These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 800 fasta sequence [GTCAGCGAATTGTAGTGAAACCTGTACCTCAAGAAGTTCTGTTAATCGATATACAGGTTTGTCAGACGACAAGAACGATGAAGTCACTACTAGTGTATGCTTAGATGCTTCTGGAAGTCGATGCAAATCGAAATCAAGTGTTAGCTCATTGAATACATCAACAAATACAACTAATAGTATTAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAGTTCATCATCTACACGGTCTACACGTGCAGCATTGTCATCAACTGTAACGGTTTAGAGTTAACGGTGCTGGGAGATATATTCGATACTTTTTTTGTCTACATTTTACTTTTTCTTGTTCTAAATGTGACACTCCAGTTTTTATATGCACTTCATTCTCTTGATAATTTCATAACTTTTTTCTAATTGCTAAGCGAGTAAACTTCAATTTATTGTAACACTTTCTTGTTGTCTGTCGGTGGTTTTTTTGTACGTCAGTAGATCTATGTAAGTCTGAATAATGTGTACTATATGAAATACTACTGCTACTTTAAAAACAATGTCAGTTCAAAAGTGATATATCTCATCATTCATGTTATTGTATGTAGTTGCTATTCACTATTGTCATATTATCTTTTGTTTCCCTTAATCAATCTGTACTCACGTTTGGAGTATATTGTCCTGCTTTACTTCACTCATTTCCATTACATTTGTATTTCTATCCTGTGAATGAGTAATGGTCCTGTCTTCTGTACTGAAAAAAAA-CTATGNATGATATGCTGNTAATAAC-TACATGATATATA] [+] EMBL CD081850 [GTCAGCGAATTGTAGTGAAACCTGTACCTCAAGAAGTTCTGTTAATCGATATACAGGTTTGTCAGACGACAAGAACGATGAAGTCACTACTAGTGTATGCTTAGATGCTTCTGGAAGTCGATGCAAATCGAAATCAAGTGTTAGCTCATTGAATACATCAACAAATACAACTAATAGTATTAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAGTTCATCATCTACACGGTCTACACGTGCAGCATTGTCATCAACTGTAACGGTTTAGAGTTAACGGTGCTGGGAGATATATTCGATACTTTTTTTGTCTACATTTTACTTTTTCTTGTTCTAAATGTGACACTCCAGTTTTTATATGCACTTCATTCTCTTGATAATTTCATAACTTTTTTCTAATTGCTAAGCGAGTAAACTTCAATTTATTGTAACACTTTCTTGTTGTCTGTCGGTGGTTTTTTTGTACGTCAGTAGATCTATGTAAGTCTGAATAATGTGTACTATATGAAATACTACTGCTACTTTAAAAACAATGTCAGTTCAAAAGTGATATATCTCATCATTCATGTTATTGTATGTAGTTGCTATTCACTATTGTCATATTATCTTTTGTTTCCCTTAATCAATCTGTACTCACGTTTGGAGTATATTGTCCTGCTTTACTTCACTCATTTCCATTACATTTGTATTTCTATCCTGTGAATGAGTAATGGTCCTGTCTTCTGTACTGAAAAAAAA CTATGNATGATATGCTGNTAATAAC TACATGATAT ] [-] EMBL CD166267 [ AGCGAATTGTAGTGAAACCTGTACCTCAAGAAGTTCTGTTAATCGATATACAGGTTTGTCAGACGACAAGAACGATGAAGTCACTACTAGTGTATGCTTAGATGCTTCTGGAAGTCGATGCAAATCGAAATCAAGTGTTAGCTCATTGAATACATCAACAAATACAACTAATAGTATTAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAGTTCA ] [-] EMBL CD075565 [ ATTATATAAAGCAGTCAGATCATATACCTAGTTCATCATCTACACGGTCTACACGTGCAGCATTGTCATCAACTGTAACGGTTTAGAGTTAACGGTGCTGGGAGATATATTCGATACTTTTTTTGTCTACATTTTACTTTTTCTTGTTCTAAATGTGACACTCCAGTTTTTATATGCACTTCATTCTCTTGATAATTTCATAACTTTTTTCTAATTGCTAAGCGAGTAAACTTCAATTTATTGTAACACTTTCTTGTTGTCTGTCGGTGGTTTTTTTGTACGTCAGTAGATCTATGTAAGTCTGAATAATGTGTACTATATGAAATACTACTGCTACTTTAAAAACAATGTCAGTTCAAAAGTGATATATCTCATCATTCATGTTATTGTATGTAGTTGCTATTCACTATTGTCATATTATCTTTTGTTTCCCTTAATCAATCTGTACTCACGTTTGGAGTATATTGTCCTGCTTTACTTCACTCATTTCCATTACATTTGTATTTCTATCCTGTGAATGAGTAATGTTCCTGTCTTCTGTACTGAAAAAAAACCTATGATTGATATGCTGTTAATAACTTACATGATATATA] consensusID : consensus_7231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [GAGTAATGTTCCTGTCTTCTGTACTGAAAAAAAAACCTATGATTGATATGCTGTTAATAACTTACATGATATATAAATTGTGTTAAAAAACCCGTTTAGAATTTATGTTACACCCTCTTTCAATACAAATCTGGTCAGCGCTTCGATAGAGATAAAATTAAATACAGTTCAACTAAAGAACGAACTCCTATCTCTTACACGAGACGTGTTGATTGCATTTGTTGTAGATGGGTGTTATGTATGCGCGTATGCAGGTGAGTATGCTATTACTAGTGTGCATAT] [+] EMBL CD114640 [GAGTAATGTTCCTGTCTTCTGTACTGAAAAAAAAACCTATGATTGATATGCTGTTAATAACTTACATGATATATAAATTGTGTTAAAAAACCCGTTTAGAATTTATGTTACACCCTCTTTCAATACAAATCTGGTCAGCGCTTCGATAGAGATAAAATTAAATACAGTTCAACTAAAGAACGAACTCCTATCTCTTACACGAGACGTGTTGATTGCATTTGTTGTAGATGGGTGTTATGTATGCGCGTATGCAGGTGAGTATGCTATTACTAGTGTGCATAT] consensusID : consensus_7231#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence [CTAATAGTATTAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAGTTCATCATCTACACGGTCTACACGTGCAACATTGTCATCAACTGTAACGGTGTACAGTTAACAGTGCTGGGAGATATATTCGATACTTCATGCGTCTACATTCAACTTTACCTTGTTTAGAGCAGGCTGTGATGTTCATTATAACTAAGTTCAAATGTTATGGGTGGGATGAGGAAAGTGCCACATGGGG] [+] EMBL CD192095 [CTAATAGTATTAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAGTTCATCATCTACACGGTCTACACGTGCAACATTGTCATCAACTGTAACGGTGTACAGTTAACAGTGCTGGGAGATATATTCGATACTTCATGCGTCTACATTCAACTTTACCTTGTTTAGAGCAGGCTGTGATGTTCATTATAACTAAGTTCAAATGTTATGGGTGGGATGAGGAAAGTGCCACATGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7231#0 GTCAGCGAATTGTAGTGAAACCTGTACCTCAAGAAGTTCTGTTAATCGATATACAGGTTT 60 consensus_7231#2 ------------------------------------------------------------ consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 GTCAGACGACAAGAACGATGAAGTCACTACTAGTGTATGCTTAGATGCTTCTGGAAGTCG 120 consensus_7231#2 ------------------------------------------------------------ consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 ATGCAAATCGAAATCAAGTGTTAGCTCATTGAATACATCAACAAATACAACTAATAGTAT 180 consensus_7231#2 --------------------------------------------------CTAATAGTAT 10 consensus_7231#1 ---------------------------------------GAGTAATGTTCCTGTCTTCTG 21 ** consensus_7231#0 TAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAG 240 consensus_7231#2 TAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAG 70 consensus_7231#1 TACTGAAAAAAAAACCTATGATTGA---TATGCTGTTAATAACTTACATGATATATAAAT 78 ** ***** ** * ** ** ** *** * * ** * * * ** ***** * consensus_7231#0 TTCATCATCTACACGGTCTACA---CGTGCAGCATTGTCATCAACTGTAACGGTTTAGAG 297 consensus_7231#2 TTCATCATCTACACGGTCTACA---CGTGCAACATTGTCATCAACTGTAACGGTGTACAG 127 consensus_7231#1 TGTGTTAAAAAACCCGTTTAGAATTTATGTTACACCCTCTTTCAATACAAATCTGGTCAG 138 * * * * * ** ** * ** ** ** * * * ** * ** consensus_7231#0 TTAACGGTGCTGGGAGATATATTCGATACTTTTTTTGTCTACATTTTACTTTTTCTTGTT 357 consensus_7231#2 TTAACAGTGCTGGGAGATATATTCGATACTTCATGCGTCTACATTCAACTTTACCTTGTT 187 consensus_7231#1 C--GCTTCGATAGAGATAAAATTAAATACAGTTCAACTAAAGAACGAACTCCTATCTCTT 196 * * * * * *** **** * * * *** * ** consensus_7231#0 CTAAATGTGACACTC-CAGTTTTTATATGCACTTCATTCTCTTGATAATTTCATAACTTT 416 consensus_7231#2 TAGAGC---AGGCTG-TGATGTTCATTATAACTAAGTTCAAATGTTATGGGTGGGA---T 240 consensus_7231#1 ACACGAGACGTGTTGATTGCATTTGTTGTAGATGGGTGTTATGTATGCGCGTATGCAGGT 256 * ** * * * * * consensus_7231#0 TTTCTAATTGCTAAGCGAGTAAACTTCAATTTATTGTAACACTTTCTTGTTGTCTGTCGG 476 consensus_7231#2 GAGGAAAGTGCCACATGGGG---------------------------------------- 260 consensus_7231#1 GAGTATGCTATTACTAGTGTGCATAT---------------------------------- 282 * * * * consensus_7231#0 TGGTTTTTTTGTACGTCAGTAGATCTATGTAAGTCTGAATAATGTGTACTATATGAAATA 536 consensus_7231#2 ------------------------------------------------------------ consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 CTACTGCTACTTTAAAAACAATGTCAGTTCAAAAGTGATATATCTCATCATTCATGTTAT 596 consensus_7231#2 ------------------------------------------------------------ consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 TGTATGTAGTTGCTATTCACTATTGTCATATTATCTTTTGTTTCCCTTAATCAATCTGTA 656 consensus_7231#2 ------------------------------------------------------------ consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 CTCACGTTTGGAGTATATTGTCCTGCTTTACTTCACTCATTTCCATTACATTTGTATTTC 716 consensus_7231#2 ------------------------------------------------------------ consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 TATCCTGTGAATGAGTAATGGTCCTGTCTTCTGTACTGAAAAAAAACTATGNATGATATG 776 consensus_7231#2 ------------------------------------------------------------ consensus_7231#1 ------------------------------------------------------------ consensus_7231#0 CTGNTAATAACTACATGATATATA 800 consensus_7231#2 ------------------------ consensus_7231#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||