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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 994 fasta sequence
[ATTGTACCAAAATATAATATTGAATAAAGTCAACCAACCATCTTGTTGAAAATGATTAACGTTACCACCTTGCTGACAATATTATAGGTCAAATAGAATTTAAACCACAGTGTCAAGTATATAGCTTGGACTAGAGTAAATTGTTNTATGCTGAAATATTCTGTGCTAAAGTACCACTGAGAAATATAACTACATAAAAAGACATTACTATCTAGTAATTAAGTAGCAATACAAATACCATTCACA-GAGTAATACTTTAGTAA-TGAAAAAAATTCTAAAAATTAAGTCTGTGATATGGGAATGAACATATGGTGATGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAAAAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATGACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCTACCACAATTATCACGAGATTCTAGTAGTGGTGCTCCTCCCTTGCCGACGAGCAGTTTTAAAATACCAAGATGTCCCGCATATGCTGCTCGATGTGCAGGTGTAGCCCCGTCATTCTTTGTCTTTGCGAAACTATCAGCCCCAGCTTCTAATAATACTTTGCAAACATCTTCATGATTATTTCTAGCAGCATAATGCAGAGCTGTATACCCATAACTGTCTGGTATGTTAACATTAATATGTTTATTTAATAATTTCCGGACGCGATCAATATCACCACGTGTGGAAGCACCCANATCCCTCTTTCAAATCCATTTCACTTANATCTTGATGANGTGATTGATATAACGCTGTATGATTGGTACATGAATGTGAATTTTCAGTCATTCGCTGCTGAATTCTATCAGTTTTGAAGTAAAGTCTNCATCT]
[-] EMBL CD145546 [ATTGTACCAAAATATAATATTGAATAAAGTCAACCAACCATCTTGTTGAAAATGATTAACGTTACCACCTTGCTGACAATATTATAGGTCAAATAGAATTTAAACCACAGTGTCAAGTATATAGCTTGGACTAGAGTAAATTGTTNTATGCTGAAATATTCTGTGCTAAAGTACCACTGAGAAATATAACTACATAAAAAGACATTACTATCTAGTAATTAAGTAGCAATACAAATACCATTCACA GAGTAATACTTTAGTAA TGAAAAAAATTCTAAAAATTAAGTCTGTGATATGGGAATGAACATATGGTGATGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAAAAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATGACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCTACCACAATTATCACGAGATTCTAGTAG ]
[-] EMBL AI390087 [ TACCATTCACAGGAGAGATACTTTAGTAAGTGAAAAAAATACTAAAAATAAAGTCTCTGATATGGGAGTGAACATATGTAGGTGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAAAAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATGACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTG GAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCTACCACAATTATCACGAGAT ]
[+] EMBL CD145251 [ GTTATTTATCTACCATAGATCATACATTTAATTCATGACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCTACCACAATTATCACGAGATTCTAGTAGTGGTGCTCCTCCCTTGCCGACGAGCAGTTTTAAAATACCAAGATGTCCCGCATATGCTGCTCGATGTGCAGGTGTAGCCCCGTCATTCTTTGTCTTTGCGAAACTATCAGCCCCAGCTTCTAATAATACTTTGCAAACATCTTCATGATTATTTCTAGCAGCATAATGCAGAGCTGTATACCCATAACTGTCTGGTATGTTAACATTAATATGTTTATTTAATAATTTCCGGACGCGATCAATATCACCACGTGTGGAAGCACCCANATCCCTCTTTCAAATCCATTTCACTTANATCTTGATGANGTGATTGATATAACGCTGTATGATTGGTACATGAATGTGAATTTTCAGTCATTCGCTGCTGAATTCTATCAGTTTTGAAGTAAAGTCTNCATCT]
[+] EMBL CD181447 [ GAAGTCTGGAAGAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCTACCACAATTATCACGAGATTCTAATAGTGGTGCTCCTCCCTTGCCGACGAGCAGTTTTAAAATACCAAGATGTCCCGCATATGCTGCTCGATGTGCAGGTGTAGCCCCGTCATTCTTTGTCTTTGCGAA ]
consensusID : consensus_7240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACAGAGTAATACTTTAGTAATGAAAAAAATTCTAAAAATTAAGTCTGTGATATGGGAATGAACATATGGTGATGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAAAAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATGACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCCTACACAATTA]
[+] EMBL AI395234 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACAGAGTAATACTTTAGTAATGAAAAAAATTCTAAAAATTAAGTCTGTGATATGGGAATGAACATATGGTGATGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAAAAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATGACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCTAGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCCTCGGTACGCGTGGTGCAAGCAGTTCCCTACACAATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7240#0 ATTGTACCAAAATATAATATTGAATAAAGTCAACCAACCATCTTGTTGAAAATGATTAAC 60
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 GTTACCACCTTGCTGACAATATTATAGGTCAAATAGAATTTAAACCACAGTGTCAAGTAT 120
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 ATAGCTTGGACTAGAGTAAATTGTTNTATGCTGAAATATTCTGTGCTAAAGTACCACTGA 180
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 GAAATATAACTACATAAAAAGACATTACTATCTAGTAATTAAGTAGCAATACAAATACCA 240
consensus_7240#1 --------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTT 28
* * ** * * *
consensus_7240#0 TTCACAGAGTAATACTTTAGTAATGAAAAAAATTCTAAAAATTAAGTCTGTGATATGGGA 300
consensus_7240#1 TTCACAGAGTAATACTTTAGTAATGAAAAAAATTCTAAAAATTAAGTCTGTGATATGGGA 88
************************************************************
consensus_7240#0 ATGAACATATGGTGATGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAA 360
consensus_7240#1 ATGAACATATGGTGATGAACATACACAGTAGTTATAAGCAAAGTCAGGTTTGGATATAAA 148
************************************************************
consensus_7240#0 AAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATG 420
consensus_7240#1 AAAATGGAAAAGCCTTAATGTGAGTTATTTATCTACCATAGATCATACATTTAATTCATG 208
************************************************************
consensus_7240#0 ACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCT 480
consensus_7240#1 ACAGTGCATTTCATTAGCTGACTGACCAACGAAGTCTGGAAGAAGACCATTGTTGTCTCT 268
************************************************************
consensus_7240#0 AGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCC 540
consensus_7240#1 AGTACTAGACAGATTAGGATAGCTCTCCAATAACCAATCTATTATATTTTTATGCTTCCC 328
************************************************************
consensus_7240#0 TCGGTACGCGTGGTGCAAGCAGTTCCTACCACAATTATCACGAGATTCTAGTAGTGGTGC 600
consensus_7240#1 TCGGTACGCGTGGTGCAAGCAGTTCCCTACACAATTA----------------------- 365
************************** ********
consensus_7240#0 TCCTCCCTTGCCGACGAGCAGTTTTAAAATACCAAGATGTCCCGCATATGCTGCTCGATG 660
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 TGCAGGTGTAGCCCCGTCATTCTTTGTCTTTGCGAAACTATCAGCCCCAGCTTCTAATAA 720
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 TACTTTGCAAACATCTTCATGATTATTTCTAGCAGCATAATGCAGAGCTGTATACCCATA 780
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 ACTGTCTGGTATGTTAACATTAATATGTTTATTTAATAATTTCCGGACGCGATCAATATC 840
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 ACCACGTGTGGAAGCACCCANATCCCTCTTTCAAATCCATTTCACTTANATCTTGATGAN 900
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 GTGATTGATATAACGCTGTATGATTGGTACATGAATGTGAATTTTCAGTCATTCGCTGCT 960
consensus_7240#1 ------------------------------------------------------------
consensus_7240#0 GAATTCTATCAGTTTTGAAGTAAAGTCTNCATCT 994
consensus_7240#1 ----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||