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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[CGATAATCTTCCCGAACCTGGATCAAGTATAACGGCTTATTGTTCTGACACCCTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAGCCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTATGGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAACGTACATTATCAGTCGACTTCCTAGATATGATTAATTAGTTTTTTCACTGTAGTTTGGGATAAGCCACATGTTGTTGTAATGGATCATACAATCATCAGCCCTCCCTATAAGGAAAACAATGTGTCTTGTAATTCAGACGCACAACAGGCCAAATCACAAACAGATTATGTACAGAGAGTGGTTAGTCGGTTTTATCAAGAACGTGTCACGGATAATAGGAGTGGAAATTGACCTAACTCCCCTTTCAGAAAATATACCATA]
[+] EMBL CD081951 [CGATAATCTTCCCGAACCTGGATCAAGTATAACGGCTTATTGTTCTGACACCCTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAGCCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTATGGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAACGTACATTATCAGTCGACTTCCTAGATATGATTAATTAGTTTTTTCACTGTAGTTTGGGATAAGCCACATGTTGTTGTAATGGATCATACAATCATCAGCCCTCCCTATAAGGAAAACAATGTGTCTTGTAATTCAGACGCACAACAGGCCAAATCACAAACAGATTATGTACAGAGAGTGGTTAGTCGGTTTTATCAAGAACGTGTCACGGATAATAGGAGTGGAAATTGACCTAACTCCCCTTTCAGAAAATATACCATA]
consensusID : consensus_7260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 501 fasta sequence
[ATGACAGTCGATAATCTTCCCGAACCTGGATCAAGTA-TAACGGCTTA-TTGTTCTGACACCCTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAGCCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTATGGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAACTTTTTTCACTGTAGTTTGGGATAAGCCACATGTTGTTGTAATGGATCATACAATCATCAGCCCTCCCTATAAGGAAAACAATGTGTCTTGTAATTCAGACGCACAACAGGCCAAATCACAAACAGATTATGTACAGAGAGTGGTTAGTCGG]
[+] EMBL CD191713 [ATGACAGTCGATAATCTTCCCGAACCTGGATCAAGTA TAACGGCTTA TTGTTCTGACACCCTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAGCCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTATGGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAACTTTTTTCACTGTAGTTTGGGATAAGCCACATGTTGTTGTAATGGATCATACAATCATCAGCCCTCCCTATAAGGAAAACAATGTGTCTTGTAATTCAGACGCACAACAGGCCAAATCACAAACAGATTATGTACAGAGAGTGGTTAGTCGG]
[-] EMBL CD135597 [ GATAATCTTCCCGAACCTGGATCAAGTA TAACGGCTTA TTGTTCTGACACCCTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAGCCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTT ]
[+] EMBL SMAA25611 [ ataAATCTTCCCGAACCTGGATCAAGTATTAACGGCTTATTTGTTCTGACACCCTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAGGCTGATCGTTCTGCAGAAGCCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTATGGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAACTTTTTTCACTGTAGTTTGGGATAAGCCACATGTTGTTGTA ]
[+] EMBL CD092564 [ ACTTATTCTACGCGCTGATTACCTTAGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAAAAGATAATTGAGCGTATTCGAGTTTACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTATGGCCACGATGTCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7260#0 --------CGATAATCTTCCCGAACCTGGATCAAGTATAACGGCTTATTGTTCTGACACC 52
consensus_7260#1 ATGACAGTCGATAATCTTCCCGAACCTGGATCAAGTATAACGGCTTATTGTTCTGACACC 60
****************************************************
consensus_7260#0 CTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAG 112
consensus_7260#1 CTAATACGAGGAGATGTTCTATGTGTAGATGCATCTAAAAAGCTGATCGTTCTGCAGAAG 120
************************************************************
consensus_7260#0 CCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTT 172
consensus_7260#1 CCCTCAAGTATCGGCAGGCCTGACGAGTGTGACATACTTATTCTACGCGCTGATTACCTT 180
************************************************************
consensus_7260#0 AGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAA 232
consensus_7260#1 AGAGATCTAAAGAGCACCAAAGAAGGGTCTCCACCAGCCTGTCCTGAACTAAATATTGAA 240
************************************************************
consensus_7260#0 AAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTAT 292
consensus_7260#1 AAGATAATTGAGCGTATTCGAGTTAACGAACGTATTCAAAAGGAAAAGCTGAAGTTTTAT 300
************************************************************
consensus_7260#0 GGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAACGTACATTATC 352
consensus_7260#1 GGCCACGATGTCCCCGTGGATGCTCGTAAACTTGCCGAATACCTGGAAAC---------- 350
**************************************************
consensus_7260#0 AGTCGACTTCCTAGATATGATTAATTAGTTTTTTCACTGTAGTTTGGGATAAGCCACATG 412
consensus_7260#1 ----------------------------TTTTTTCACTGTAGTTTGGGATAAGCCACATG 382
********************************
consensus_7260#0 TTGTTGTAATGGATCATACAATCATCAGCCCTCCCTATAAGGAAAACAATGTGTCTTGTA 472
consensus_7260#1 TTGTTGTAATGGATCATACAATCATCAGCCCTCCCTATAAGGAAAACAATGTGTCTTGTA 442
************************************************************
consensus_7260#0 ATTCAGACGCACAACAGGCCAAATCACAAACAGATTATGTACAGAGAGTGGTTAGTCGGT 532
consensus_7260#1 ATTCAGACGCACAACAGGCCAAATCACAAACAGATTATGTACAGAGAGTGGTTAGTCGG- 501
***********************************************************
consensus_7260#0 TTTATCAAGAACGTGTCACGGATAATAGGAGTGGAAATTGACCTAACTCCCCTTTCAGAA 592
consensus_7260#1 ------------------------------------------------------------
consensus_7260#0 AATATACCATA 603
consensus_7260#1 -----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||