTTGGTTACTTTGTTTCTATGTGTGGAGATGGTGCTAATGATTGTGGAGCTTTAAAAGTAGCTCATGCTGGATTTCCTTAAGTGAAGCAGAAGCAAGTATTGCTAGTCCTTTTACATCAAAGA] consensusID : consensus_7210#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [ATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGGCAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGACAACAGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACCGATTATGAAAAATGTTTGTTTGATAAATTAGACAAA] [+] EMBL CD130929 [ATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGGCAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGACAACAGAGAGACATCGAAACCGTCATTTTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAACTGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAATCATACCGATTATGAAAAATGTTTGTTTGATAAATTAGACAAA] consensusID : consensus_7210#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [GGCGCTCCAGAGACAATTGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTCGGCGACCCATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTC] [+] EMBL CD116468 [GGCGCTCCAGAGACAATTGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTCCACTCGAATTTGTTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTCGGCGACCCATCAAGGCATCATATTTACGTATTATGCGCATATCGCGTGACCGAGTTGAACATAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCCGGTTATTAAAACTCTACGCCAAGCGAATATACGACCGGTTATGGTAACAGGTGATCATATGCTTACCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7210#0 ------------------------------------------------------------ consensus_7210#3 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#2 ATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATCAATTCCCTTGTTCAGTTT 60 consensus_7210#0 ------------------------------------------------------------ consensus_7210#3 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#2 CATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCGGCAACTAACATTCAACTG 120 consensus_7210#0 ----------TGGTACGAGGCGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTC 50 consensus_7210#3 ---GGCGCTCCAGAGACAATTGAAGTTTTGTGTCGACGTGATACAATACCTACTAATTTC 57 consensus_7210#1 ---GTCACCCTGGCCAAGGGTGGNAAATCAGGGAGA---GACATCGAAACCGTCATTTTT 54 consensus_7210#2 AAGCGAAATCTAACCAAGACTGACA----ACAGAGA---GACATCGAAACCGTCATTTTT 173 * ** ** * * * * *** consensus_7210#0 CACTCGAATTTG--TTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTTGGC 108 consensus_7210#3 CACTCGAATTTG--TTGGAATTCACTCGAGAAGGTTTTCGCGTTCTGGCATTGGCTCGGC 115 consensus_7210#1 CAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAAC 114 consensus_7210#2 CAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACAAAGTTCATCAAAAGTCTTAAC 233 ** ***** ** ** * * * ** **** * * ** * consensus_7210#0 GACCC-ATCAAGGCATCATATTTACGTATTATGC-GCATATCGCGTGACCGAGTTGAACA 166 consensus_7210#3 GACCC-ATCAAGGCATCATATTTACGTATTATGC-GCATATCGCGTGACCGAGTTGAACA 173 consensus_7210#1 TGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAA 174 consensus_7210#2 TGCTTTACCTACGCTAGTCAATAGTGCAATATACCACGCGGATTCTGAAAAAGTAGACAA 293 * * * * ** * * * * *** * * *** *** ** * consensus_7210#0 TAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCC 226 consensus_7210#3 TAATCTTTTGTTTCTGGGACTACTGGTGATGGAGAATCGACTGAAACCTGAGTCTGGTCC 233 consensus_7210#1 TCATACCG-ATTATGAAAAATGTTTGTT-TGATAAATTAGACAAACACTTAGATAAGTCA 232 consensus_7210#2 TCATACCG-ATTATGAAAAATGTTTGTT-TGATAAATTAGACAAA--------------- 336 * ** ** * * * ** ** *** ** consensus_7210#0 GGTTATTAAAACTCTACG----CCAAGCGAATATACGACCGGTTATGGTAACAGGTGATC 282 consensus_7210#3 GGTTATTAAAACTCTACG----CCAAGCGAATATACGACCGGTTATGGTAACAGGTGATC 289 consensus_7210#1 GATACTTTTAAGTACAAGGATTCTATTGAAAACCGTTATTCACTCTCCATTCGAATGATC 292 consensus_7210#2 ------------------------------------------------------------ consensus_7210#0 -ATATGCTTACCTCTCTTTCTGTGGCACGAGACTGCGAAATGATTGATGAACTAGATCGA 341 consensus_7210#3 -ATATGCTTACCTC---------------------------------------------- 302 consensus_7210#1 GATAGACCTGATTTCCATCTGGCAATTTCAGGGAAAACATGGTCTGTTATTCAGGAGCAC 352 consensus_7210#2 ------------------------------------------------------------ consensus_7210#0 GTTGTTATTGTGACAGCTCGTCCGCCACCTTGTCCTGGTAATGATTTTGCCTCAGAGGTG 401 consensus_7210#3 ------------------------------------------------------------ consensus_7210#1 TATCCTTGGCTAATACCTAAATTGGTTGTGAAAGGTACAGTGTTTGCTCGCTTCTCTCCA 412 consensus_7210#2 ------------------------------------------------------------ consensus_7210#0 TTAAATGAAAATCAACCAATCCCTGTACCAAATACTGGATTTTCTACTGAAACAAATCCA 461 consensus_7210#3 ------------------------------------------------------------ consensus_7210#1 GAACAAAAAGCACAAGTGATTGAAGCTCTCCAGTCAGTTGGTTACTTTGTTTCTATGTGT 472 consensus_7210#2 ------------------------------------------------------------ consensus_7210#0 AGCAAAATTCAGGATCCTATCAATGCAGGAGATAATAAAAATTTCTCAGATGATCTAATC 521 consensus_7210#3 ------------------------------------------------------------ consensus_7210#1 GGAGATGGTGCTAATGATTGTGGAGCTTTAAAAGTAGCTCATGCTGGATTTCCTTAAGTG 532 consensus_7210#2 ------------------------------------------------------------ consensus_7210#0 AATTCCCTTGTTCAGTTTCATTATGCAGAAGACCTACACAGACCGGTTACTGAAGTCGCG 581 consensus_7210#3 ------------------------------------------------------------ consensus_7210#1 AAGCAGAAGCAAGTATTGCTAGTCCTTTTACATCAAAGA--------------------- 571 consensus_7210#2 ------------------------------------------------------------ consensus_7210#0 ACAACTAACATTCAACTGAAGCGAAATCTAACCAAGACTGANCACAGAGAGACATCGAAA 641 consensus_7210#3 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#2 ------------------------------------------------------------ consensus_7210#0 CCGTCATTNTTCAAGCGAATGGAAACAAGATTTGGTTTTGGTCGATTACCAAGTTCATCA 701 consensus_7210#3 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#2 ------------------------------------------------------------ consensus_7210#0 NAAGTCTTAACTGCGTACGTAAATGTTNTAATTCTGTTTTGACCATTNCAACTGTATATG 761 consensus_7210#3 ------------------------------------------------------------ consensus_7210#1 ------------------------------------------------------------ consensus_7210#2 ------------------------------------------------------------ consensus_7210#0 TCAGTAGTGGTGAATTAGTAAATCATCGTGTATTATAGTCCCTATATATAGTT 814 consensus_7210#3 ----------------------------------------------------- consensus_7210#1 ----------------------------------------------------- consensus_7210#2 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||