These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 564 fasta sequence [TCAGCCTTGTGAATTCCGAAGAATCTGGGATTTCATCATGAGGTGTAATAATTATTTCTTAAACACATAGGGGAGAATTTAAATGGTTTGAATTGTTTATTCTAGTTAGCGTTTTTTACCAAGGTTGTTTTCCACGAGATGAAGTTGTCAATCCTACTCCAAAACCTCCAACTTTGACCAGATTTGAGAGCATCAGTAGCCGTAGATAAGCTACAGTTCGAGTTAAACATGTTATGCTCAACAGTTATTTCCA-TTTTTATTTTGTAGTTTGATTGCATTTGCCATAGCACTATTGATTATTCTCGTGAAGAAGATCAGTGAGAAATATCCACTGAATGTCGTGTTTGTAATTATTTATGTAAGAATTTCTAATGATCATTTCACATATATTTGCCTATTTTCTTTCTAAAAATCCAATTTAATAAAACGTACTGCTTGTAGATGGTAATCCAACGTGACTGATTTTTATGTCATAGAAGAGATTTGCGAAATCGGAATACTGACTGGTTTACGGATTAATTTAAATCTTCGATTTGTCGAGATTGATATGTTAGACGTTTCACT] [+] EMBL AI976557 [TCAGCCTTGTGAATTCCGAAGAATCTGGGATTTCATCATGAGGTGTAATAATTATTTCTTAAACACATAGGGGAGAATTTAAATGGTTTGAATTGTTTATTCTAGTTAGCGTTTTTTACCAAGGTTGTTTTCCACGAGATGAAGTTGTCAATCCTACTCCAAAACCTCCAACTTTGACCAGATTTGAGAGCATCAGTAGCCGTAGATAAGCTACAGTTCGAGTTAAACATGTTATGCTCAACAGTTATTTTCATTTTTTTTTTTGTAGTTTGATTGCATTTGCCATAGCACTATTGATTATTCTCGTGAAGAAGATCAGTGAGAAATATCCACTGAATGTCGTGTTTGTAATTATTTATGTAAGAATTTCTAATGATCATTTCACATATATTTGCCTATTTTCTTTCTAAAAATCCAATTTAATAAAACGTACTGCTTGTAGATGGTAATCCAACGTGACTGATTTTTATGTCATAGAAGAGATTTGCGAAATCGGAATACTGACTGGTTTACGGATTAATTTAAATCTTCGATTTGTCGAGATTGATATGTTAGACGTTTCACT] [+] EMBL AI976136 [TCAGCCTTGTGAATTCCGAAGAATCTGGGATTTCATCATGAGGTGTAATAATTATTTCTTAAACACATAGGGGAGAATTTAAATGGTTTGAATTGTTTATTCTAGTTAGCGTTTTTTACCAAGGTTGTTTTCCACGAGATGAAGTTGTCAATCCTACTCCAAAACCTCCAACTTTGACCAGATTTGAGAGCATCAGTAGCCGTAGATAAGCTACAGTTCGAGTTAAACATGTTATGCTCAACAGTTATTTCCA TTTTTATTTTGTAGTTTGATTGCATTTGCCATAGCACTATTGATTATTCTCGTGAAGAAGATCAGTGAGAAATATCCACTGAATGTCGTGTTTGTAATTATTTATGTAAGAATTTCTAATGATCATTTCACATATATTTGCCTATTTTCTTTCTAAAAATCCAATTTAATAAAACGTACTGCTTGTAGATGGTAATCCA ] [+] EMBL BF936357 [TCAGCCTTGTGAATTCCGAAGAATCTGGGATTTCATCATGAGGTGTAATAATTATTTCTTAAACACATAGGGGAGAATTTAAATGGTTTGAATTGTTTATTCTAGTTAGCGTTTTTTACCAAGGTTGTTTTCCACGAGATGAAGTTGTCAATCCTACTCCAAAACCTCCAACTTTGACCAGATTTGAGAGCATCAGTAGCCGTAGATAAGCTACAGTTCGAGTTAAACATGTTATGCTCAACAGTTATTTCCA TTTTTATTTTGTAGTTTGATTGCATTTGCCATAGCACTATTGATTATTCTCGTGAAGAAGATCAGTGAGAAATATCCACTGAATGTCGTGTTTGTAATTATTTATGTAAGAATTTCTAATGATCATTTCACATATATTTGCCTATTTTCTTTCTAAAAATCCAATTTAATAAAACGTACTGCTTGTAGATGGTAATCCA ] consensusID : consensus_7226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [CCTGAGGCCAGATCGGCACGAGGCTGACTAGGAAGTGAGATCAGTTCATTCAACACTACAGACAAATCTTGGAAGTATGGTTCCTATTGTTGAAAATGCTGAATGGGAAGGAGTCAATGTGATGAAACATGTTGATCGTTTACGTGTTGTATCAACATATACCGAAACAGTGCTTATACTTGTTGTAATACAAATATTAATAACACTTTTCATCATAATGCTCTCGTCAATAATTGGGAATCATTTTCGAGACAATAGCCAACCGATACCGTCCATTGTAGCTGGTTTATTCATTTTGATTGCATTTGTGATAGCAGTACTGGTTGTTCTCGTGAAGAAGATCAGTGAGAAATATCCACTGAATGTCATGTTTGTAATTATTTATTCTATTTTCATGGCAATAGCGATGGCAGTTTGGAGTATAGAGTTATGTATTCTTTACAAACTTGCAATCTTTGGAATCAGTCTGGTGTTGTT] [+] EMBL CD084069 [CCTGAGGCCAGATCGGCACGAGGCTGACTAGGAAGTGAGATCAGTTCATTCAACACTACAGACAAATCTTGGAAGTATGGTTCCTATTGTTGAAAATGCTGAATGGGAAGGAGTCAATGTGATGAAACATGTTGATCGTTTACGTGTTGTATCAACATATACCGAAACAGTGCTTATACTTGTTGTAATACAAATATTAATAACACTTTTCATCATAATGCTCTCGTCAATAATTGGGAATCATTTTCGAGACAATAGCCAACCGATACCGTCCATTGTAGCTGGTTTATTCATTTTGATTGCATTTGTGATAGCAGTACTGGTTGTTCTCGTGAAGAAGATCAGTGAGAAATATCCACTGAATGTCATGTTTGTAATTATTTATTCTATTTTCATGGCAATAGCGATGGCAGTTTGGAGTATAGAGTTATGTATTCTTTACAAACTTGCAATCTTTGGAATCAGTCTGGTGTTGTT] consensusID : consensus_7226#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [CCCAATTATTGACGAGAGCATTATGATGAAAAGTGTTATTAATATTTGTATTACAACAAGTATAAGCACTGTTTCGGTATATGTTGATACAACACGTAAACGATCAACATGTTTCATCACATTGACTCTTTCCCATTCAGCATTTTCAACAATAGGAACCATTACTTCCAAGATTTGTGTGTAACGTTGAATGAGCTGGTCTCAGTTCCTAATCAGATTCAAAATAACCACATTCATTATATGGAGTTGTATTGAATACTTTGTTTATG] [+] EMBL CD189757 [CCCAATTATTGACGAGAGCATTATGATGAAAAGTGTTATTAATATTTGTATTACAACAAGTATAAGCACTGTTTCGGTATATGTTGATACAACACGTAAACGATCAACATGTTTCATCACATTGACTCTTTCCCATTCAGCATTTTCAACAATAGGAACCATTACTTCCAAGATTTGTGTGTAACGTTGAATGAGCTGGTCTCAGTTCCTAATCAGATTCAAAATAACCACATTCATTATATGGAGTTGTATTGAATACTTTGTTTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7226#0 -------TCAGCCTTGTG-AATTCCGA--AGAATCTGGGATTTCATCATGAGGTGTAATA 50 consensus_7226#1 CCTGAGGCCAGATCGGCACGAGGCTGACTAGGAAGTGAGATCAGTTCATTCAACACTACA 60 consensus_7226#2 ------------------------------------------------------------ consensus_7226#0 ATTATTTCTTAAACACATAGG----------GGAGAATTTAAATGGTTTGAATTGTTTAT 100 consensus_7226#1 GACAAATCTTGGAAGTATGGTTCCTATTGTTGAAAATGCTGAATGGGAAGGAGTCAATGT 120 consensus_7226#2 ------------------------------------------------------------ consensus_7226#0 TCTAGTTAGCGTTTTTTACCAAGGTTGTTTTCCACGAGAT---GAAGTTGTCAATCCTAC 157 consensus_7226#1 GATGAAACATGTTGATCGTTTACGTGTTGTATCAACATATACCGAAACAGTGCTTATACT 180 consensus_7226#2 ------------------------------------------CCCAATTATTGACGAGAG 18 * * consensus_7226#0 TCCAAAACCTCCAACTTTGACCAGATTTGAGAGCATCA-GTAGCCGTAGATAAGCTACAG 216 consensus_7226#1 TGTTGTAATACAAATATTAATAACACTTTTCATCATAATGCTCTCGTCAATAA-TTGGGA 239 consensus_7226#2 CATTATGATGAAAAGTGTTATTAATATTTGTATTACAA--CAAGTATAAGCACTGTTTCG 76 ** * * * ** * * * * * * consensus_7226#0 TTCGAGTTAAACATGTTATGCTCAACAGTTATTTCCATTTT---TATTTTGT--AGTTTG 271 consensus_7226#1 ATCATTTTCGAGACAATA-GCCAACCGATACCGTCCATTGTAGCTGGTTTATTCATTTTG 298 consensus_7226#2 GTATATGTTGATACAACACGTAAACGATCAACATGTTTCAT--CACATTGACTCTTTCCC 134 * * * * * * * * * * ** * consensus_7226#0 ATT--GCATTTGCCATAGCACTATTGATTATTCTCGTGAAGAAGATCAGTGAGAAATATC 329 consensus_7226#1 ATT--GCATTTGTGATAGCAGTACTGGTTGTTCTCGTGAAGAAGATCAGTGAGAAATATC 356 consensus_7226#2 ATTCAGCATTTTCAACAATAGGAACCATTACTTCC------AAGATTTGTGTGTAACGT- 187 *** ****** * * * * ** * * ***** *** * ** * consensus_7226#0 CACTGAATGTCGTGTTTGTAATTATTTATGTAA--------GAATTTCTAATGATCATTT 381 consensus_7226#1 CACTGAATGTCATGTTTGTAATTATTTATTCTATTTTCATGGCAATAGCGATGGCAGTTT 416 consensus_7226#2 ---TGAATGAGCTGGTCTCAGTTCCTAATCAGATT--CAAAATAACCACATTCATTATAT 242 ****** ** * * ** * ** * * * * * consensus_7226#0 CACATATATTTGCCTATTTTCTTTCTAAAAATCCAATTTAATAAAACGTACTGCTTGTAG 441 consensus_7226#1 GGAGTATAGAGTTATGTATTCTTTACAAACTTGCAATCTTTGGAATCAGTCTGGT-GTTG 475 consensus_7226#2 GGAGTTGTATTGAATACTTTGTTTATG--------------------------------- 269 * * ** *** consensus_7226#0 ATGGTAATCCAACGTGACTGATTTTTATGTCATAGAAGAGATTTGCGAAATCGGAATACT 501 consensus_7226#1 TT---------------------------------------------------------- 477 consensus_7226#2 ------------------------------------------------------------ consensus_7226#0 GACTGGTTTACGGATTAATTTAAATCTTCGATTTGTCGAGATTGATATGTTAGACGTTTC 561 consensus_7226#1 ------------------------------------------------------------ consensus_7226#2 ------------------------------------------------------------ consensus_7226#0 ACT 564 consensus_7226#1 --- consensus_7226#2 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||