These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1041 fasta sequence [CTTTTTTTTATTAAGACAAACTTTCTGTCCAATGGATGATGCTACTTTAATAAGATTGATGGATCAAGAAGTCTCTGACAAAGAATCAGGAGATGGTTCAATAACTGAAGATACAGAACAAATGGAGGATATTCCAAATAATATGTTGAATAGTTTACGTTTTCTTGCTAAATGGATGAGTGAAAATCAATCATTTGTAAACAAACCACAAAGTATATCACGAGGATGTTTGGCAAAATATTGTGAATGTCGTCGTGAACTTATCCGTCTAAATTTAGTAAGAGTACGAGAATTATTAAGAAAAGCTGAAAATCCATCATCATCATCTGGCACAGTATCTAAACCAGGATTTCTGCCGCCAAACGTACGTGGTCGCACTAAACGCCTCCCTGGATTCGTTTGGGATATAAGTGCTGTTCGACTTATCAATGAAACAGAAACCGATGAACTTGATTCTGAACATTATGCTATCGCTCTGGGTGTTCTCGTTAAATTAATGCAAAATGAATGTATTTTGTTGGATCGTTTACAGTTAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCATCTGATATCTTAACTGAAGGAACAACACTAACTCGTCTAATGCATCGAGCTCAAGGGCGGGCAGAATTTCATATGGTTATGTCATTATTAGTAGTACTGAAAAAGTTTTTTCAAATTTCTGATGATCTTGTATCTGTACTTCA-GGGTATTGATAATGTAATAATTGATTTTAATCAATTAGTTCTTCGTTTATTAAGTCAAAGTAAAATAACACTAGAAACTTATGTACAATTTTTGCAACAAGTTACAGAAAAATCCAGTTCAAATAGTAATGTTGTACCTGAAGATGGAACAATACATGAACTTACAACTAATGCATTGATGTATTTAGAAAACTTGTTAGAATTCGCTGATATTATTGGTACTACTTTGTCATTTACTGAAGCTGNGCCACAAGCTACTACTAACACACTTANATATCTTACCACTATTGGCCANAATCATGCCTT] [+] EMBL CD187022 [CTTTTTTTTATTAAGACAAACTTTCTGTCCAATGGATGATGCTACTTTAATAAGATTGATGGATCAAGAAGTCTCTGACAAAGAATCAGGAGATGGTTCAATAACTGAAGATACAGAACAAATGGAGGATATTCCAAATAATATGTTGAATAGTTTACGTTTTCTTGCTAAATGGATGAGTGAAAATCAATCATTTGTAAACAAACCACAAAGTATATCACGAGGATGTTTGGCAAAATATTGTGAATGTCGTCGTGAACTTATCCGTCTAAATTTAGTAAGAGTACGAGAATTATTAAGAAAAGCTGAAAATCCATCATCATCATCTGGCACAGTATCTAAACCAGGATTTCTGCCGCCAAACGTACGTGGTCGCACTAAACGCCTCCCTGGATTCGTTTGGGATATAAGTGCTGTTCGACTTATCAATGAAACAGAAACCGATGAACTTGATTCTGAACATTATGCTATCGCTCTGGGTGTTCTCGTTAAA ] [+] EMBL CD191625 [ AAAATCAATCATTTGTAAACAAACCACAAAGTATATCACAAGGATGTTTGGCAAAATATTGTGAATGTCGTCGTGAACTTATCCGTCTAAATTTAGTAAGAGTACGAGAATTATTAAGAAAAGCTGAAAATCCATCATCATCATCTGGCACAGTATCTAAACCAGGATTTCTGCCGCCAAACGTACGTGGTCGCACTAAACGCCTCCCTGGATTCGTTTGGGATATAAGTGCTGTTCGACTTATCAATGAAACAGAAACCGATGAACTTGATTCTGAACATTATGCTATCGCTCTGGGTGTTCTCGTTAAATTAATGCAAAATGAATGTATTTTGTTGGATCGTTTACAGTTAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCATCTGATATCTTAACTGAAGGAACAACACTAACTCGTCTAATGCATCGAGCTCAAGGGCGGGCAGAATTTCATATGGTTATGTCATTATTAGTAGTACTGAAAAAGTTTTTTCAAATTTCTGATGATCTTGTATCTGTACTTCAGGGGTATTGAT ATGTAATAATTGATTTTA ] [+] EMBL CD140075 [ ATGTAAGTGCTGTTCGACTTATCAATGAAACAGAAACCGATGAACTTGATTCTGAACATTATGCTATCGCTCTGGGTGTTCTCGTTAAATTAATGCAAAATGAATGTATTTTGTTGGATCGTTTACAGTTAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCATCTGATATCTTAACTGAAGGAACAACACTAACTCGTCTAATGCATCGAGCTCAAGGGCGGGCAGAATTTCATATGGTTATGTCATTATTAGTAGTACTGAAAAAGTTTTTTCAAATTTCTGATGATCTTGTATCTGTACTTCA GGGCATTGATAATGTAATAATTGATTTTAATCAATTAGTTCTTCGTTTATTAAGTCAAAGTAAAATAACACTAGAAACTTATGTACAATTT ] [+] EMBL CD154083 [ GCTATCGCTCTGGGTGTTCTCGTTAAATTAATGCAAAATGAATGTATTTTGTTGGATCGTTTACAGTTAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCATCTGATATCTTAACTGAAGGAACAACACTAACTCGTCTAATGCATCGAGCTCAAGGGCGGGCAGAATTTCATATGGTTATGTCATTATTAGTAGTACTGAAAAAGTTTTTTCAAATTTCTGATGATCTTGTATCTGTACTTCA GGGTATTGATAATGTAATAATTGATTTTAATCAATTAGTTCTTCGTTTATTAAGTCAAAGTAAAATAACACTAGAAACTTATGTACAATTTTTGCAACAAGTTACAGAAAAATCCAGTTCAAATAGTAATGTTGTACCTGAAGATGGAACAATACATGAACTTACAACTAATGCATTGATGTATTTAGAAAACTTGTTAGAATTCGCTGATATTATTGGTACTACTTTGTCATTTACTGAAGCTGNGCCACAAGCTACTACTAACACACTTANATATCTTACCACTATTGGCCANAATCATGCCTT] consensusID : consensus_7215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [GCACAGTTATCTACACCACCGATTTCTGACGCCGAACGTACGTGGTCGCTCTAGACTCCTCCCTGGATTCGTTTGGGATATAATTGCTGAGCGACTTATCAATGAAATAGATACCGAGTAAACTTGATTCTGAACATTATGCTATCTGCGCTGTGTGTTCTCGCTTAAATTAATGCTGAAGTGAATAGTATTTTGTTGGATCGTTTACAGTTAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCATCTGATATCTTAACTGAAGGAACAACACT] [+] EMBL CD114730 [GCACAGTTATCTACACCACCGATTTCTGACGCCGAACGTACGTGGTCGCTCTAGACTCCTCCCTGGATTCGTTTGGGATATAATTGCTGAGCGACTTATCAATGAAATAGATACCGAGTAAACTTGATTCTGAACATTATGCTATCTGCGCTGTGTGTTCTCGCTTAAATTAATGCTGAAGTGAATAGTATTTTGTTGGATCGTTTACAGTTAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCATCTGATATCTTAACTGAAGGAACAACACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7215#0 CTTTTTTTTATTAAGACAAACTTTCTGTCCAATGGATGATGCTACTTTAATAAGATTGAT 60 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 GGATCAAGAAGTCTCTGACAAAGAATCAGGAGATGGTTCAATAACTGAAGATACAGAACA 120 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 AATGGAGGATATTCCAAATAATATGTTGAATAGTTTACGTTTTCTTGCTAAATGGATGAG 180 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 TGAAAATCAATCATTTGTAAACAAACCACAAAGTATATCACGAGGATGTTTGGCAAAATA 240 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 TTGTGAATGTCGTCGTGAACTTATCCGTCTAAATTTAGTAAGAGTACGAGAATTATTAAG 300 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 AAAAGCTGAAAATCCATCATCATCATCTGGCACAGT-ATCTAAACCAG-GATTTCTGCCG 358 consensus_7215#1 -----------------------------GCACAGTTATCTACACCACCGATTTCTGACG 31 ******* ***** **** ******** ** consensus_7215#0 CCAAACGTACGTGGTCGCACTAAACGCCTCCCTGGATTCGTTTGGGATATAAGTGCTGTT 418 consensus_7215#1 CCGAACGTACGTGGTCGCTCTAGACTCCTCCCTGGATTCGTTTGGGATATAATTGCTGAG 91 ** *************** *** ** ************************** ***** consensus_7215#0 CGACTTATCAATGAAACAGAAACCGA-TGAACTTGATTCTGAACATTATGCTATC-GCTC 476 consensus_7215#1 CGACTTATCAATGAAATAGATACCGAGTAAACTTGATTCTGAACATTATGCTATCTGCGC 151 **************** *** ***** * ************************** ** * consensus_7215#0 TGGGTGTTCTCG-TTAAATTAATGC-AAAATGAAT-GTATTTTGTTGGATCGTTTACAGT 533 consensus_7215#1 TGTGTGTTCTCGCTTAAATTAATGCTGAAGTGAATAGTATTTTGTTGGATCGTTTACAGT 211 ** ********* ************ ** ***** ************************ consensus_7215#0 TAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCAT 593 consensus_7215#1 TAACTGCTAGTCCACAAGATTCTCAAGTGTTATTGTTCAATATATTTAAAAAGGGGTCAT 271 ************************************************************ consensus_7215#0 CTGATATCTTAACTGAAGGAACAACACTAACTCGTCTAATGCATCGAGCTCAAGGGCGGG 653 consensus_7215#1 CTGATATCTTAACTGAAGGAACAACACT-------------------------------- 299 **************************** consensus_7215#0 CAGAATTTCATATGGTTATGTCATTATTAGTAGTACTGAAAAAGTTTTTTCAAATTTCTG 713 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 ATGATCTTGTATCTGTACTTCAGGGTATTGATAATGTAATAATTGATTTTAATCAATTAG 773 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 TTCTTCGTTTATTAAGTCAAAGTAAAATAACACTAGAAACTTATGTACAATTTTTGCAAC 833 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 AAGTTACAGAAAAATCCAGTTCAAATAGTAATGTTGTACCTGAAGATGGAACAATACATG 893 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 AACTTACAACTAATGCATTGATGTATTTAGAAAACTTGTTAGAATTCGCTGATATTATTG 953 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 GTACTACTTTGTCATTTACTGAAGCTGNGCCACAAGCTACTACTAACACACTTANATATC 1013 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 TTACCACTATTGGCCANAATCATGCCTT 1041 consensus_7215#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||