|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1161 fasta sequence
[GCCANATCTTGGCACGAGGGTCTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTTGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTAAAAATAAAGCAGATTATCAGACACGGACTACTTCGGGGAAAGAACAAAAATCTGTCCACTGGTCTGAAGATTTAGATACTTCAAATTCAAATCGAAAACAGTTGACCAGTGATATTGCTACACTAAACAATAATAATAAAATTATTCCAACAAATTTTGACAGTATCAATACTACAATTCCTACTACAACTACTAATAATATTGATAGCGTAACAAGTAATGTTAATAATAACCTTGTTAATAGTTATGGAACTGGTTATCCTCAATTTAGAAGACAACAATTATCAGTACGTGATGTGTCCAACGATAATGTTACAAAAGCTTATTCATGTTCAAAAAATATCGAAGAATTTCTTAGGAGAAGATCGTTATCCTCTAATCCAGCAAATGCATCCAATCAGATGATTAGAAGCCAGAGTTTATATGCTTACCTTTCTATGCGTAATGAATCGGCAAATAATGTGGCTAAAACTAGCGCANACGCATTGGCCAATACGACATTTTCAATAAAACCAGACAACAGCCGTAATATAGTTGACGTACAACCAAAGCTACCTCTCANACAGATGGCTGTTACTACTTCTANCACTCCCAATAATAATAGTAACCATAGACAAAGTGATAATTATTCCGAATATTCTATCGCTCGAAGATCAGTTTGTTCCTCTGTGTACGGAGCAGAGAGCTCTATTTCTCCAAATTTATCCACAGAGCTTCATCTATCTTCTAATAGAAGAAGTATATCACCAAGTTTTCAAAGATTTTCAAATCAATCGGAAACTGACGGAGTTGTAGACAAACATCAGTCTAACAAAACAAATCTCACTGTACAAATCTTTCTGCCGGATAGAACTAGTATACATATCCCAGTTCATAGTACGACTACTACATTACAAGCTTTACAAAAGTTATGTAGTACCAATCAAAAACTTCTTACAATGAAACATGCTTTGGTTGAAAGAATTCCGGTTTTACACTTAGAACGTTGTCTAGAAGATGATGAATATTTATTCAATTATTTATCAAGTTG]
[+] EMBL CD080711 [GCCANATCTTGGCACGAGGGTCTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTTGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTAAAAATAAAGCAGATTATCAGACACGGACTACTTCGGGGAAAGAACAAAAATCTGTCCACTGGTCTGAAGATTTAGATACTTCAAATTCAAATCGAAAACAGTTGACCAGTGATATTGCTACACTAAACAATAATAATAAAATTATTCCAACAAATTTTGACAGTATCAATACTACAATTCCTACTACAACTACTAATAATATTGATAGCGTAACAAGTAATGTTAATAATAACCTTGTTAATAGTTATGGAACTGGTTATCCTCAATTTAGAAGACAACAATTATCAGTACGTGATGTGTCCAACGATAATGTTACAAAAGCTTATTCATGTTCAAAAAATATCGAAGAATTTCTTAGGAGAAGATCGTTATCCTCTAATCCAGCAAATGCATCCAATCAGATGATTAGAAGCCAGAGTTTATATGCTTACCTTTCTATGCGTAATGAATCGGCAAATAATGTGGCTAAAACTAGCGCANACGCATTGGCCAATACGACATTTTCAATAAAACCAGACAACAGCCGTAATATAGTTGACGTACAACCAAAGCTACCTCTCANACAGATGGCTGTTACTACTTCTANCACTCCCAATAAT ]
[-] EMBL CD074636 [ TCCAATCAGATGATTAGAAGCCAGAGTTTATATGCTTACCTTTCTATGCGTAATGAATCGGCAAATAATGTGGCTAAAACTAGCGCAAACGCATTGGCCAATACGACATTTTCAATAAAACCAGACAACAGCCGTAATATAGTTGACGTACAACCAAAGCTACCTCTCAAACAGATGGCTGTTACTACTTCTACAACTCCCAATAATAATAGTAACCATAGACAAAGTGATAATTATTCCGAATATTCTATCGCTCGAAGATCAGTTTGTTCCTCTGTGTACGGAGCAGAGAGCTCTATTTCTCCAAATTTATCCACAGAGCTTCATCTATCTTCTAATAGAAGAAGTATATCACCAAGTTTTCAAAGATTTTCAAATCAATCGGAAACTGACGGAGTTGTAGACAAACATCAGTCTAACAAAACAAATCTCACTGTACAAATCTTTCTGCCGGATAGAACTAGTATACATATCCCAGTTCATAGTACGACTACTACATTACAAGCTTTACAAAAGTTATGTAGTACCAATCAAAAACTTCTTACAATGAAACATGCTTTGGTTGAAAGAATTCCGGTTTTACACTTAGAACGTTGTCTAGAAGATGATGAATATTTATTCAATTATTTATCAAGTTG]
consensusID : consensus_7224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 475 fasta sequence
[CCAAACAACAAAAGTTCAGTACAATACAGGTATTCAGCAGAATTAGTAGATGCAACACATCAAAACACAAGGACGGGTTATTCAACACAAAGGGTAGATGACAGCATACGAGGAAATTGTTATTTACCTAGGACAAATTTACCTCATATACAACAAGCTCAACATGATTCCCAACTGAAAAAACCTCAGAAAACAATAAATTTCCTCAATTCTACTGAAGCACGTGATACTAATAATTCCCAAGCTATTGCAGATATTCGGAATAGAAAATATCAAAAACATGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCGGTTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTTGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTAAAAATAAAGCAGATTATCAGACACGGACTACTTCGGGGAAAGAAC]
[-] EMBL CD180322 [CCAAACAACAAAAGTTCAGTACAATACAGGTATTCAGCAGAATTAGTAGATGCAACACATCAAAACACAAGGACGGGTTATTCAACACAAAGGGTAGATGACAGCATACGAGGAAATTGTTATTTACCTAGGACAAATTTACCTCATATACAACAAGCTCAACATGATTCCCAACTGAAAAAACCTCAGAAAACAATAAATTTCCTCAATTCTACTGAAGCACGTGATACTAATAATTCCCAAGCTATTGCAGATATTCGGAATAGAAAATATCAAAAACATGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCGGTTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTTGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTAAAAATAAAGCAGATTATCAGACACGGACTACTTCGGGGAAAGAAC]
[-] EMBL CD180459 [ ACAAGGACGGGTTATTCAACACAAAGGGTAGATGACAGTATACAAGGAAATTGTTATTTACCTAGGACAAATTTACCTCATATACAACAAGCTCAACATGATTCCCAACTGAAAAAACCTCAGAAAACAATAAATTTCCTCAATTCCACTGAAGCACGTGATACTAATAATTCCCAAGCTATTGCAGATATTCGGAATAGAAAATATCAAAAACATGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCAGTTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTTGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTGAAAATAAAGCAGATTATCAGACACGGACTACTTCGGGGAAA ]
consensusID : consensus_7224#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence
[GTCAAAACGCTGTCAATAATAACAACAGTCAGCCAAACAACAAAAGTTCAGTACAATACAGGTATTCAGCAGAATTAGTAGATGCAACACATCAAAACACAAGGACGGGTTATTCAACACAAAGGGACAAATTTACCTCATATACAACAAGCTCAACATGATTCCCAACTGAAAAAAACCTCAGAAAACAATAAATTTCCTCAATTCCACTGAAGCACGTGATACTAATAATTCCCAAGCTATTGCAGATATTCGGAATAGAAAATATCAAAAACATGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCAGTTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTCGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTACAAATACAGCAGATTATCAGACACGGACTACTTCGGGGAAAGA]
[+] EMBL CD180343 [GTCAAAACGCTGTCAATAATAACAACAGTCAGCCAAACAACAAAAGTTCAGTACAATACAGGTATTCAGCAGAATTAGTAGATGCAACACATCAAAACACAAGGACGGGTTATTCAACACAAAGGGACAAATTTACCTCATATACAACAAGCTCAACATGATTCCCAACTGAAAAAAACCTCAGAAAACAATAAATTTCCTCAATTCCACTGAAGCACGTGATACTAATAATTCCCAAGCTATTGCAGATATTCGGAATAGAAAATATCAAAAACATGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCAGTTACACGTTATCATGTAATAATGGATCGTGTATTGGTCGAAGTGTTTCGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATTAAAAAACTTTACAAATACAGCAGATTATCAGACACGGACTACTTCGGGGAAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 GCCANATCTTGGCACGAGGGTCTACACGTTATCATGTAATAATGGATCGTGTATTGGTCG 60
consensus_7224#1 ----------------------------------------------------------CC 2
consensus_7224#2 --------------------------GTCAAAACGCTGTCAATAATAACAACAGTCAGCC 34
consensus_7224#0 AAGTGTTTTGGAAAATTCAGTAACTAACAGTAATGATATCAACAATTTCAATTATGGATT 120
consensus_7224#1 AAACAAC---AAAAGTTCAGTACAATA-CAGGTATTCAGCAGAATTAGTAGATGCAACAC 58
consensus_7224#2 AAACAAC---AAAAGTTCAGTACAATA-CAGGTATTCAGCAGAATTAGTAGATGCAACAC 90
consensus_7224#0 AAAAAACTTTAAAAATAAAGCAGATTATCAGACACGGACTACTTCGGGGAAAGAACAAAA 180
*** *** **** * ** * * ** *** * * * * * * * *
consensus_7224#1 ATCAAAACACAAG---GACGGGTTATTCAACACAAAGGGTAGATGACAGCATACGAGGAA 115
consensus_7224#2 ATCAAAACACAAG---GACGGGTTATTCAACACAAAGGG--------------------- 126
consensus_7224#0 ATCTGTCCACTGGTCTGAAGATTTAGATACTTCAAATTCAAATCGAAAACAGTTGACCAG 240
*** *** * ** * *** * ****
consensus_7224#1 ATTGTTATTTACCTAGGACAAATTTACCTCATATA---CAACAAGCTCAACATGATTCCC 172
consensus_7224#2 -----------------ACAAATTTACCTCATATA---CAACAAGCTCAACATGATTCCC 166
consensus_7224#0 TGATATTGCTACACTAAACAATAATAATAAAATTATTCCAACAAATTT--TGACAGTATC 298
**** ** * ** ****** * * * *
consensus_7224#1 AACTGAAAAAA-CCTCAGAAAACAATAAATTTCCTCAATTCTACTGAAGCACGTGATACT 231
consensus_7224#2 AACTGAAAAAAACCTCAGAAAACAATAAATTTCCTCAATTCCACTGAAGCACGTGATACT 226
consensus_7224#0 AATACTACAATTCCTACTACAACTACTAATAATATTGAT---AGCGTAACAAGTAATGTT 355
** * ** *** * *** * *** * ** * * * ** ** ** *
consensus_7224#1 AATAATTCCCAAGCTA----TTGCAGA------TATTCGGAATAGAAAATATCAAAAACA 281
consensus_7224#2 AATAATTCCCAAGCTA----TTGCAGA------TATTCGGAATAGAAAATATCAAAAACA 276
consensus_7224#0 AATAATAACCTTGTTAATAGTTATGGAACTGGTTATCCTCAATTTAGAAGACAACAATTA 415
****** ** * ** ** ** *** * *** * ** * * ** *
consensus_7224#1 TGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCGGTTACACGTTATCATGTAATAA 341
consensus_7224#2 TGAGTATGGTATTCAGTCAAGTAAAGATAATAGAAGCAGTTACACGTTATCATGTAATAA 336
consensus_7224#0 TCAGTACG-TGATGTGTCCAACGATAATGTTACAAAAGCTTATTCATGTTCAAAAAATAT 474
* **** * * * *** * * ** ** ** *** * * *** ****
consensus_7224#1 TGGATCGTGTATTGGTCGAAG--TGTT-TTGGAAAATTCAGTAACTAACAGTAATGATAT 398
consensus_7224#2 TGGATCGTGTATTGGTCGAAG--TGTT-TCGGAAAATTCAGTAACTAACAGTAATGATAT 393
consensus_7224#0 CGAAGAATTTCTTAGGAGAAGATCGTTATCCTCTAATCCAGCAAATGCATCCAATCAGAT 534
* * * * ** * **** *** * *** *** ** * *** * **
consensus_7224#1 CAACAATTTCAATTATGGAT-TAAAAAACTTTAAAAATAAAGCAGATTATCAGACACGG- 456
consensus_7224#2 CAACAATTTCAATTATGGAT-TAAAAAACTTTACAAATACAGCAGATTATCAGACACGG- 451
consensus_7224#0 GATTAGAAGCCAGAGTTTATATGCTTACCTTTCTATGCGTAATGAATCGGCAAATAATGT 594
* * * * * ** * * **** * * ** ** * * *
consensus_7224#1 -ACTACTTCGGGGAAAGAAC---------------------------------------- 475
consensus_7224#2 -ACTACTTCGGGGAAAGA------------------------------------------ 468
consensus_7224#0 GGCTAAAACTAGCGCANACGCATTGGCCAATACGACATTTTCAATAAAACCAGACAACAG 654
*** * * * *
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 CCGTAATATAGTTGACGTACAACCAAAGCTACCTCTCANACAGATGGCTGTTACTACTTC 714
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 TANCACTCCCAATAATAATAGTAACCATAGACAAAGTGATAATTATTCCGAATATTCTAT 774
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 CGCTCGAAGATCAGTTTGTTCCTCTGTGTACGGAGCAGAGAGCTCTATTTCTCCAAATTT 834
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 ATCCACAGAGCTTCATCTATCTTCTAATAGAAGAAGTATATCACCAAGTTTTCAAAGATT 894
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 TTCAAATCAATCGGAAACTGACGGAGTTGTAGACAAACATCAGTCTAACAAAACAAATCT 954
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 CACTGTACAAATCTTTCTGCCGGATAGAACTAGTATACATATCCCAGTTCATAGTACGAC 1014
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 TACTACATTACAAGCTTTACAAAAGTTATGTAGTACCAATCAAAAACTTCTTACAATGAA 1074
consensus_7224#1 ------------------------------------------------------------
consensus_7224#2 ------------------------------------------------------------
consensus_7224#0 ACATGCTTTGGTTGAAAGAATTCCGGTTTTACACTTAGAACGTTGTCTAGAAGATGATGA 1134
consensus_7224#1 ---------------------------
consensus_7224#2 ---------------------------
consensus_7224#0 ATATTTATTCAATTATTTATCAAGTTG 1161
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||