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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 901 fasta sequence
[AGCATTTATATATTTTATATGGCAGTTGACATTACATATACACATGTAAAAGAAAATCTATGGTTTAAATACACGGTTCCATGAAATTATACAAATCTGCATACTGACAGATAATAAGTAGAAATCTTTATGTAGATAATGATGGTAACAATAATGGTAATATTAGTAATGGTTCCAAATCACAGACTGATCAAGTTTTCTCTCCATTATTTTGTTGGGGAACAAATATGATCAACAGTAATATAGCTTTACCACTATTAATAGTAGTCTCGTCGAGGATTGTTCAAAGGATTCGGTCGAAACCGATAAGCTAACATCATACGTTTCCTATATGCATCGTACTCATCATCTTCTTTTACTAATTTGGAAGGACGATCAATTCCTAGTCCTACACCATCAACATGGACATTCCCCTTATTGACTGGATTAACAATACCTTGACCATCAATGCCAAGTCCTTCACCTTCTTTCCAACCCATCTTCTCTAA-CATTTGAAAACCAACATTTTCACAAGTTAACTTGAACTGTTTGTATTCAGAAAAATCCGGTTCCCGACCTTCTTTCAATGCTCGGAAAGTTTCCATGAAACGCTCTAATTCATCCGGTGGTAGAAAGTCCCCAATATGATGCTTTCCGTGACCCATTTCAGTTAATTTTTGAGCCCATTCTCGGGTTGCCTCCATCTCCGCTTGTCTTAATTTATGCTCCCATGTTCCGTTTTCACAGTCCTCATCGGAAATCATACTCATATTTGATAACTAAACCATCCTTTGTAATTTTTGTTTTATTTCCATAATTTACACCCTTAATTCGATTCATAAGTTCTTCCTCTTTAGACTTTGATCGTTTTTGTGCTAAAATAAACTCTTGCAAGAAGCCGGTTTTTCAGTAATAGAATTNC]
[+] EMBL CD076668 [AGCATTTATATATTTTATATGGCAGTTGACATTACATATACACATGTAAAAGAAAATCTATGGTTTAAATACACGGTTCCATGAAATTATACAAATCTGCATACTGACAGATAATAAGTAGAAATCTTTATGTAGATAATGATGGTAACAATAATGGTAATATTAGTAATGGTTCCAAATCACAGACTGATCAAGTTTTCTCTCCATTATTTTGTTGGGGAACAAATATGATCAACAGTAATATAGCTTTACCACTATTAATAGTAGTCTCGTCGAGGATTGTTCAAAGGATTCGGTCGAAACCGATAAGCTAACATCATACGTTTCCTATATGCATCGTACTCATCATCTTCTTTTACTAATTTGGAAGGACGATCAATTCCTAGTCCTACACCATCAACATGGACATTCCCCTTATTGACTGGATTAACAATACCTTGACCATCAATGCCAAGTCCTTCACCTTCTTTCCAACCCATCTTCTCTAA CATTTGAAAACCAACATTTTCACAAGTTAACTTGAACTGTTTGTATTCAGAAAAATCCGGTTCCCGACCTTCTTTCAATGCTCGGAAAGT ]
[-] EMBL CD130589 [ TTGGAAGGACGATCAATTCCTAGTCCTACACCATCAACATGGACATTCACCTTATTGACTGGATTAACAATACGTTGACCATCAATGCCAAGTCCTTCACCTTCTTTCCAACCCATCTTCTCTAACCATTTGAAAACCAACATTTTCACAAGTTAACTTGAACTGTTTGTATTCAGAAAAATCCGGTTCCCGACCTTCTTTCAATGCTCGGAAAGTTTCCATGAAACGCTCTAATTCATCCGGTGGTAGAAAGTCCCCAATATGATGCTTTCCGTGACCCATTTCAGTTAATTTTTGAGCCCATTCTCGGGTTGCCTCCATCTCCGCTTGTCTTAATTTATGCTCCCATGTTCCGTTTTCACAGTCCTCATCGGAAATCATACTCATATTTGATAACTAAACCATCCTTTGTAATTTTTGTTTTATTTCCATAATTTACACCCTTAATTCGATTCATAAGTTCTTCCTCTTTAGACTTTGATCGTTTTTGTGCTAAAATAAACTCTTGCAAGAAGCCGGTTTTTCAGTAATAGAATTNC]
consensusID : consensus_7271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 861 fasta sequence
[CAATGCTCGGAAAGTTTCCAAGAAACGCTCTAATTCATCCGGTGGTAGAAAGTCCCCAATATGATGCTTTCCGTGACCCATTTCAGTTAATTTTTGAGCCCATTCTCGGGTTGCCTCCATCTCCGCTTGTCTTAATTTATGCTCCCATGTTCCGTTTTCACAGTCCTCATCGGAATCATACTCATATTTGATAACTAAACCATCCTTTGTAATTTTTGTTTTATTTCCATAATTTACACCCTTAATTCGATTCATAAGTTCTTCAATATTTAGACTTTGATCGTTTTTGTGCTAAAATAAACTCTTGCATAGCTTGAAGTTCCTTTTGATAACGTATCTGTTCAGCTTGCTCGGGTGTAAGTACAACACCACCAGTGAACTGATTTGGATTTGAAGTAGTTCCTTGAGTTTTTGCAGCGGCTGCGGCAGCTTTTGCTAGTGCAATTGCAGAAGCCAAAGACCCATCTGGGAAATCTTTTACTAATCCATTTATGTTAGGTTCATTGGCTTTTTCGTCCTCATGTGG-GCCTCGNGCTTTTGGTAGGGATGAATTCATCATTTTCCGACTTGCAAATATCTGGAGTTTCGGATTTGGCTAAACTACCGAGTGTCTTTTGTTTACGAACATCAGCCAATCTTTTTCTAAAAAATTTGTATTCATTAGTCTCTGGAAGGGTCAGGAACCAATACTGTATGCTATCCTCAAACTTCTTTATTTATGCTTCGCAGAGACTGTGGGACATACCAGAAACACGTAGGACCAACGATTCGATTGCCACCAAAACCTTGGAATCATACGGGAATAACTGGAAATATGGCACTGTTTCACTCTCCGCCTCGTGCCGATTCTGGCCTCGAAGG]
[-] EMBL CD083094 [CAATGCTCGGAAAGTTTCCAAGAAACGCTCTAATTCATCCGGTGGTAGAAAGTCCCCAATATGATGCTTTCCGTGACCCATTTCAGTTAATTTTTGAGCCCATTCTCGGGTTGCCTCCATCTCCGCTTGTCTTAATTTATGCTCCCATGTTCCGTTTTCACAGTCCTCATCGGAATCATACTCATATTTGATAACTAAACCATCCTTTGTAATTTTTGTTTTATTTCCATAATTTACACCCTTAATTCGATTCATAAGTTCTTCAATATTTAGACTTTGATCGTTTTTGTGCTAAAATAAACTCTTGCATAGCTTGAAGTTCCTTTTGATAACGTATCTGTTCAGCTTGCTCGGGTGTAAGTACAACACCACCAGTGAACTGATTTGGATTTGAAGTAGTTCCTTGAGTTTTTGCAGCGGCTGCGGCAGCTTTTGCTAGTGCAATTGCAGAAGCCAAAGACCCATCTGGGAAATCTTTTACTAATCCATTTATGTTAGGTTCATTGGCTTTTTCGTCCTCATGTGG GCCTCGNG ]
[-] EMBL CD083968 [ GTAGTTCCTTGAGTTTTTGCAGCGGCTGCGGCAGCTTTTGCTAGTGCAATTGCAGAAGCCAAAGACCCATCTGGGAAATCTTTTACTAATCCATTTATGTTAGGTTCATTGGCTTTTTCGTCC CATCTGGAGCGACG CCTTTTGGTAGGGATGAATTCATCATTTTCCGACTTGCAAATATCTGGAGTTTCGGATTTGGCTAAACTACCGAGTGTCTTTTGTTTACGAACATCAGCCAATCTTTTTCTAAAAAATTTGTATTCATTAGTCTCTGGAAGGGTCAGGAACCAATACTGTATGCTATCCTCAAACTTCTTTATTTATGCTTCGCAGAGACTGTGGGACATACCAGAAACACGTAGGACCAACGATTCGATTGCCACCAAAACCTTGGAATCATACGGGAATAACTGGAAATATGGCACTGTTTCACTCTCCGCCTCGTGCCGATTCTGGCCTCGAAGG]
consensusID : consensus_7271#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence
[AGCCCGGTACCCTGGCTGGTGGAAATCACGAGGCTATGGCCCTGACGGATGGGTCCGCACGGCGAAGTTGAGGATGGCAACTAAGGAAATCGTCTGAGATGTATGAAACCTGCGCTTACTTGGAGAAGCCAGTTTTTAACTCTGACGACTCAGGACAATGGACGTGATGGGCTTTTCGGGAGGAGTGTAAGATGTGTTCGATAAACGAATCCACCAATGGTTAGCGTTAATCGCTCACCTAACTACTAGATGGAAATACTTTTAACTTCCATGATTCTGAGAGTCAACCAATCAAGCAAAGGAAAAGTAAATTTACCTGGAAATTCCTTTATTTCGATTTCATGTAAAAGTTTTTAAGATTTGCTTGGTAAATAGACTAAGATGCTTGACTTTTGTCTCTGGATTGGTGTTTTATCTACTTACTGATACAATGTGCTTGCTAATTTTAGGAACTACTTCAAATCCAAATCAGTTCACTGGTGGTGTTGCACTTACACCCGAGCAAGCTGAACAGATACGTTATCAAAAGGAAGTACGTTGTCAACTGCAGCATGTTTGTATCAGTTCTCTAAGATATAATGTATTATTCTTGATGGTCAAAGCTGTTTTTATTAAGGTTTATGGTGTTGGTAAACCCGCAACTTAATTTATCCTCAAATAATATAA]
[+] EMBL CD167905 [AGCCCGGTACCCTGGCTGGTGGAAATCACGAGGCTATGGCCCTGACGGATGGGTCCGCACGGCGAAGTTGAGGATGGCAACTAAGGAAATCGTCTGAGATGTATGAAACCTGCGCTTACTTGGAGAAGCCAGTTTTTAACTCTGACGACTCAGGACAATGGACGTGATGGGCTTTTCGGGAGGAGTGTAAGATGTGTTCGATAAACGAATCCACCAATGGTTAGCGTTAATCGCTCACCTAACTACTAGATGGAAATACTTTTAACTTCCATGATTCTGAGAGTCAACCAATCAAGCAAAGGAAAAGTAAATTTACCTGGAAATTCCTTTATTTCGATTTCATGTAAAAGTTTTTAAGATTTGCTTGGTAAATAGACTAAGATGCTTGACTTTTGTCTCTGGATTGGTGTTTTATCTACTTACTGATACAATGTGCTTGCTAATTTTAGGAACTACTTCAAATCCAAATCAGTTCACTGGTGGTGTTGCACTTACACCCGAGCAAGCTGAACAGATACGTTATCAAAAGGAAGTACGTTGTCAACTGCAGCATGTTTGTATCAGTTCTCTAAGATATAATGTATTATTCTTGATGGTCAAAGCTGTTTTTATTAAGGTTTATGGTGTTGGTAAACCCGCAACTTAATTTATCCTCAAATAATATAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7271#0 AGCATTTATATATTTTATATGGCAGTTGACATTACATATACACATGTAAAAGAAAATCTA 60
consensus_7271#1 ---------------------------------------------------------CAA 3
consensus_7271#2 ------------------------------------------------------------
consensus_7271#0 TGGTTTAAATACACGGTTCCATGAAATTATACAAATCTGCATACTGACAGATAATA---A 117
consensus_7271#1 TGCTCGGAAAGT----TTCCAAGAAAC-GCTCTAATTCATCCGGTGGTAGAAAGTCCCCA 58
consensus_7271#2 ------------------------------------------------------------
consensus_7271#0 GTAGAAATCTTTATGTAGATAATGATGGT-AACAATAATGGTAATATTAGTAATGGTTCC 176
consensus_7271#1 ATATGATGCTTTCCGTGACCCATTTCAGTTAATTTTTGAGCCCATTCTCGGGTTGCCTCC 118
consensus_7271#2 ------------------------------------------------------------
consensus_7271#0 AAATCACAGACTGATCAAGTTTTCTCTCCATTATTTTGTTGGGGAACAAATATGATCAAC 236
consensus_7271#1 --ATCTCCGCTTGTCTTAATTTATGCTCCCATGTTCCGTTTTC--ACAGTCCTCATCGG- 173
consensus_7271#2 ------------------------------------------------------------
consensus_7271#0 AGTAATATAGCTTTACCACTATTAATAGTAGTCTCGTCGAGGATTGTTCAAAGGATTCGG 296
consensus_7271#1 AATCATACTCATATTTGATAACTAA-ACCATCCTTTGTAATTTTTGTTTTATTTCCATAA 232
consensus_7271#2 ------AGCCCGGTACCCTGGCTGGTGGAAATCACGA-GGCTATGGCCCTGACGGATGGG 53
* * * * * * *
consensus_7271#0 TCGAAACCGATAAGCTAACATCATACGTTTCCTATATGCATCGTACTCATCATCTTCTTT 356
consensus_7271#1 TTTACACCCTTAATTCGAT-TCATAAGTTCTTCA-ATAT-TTAGACTTTGATCGTTTTTG 289
consensus_7271#2 TCCGCACGGCGAAGTTGAGGATGGCAACTAAGGAAAT-CGTCTGAGATGTATGAAACCTG 112
* ** ** * * * ** * * *
consensus_7271#0 TACTAATTTGGAAGGACGATCAATTCCTAGTCCTACACCATCAACATGGACAT--TCCCC 414
consensus_7271#1 TGCTAAAATAAACTCTTGCATAGCTTGAAGTTCCTTTTGAT-AACGTATCTGT--TCAGC 346
consensus_7271#2 CGCTTACTTGGAGAAGCCAGTTTTTAACTCTGACGACTCAGGACAATGGACGTGATGGGC 172
** * * * * * * * * * * *
consensus_7271#0 TTATT-GACTGGATTAACAATACC-----TTGACCA-----TCAATGCCAAGTCCTTCAC 463
consensus_7271#1 TTGCTCGGGTGTAAGTACAACACCACCAGTGAACTGATT--TGGATTTGAAGTAGTTCCT 404
consensus_7271#2 TTTTCGGGAGGAGTGTAAGATGTGTTCGATAAACGAATCCACCAATGGTTAG-CGTTAAT 231
** * * * * * ** ** ** **
consensus_7271#0 CTTCTTTCCAACCCATCTTCTCTAACATTTGAAAACCA-ACATTTTCACAAGTTAAC--- 519
consensus_7271#1 TGAGTTTTTGCAGCGGCTGCGGCAGCTTTTGCTAGT---GCAATTGCAGAAGCCAAAGA- 460
consensus_7271#2 CGCTCACCTAACTACTAGATGGAAATACTTTTAACTTCCATGATTCTGAGAGTCAACCAA 291
* ** * ** ** **
consensus_7271#0 TTGAACTGTTTGTATTCAGAAAAATCCGGTTCCCGACCTTCTTTCAATGCTCGGAAAGTT 579
consensus_7271#1 CCCATCTGGGAAATCTTTTACTAATCCATTTAT---GTTAGGTTCATTGGCTTTTTCGTC 517
consensus_7271#2 TCAAGCAAAGGAAAAGTAAATTTACCTGGAAATTC-CTTTATTTCGATTTCATGTAAAAG 350
* * * * * * *** *
consensus_7271#0 TCCATGAAACGCTCTAATTCATCCGGTGGTAGAAAGTCCCCAATATGATGCTTTCCGTGA 639
consensus_7271#1 CTCATGTGGGCCTCGNGCT--TTTGGTAGGGATGAATTCATCATTTTCCGACTTGCA-AA 574
consensus_7271#2 TTTTTAAGATTTGCTTGGT----AAATAGACTAAGATGCTTGACTTT-TGTCTCTGGATT 405
* * * * * * * * * * *
consensus_7271#0 CCCATTTCAGTTAATTTTTGAGCCCATTCTCGGGTTGCCTCCATCTCCGCTTGTC--TTA 697
consensus_7271#1 TATCTGGAGTTTCGGATTTGGCTAAACTACCGAGTGTCTTTTGTTTACGAACATCAGCCA 634
consensus_7271#2 GGTGTTTTATCTACTTACTGATACAATGTGCTTGCTAATTTTAGGAACTACTTCAAATCC 465
* * ** * * * * *
consensus_7271#0 ATTTATGCTCCCATGTTCCGTTTTCACAGTCCTCATCGGAAATCAT--ACTCATATTTGA 755
consensus_7271#1 ATCTTTTTCTAAAAAATTTGTATTCATTAGTCTCTGGAAGGGTCAGGAACCAATACTGTA 694
consensus_7271#2 AAATCAGTTCACTGGTGGTGT-TGCACTTACACCCGAGCAAGCTGA--ACAGATACGTTA 522
* * ** * ** * ** *** *
consensus_7271#0 TAACTAAACCATCCTTTGTAATTTTTGTTTTATTT---CCATAATTTACACCCTTAATTC 812
consensus_7271#1 TGCTATCCTCAAACTTCTTTATTTATGCTTCGCAGAGACTGTGGGACATACCAGAAACAC 754
consensus_7271#2 TCAAAAGGAAGTACGTTGTCAACTGCAGCATGTTTGTATCAGTTCTCTAAGATATAATGT 582
* * * * * * * **
consensus_7271#0 G---ATTCATAAGTTC---TTCCTCTTTAGACTTTGATCGTTTTTGTGCTAAAATAAACT 866
consensus_7271#1 GTAGGACCAACGATTCGATTGCCACCAAAACCTTGGAATCATACGGGAATAACTGGAAAT 814
consensus_7271#2 ATTATTCTTGATGGTCAAAGCTGTTTTTA----TTAAGGTTTATGGTGTTGG--TAAACC 636
** * * * * * * **
consensus_7271#0 CTTGCAAGAAGCCGGTTTTTCAGTAATAGAATTNC------------ 901
consensus_7271#1 ATGGCACTGTTTCACTCTCCGCCTCGTGCCGATTCTGGCCTCGAAGG 861
consensus_7271#2 CGCA-ACTTAATTTATCCTCAAATAATATAA---------------- 666
* * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||