These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 356 fasta sequence [ATGCACCTCACAAATACACAAAATATGAAAACCACACTGTGACCCGTAAAAGCTAGAATATTTACGCTTGACCTGTGAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGC] [+] EMBL CD111255 [ATGCACCTCACAAATACACAAAATATGAAAACCACACTGTGACCCGTAAAAGCTAGAATATTTACGCTTGACCTGTGAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACTTGAGAGTCATAAGTCG ] [+] EMBL CD111388 [ATGCACCTCACAAATACACAAAATATGAAAACCACACTGTGACCCGTAAAAGCTAGAATATTTACGCTTGACCTGTGAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCG ] [+] EMBL CD111484 [ATGCACCTCACAAATACACAAAATATGAAAACCACACTGTGACCCGTAAAGGCTAGAATATTTACGCTTGACCTGTGAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCG ] [-] EMBL CD110974 [ TGCACCTCACAAATACACAAAATATGAAAACCACACTGTGACCCGTAAAAGCTAGAATATTTACGCTTGACCTGTGAATATTTGTGATTAGAAACAGTCGTCCACTGTATATCTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGC] consensusID : consensus_7230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [GCTNNATTGGGACCCTGCGNAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGCTG] [-] EMBL CD095159 [GCTNNATTGGGACCCTGCGNAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGTTTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTAGACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAAAACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATACTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7230#0 ATGCACCTCACAAATACACAAAATATGAAAACCACACTGTGACCCGTAAAAGCTAGAATA 60 consensus_7230#1 ----------------------------------------------------------GC 2 consensus_7230#0 TTTACGCTTGACCTGTGAA-TATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGT 119 consensus_7230#1 TNNATTGGGACCCTGCGNAATATTTGTGATTAGAAACAGTCGTCCACTGTATATGTAGGT 62 * * **** * * **************************************** consensus_7230#0 TTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTA 179 consensus_7230#1 TTAAAGGAGCAAGGGCTAATTCAGCAAGATGACGTGAAGACTTAACAGTTTAAATGCGTA 122 ************************************************************ consensus_7230#0 GACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAA 239 consensus_7230#1 GACGAAAAGCTCTGGTAATTAAGTTGATAAACGCAAGTAACAAGCCTCCAAACAAAGAAA 182 ************************************************************ consensus_7230#0 AACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATA 299 consensus_7230#1 AACAGGGCGGGAAGTCAATTACTTTACAAAGTATAGAGGTTCGTGTCTTGCCAAAAAATA 242 ************************************************************ consensus_7230#0 CTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGC-- 356 consensus_7230#1 CTTTGTGTACTAGGGGAGCAGACAGAGTAGCGTGAGGACATGAGAGTCATAAGTCGCTG 301 ********************************************************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||