cluster # 7274

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Schistosoma mansoni
cluster # 7274 cluster # 7274 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7274#0 length = 785 sequences # 2

consensus_7274#1 length = 339 sequences # 2
consensus_7274#2 length = 224 sequences # 1

consensusID : consensus_7274#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 785
fasta sequence

                              [GCGCTTGTTCTTCCTTCCAAATCTTCTGGAATAAAAGGCGAAGTATGTTTGCAGTTAGTTCAATGTCTGACTTCAGTGCTTCAGTTGGCATATCGTCAGGTTCTGCCGCTTTCTCTCCCTTGATTTGCCTGAAGGCCATCTTGATTTCTTCGACCGTTGGTGGAGTGACATCCGTAGGAAGGCCAGTGTATGCTGCTTCGATGTCCGGTGTATTCAATAGGGCTGGTCTATCCAGCAGTTACTCGAATTATTCTACCTATCGTTTCTTCTGTTCTTGAACCTCCGTGATTGTCTTTTCTTCTTTGCACTTGACTGATCTCTCTGGTTTACAATATTTCCCTGTTAGTTTCTTCGTCGAGTTGTATATCTGTCACATATTCCCTTCTTTTGAAGCTTTTTACGCCGTCGTTGCTGGTTCTCCCATGTATTTCTGTTTGTCAGCTTCAATGCTCCTCTTTACTTGCTTCTTTGCTTCTGCGTAGTCTGCTTGCGCCTTGACTTTCTCTGCTCGTGTTTGACTGTTGTTAATTGCTATTTTCTTGTTCTTCCTTTCTTCAATTTTGTCCAGGATTCCCATAGGGATGCATTCCTTATGATCATGTTACTTAGGACGCAGAACCTCCTGATACGTTGAAATTAATGCTTCTTTGATCGCTTCCCAGTTACCCTACATCGTATTTTCTTGTTCGTTCAGTAGATCCTGTAGAGCCTGGAACCTGTTGTTGAGCGTTTTTAGCGTTTTTTGGTTAGCGTTTTTTTAAGAGTTGATTTTCTACGGGATGGGG]

[-] EMBL CD111577             [GCGCTTGTTCTTCCTTCCAAATCTTCTGGAATAAAAGGCGAAGTATGTTTGCAGTTAGTTCAATGTCTGACTTCAGTGCTTCAGTTGGCATATCGTCAGGTTCTGCCGCTTTCTCTCCCTTGATTTGCCTGAAGGCCATCTTGATTTCTTCGACCGTTGGTGGAGTGACATCCGTAGGAAGGCCAGTGTATGCTGCTTCGATGTCCGGTGTATTCAATAGGGCTGGTCTATCCAGCAGTTACTCGAATTATTCTACCTATCGTTTCTTCTGTTCTTGAACCTCCGTGATTGTCTTTTCTTCTTTGCACTTGACTGATCTCTCTGGTTTACAATATTTCCCTGTTAGTTTCTTCGTCGAGTTGTATATCTGTCACATATTCCCTTCTTTTGAAGC                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD141800             [                                                                                                                                                                                                                                                                                                        TCTTCTTTGCACTTGACTGATCTCTCTGGTTTACAATATTTCCCTGTTAGTTTCTTCGTCGAGTTGTATATCTGTCACATATTCCCTTCTTTTGAAGCTTTTTACGCCGTCGTTGCTGGTTCTCCCATGTATTTCTGTTTGTCAGCTTCAATGCTCCTCTTTACTTGCTTCTTTGCTTCTGCGTAGTCTGCTTGCGCCTTGACTTTCTCTGCTCGTGTTTGACTGTTGTTAATTGCTATTTTCTTGTTCTTCCTTTCTTCAATTTTGTCCAGGATTCCCATAGGGATGCATTCCTTATGATCATGTTACTTAGGACGCAGAACCTCCTGATACGTTGAAATTAATGCTTCTTTGATCGCTTCCCAGTTACCCTACATCGTATTTTCTTGTTCGTTCAGTAGATCCTGTAGAGCCTGGAACCTGTTGTTGAGCGTTTTTAGCGTTTTTTGGTTAGCGTTTTTTTAAGAGTTGATTTTCTACGGGATGGGG]




>consensus_7274#0
GCGCTTGTTCTTCCTTCCAAATCTTCTGGAATAAAAGGCGAAGTATGTTTGCAGTTAGTT
CAATGTCTGACTTCAGTGCTTCAGTTGGCATATCGTCAGGTTCTGCCGCTTTCTCTCCCT
TGATTTGCCTGAAGGCCATCTTGATTTCTTCGACCGTTGGTGGAGTGACATCCGTAGGAA
GGCCAGTGTATGCTGCTTCGATGTCCGGTGTATTCAATAGGGCTGGTCTATCCAGCAGTT
ACTCGAATTATTCTACCTATCGTTTCTTCTGTTCTTGAACCTCCGTGATTGTCTTTTCTT
CTTTGCACTTGACTGATCTCTCTGGTTTACAATATTTCCCTGTTAGTTTCTTCGTCGAGT
TGTATATCTGTCACATATTCCCTTCTTTTGAAGCTTTTTACGCCGTCGTTGCTGGTTCTC
CCATGTATTTCTGTTTGTCAGCTTCAATGCTCCTCTTTACTTGCTTCTTTGCTTCTGCGT
AGTCTGCTTGCGCCTTGACTTTCTCTGCTCGTGTTTGACTGTTGTTAATTGCTATTTTCT
TGTTCTTCCTTTCTTCAATTTTGTCCAGGATTCCCATAGGGATGCATTCCTTATGATCAT
GTTACTTAGGACGCAGAACCTCCTGATACGTTGAAATTAATGCTTCTTTGATCGCTTCCC
AGTTACCCTACATCGTATTTTCTTGTTCGTTCAGTAGATCCTGTAGAGCCTGGAACCTGT
TGTTGAGCGTTTTTAGCGTTTTTTGGTTAGCGTTTTTTTAAGAGTTGATTTTCTACGGGA
TGGGG

consensusID : consensus_7274#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 339
fasta sequence

                              [ACAGGAGGATTACGTCTTCCCGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCTCTAGTTCCATCACCTTAGCACGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCTGTGAAGAAAGGAATTTATTGGTAGTTTGCAAACTTGTTAGGTCTGAATGCCAACGTTCAACTTCTGCGCCACCGCGCACAGCTCTGCATCGGACTGATTCCAGCTCTTTTATAGTATTTTCCAGCTGACCACGTGTATTTGAAAAGTTGAGTTGTGAGCTCGGAACANAGGCGTTCTTTTGTTTTGAACTCGGCAGACATTTTATCAACC]

[+] EMBL CD146719             [ACAGGAGGATTACGTCTTCCCGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCTCTAGTTCCATCACCTTAGCACGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCTGTGAAGAAAGGAATTTATTGGTAGTTTGCAAACTTGTTAGGTCTGAATGCCAACGTTCAACTTCTGCGCCACCGCGCACAGCTCTGCATCGGACTGATTCCAGCTCTTTTATAGTATTTTCCAGCTGACCACGTGTATTTGAAAAGTTGAGTTGTGAGCTCGGAACANAGGCGTTCTTTTGTTTTGAACTCGGCAGACATT         ]
[+] EMBL CD146708             [                  CCCGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCTCTAGTTCCATCACCTTAGCACGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCTGTGAAGAAAGGAATTTATTGGTAGTTTGCAAACTTGTTAGGTCTGAATGCCAACGTTCAACTTCTGCGCCACCGCGCACAGCTCTGCATCGGACTGATTCCAGCTCTTTTATAGTATTTTCCAGCTGACCACGTGTATTTG AAAGTTGAGTTGTGAGCTCGGAACAAAGGCGTTCTTTTGTTTTGAACTCGGCAGACATTTTATCAACC]




>consensus_7274#1
ACAGGAGGATTACGTCTTCCCGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCT
CTAGTTCCATCACCTTAGCACGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAAT
CGTTTTCCTGTGAAGAAAGGAATTTATTGGTAGTTTGCAAACTTGTTAGGTCTGAATGCC
AACGTTCAACTTCTGCGCCACCGCGCACAGCTCTGCATCGGACTGATTCCAGCTCTTTTA
TAGTATTTTCCAGCTGACCACGTGTATTTGAAAAGTTGAGTTGTGAGCTCGGAACANAGG
CGTTCTTTTGTTTTGAACTCGGCAGACATTTTATCAACC

consensusID : consensus_7274#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [TAGTGATTGGTCTAAACCCCCCTGCTCGGCCATATTGGTTAACAGATCCTCACTTGCTGGACGGCTGGCAATGATCTTTATCGGTTGTCGTCAGTTGCCAAAACGTTTACTTTTTTAAAATTAAAGTGCTAAAAGCAGGCGGACGCCGCTATATATATTGCATGGAATAGGGAAATAAAATCTCGATTTTATAACGTTGGTTTCCCACCTTGAGATAATGATTA]

[+] EMBL CD091325             [TAGTGATTGGTCTAAACCCCCCTGCTCGGCCATATTGGTTAACAGATCCTCACTTGCTGGACGGCTGGCAATGATCTTTATCGGTTGTCGTCAGTTGCCAAAACGTTTACTTTTTTAAAATTAAAGTGCTAAAAGCAGGCGGACGCCGCTATATATATTGCATGGAATAGGGAAATAAAATCTCGATTTTATAACGTTGGTTTCCCACCTTGAGATAATGATTA]




>consensus_7274#2
TAGTGATTGGTCTAAACCCCCCTGCTCGGCCATATTGGTTAACAGATCCTCACTTGCTGG
ACGGCTGGCAATGATCTTTATCGGTTGTCGTCAGTTGCCAAAACGTTTACTTTTTTAAAA
TTAAAGTGCTAAAAGCAGGCGGACGCCGCTATATATATTGCATGGAATAGGGAAATAAAA
TCTCGATTTTATAACGTTGGTTTCCCACCTTGAGATAATGATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7274#1      ------------------------------------------------------------
consensus_7274#2      ------------------------------------------------------------
consensus_7274#0      GCGCTTGTTCTTCCTTCCAAATCTTCTGGAATAAAAGGCGAAGTATGTTTGCAGTTAGTT 60
                                                                                  

consensus_7274#1      ------------------------------------------------------------
consensus_7274#2      ------------------------------------------------------------
consensus_7274#0      CAATGTCTGACTTCAGTGCTTCAGTTGGCATATCGTCAGGTTCTGCCGCTTTCTCTCCCT 120
                                                                                  

consensus_7274#1      ------------------------------------------------------------
consensus_7274#2      ------------------------------------------------------------
consensus_7274#0      TGATTTGCCTGAAGGCCATCTTGATTTCTTCGACCGTTGGTGGAGTGACATCCGTAGGAA 180
                                                                                  

consensus_7274#1      ------------------------------------------------------------
consensus_7274#2      ------------------------------------------------------------
consensus_7274#0      GGCCAGTGTATGCTGCTTCGATGTCCGGTGTATTCAATAGGGCTGGTCTATCCAGCAGTT 240
                                                                                  

consensus_7274#1      ------------------------------------------------------------
consensus_7274#2      ------------------------------------------------------------
consensus_7274#0      ACTCGAATTATTCTACCTATCGTTTCTTCTGTTCTTGAACCTCCGTGATTGTCTTTTCTT 300
                                                                                  

consensus_7274#1      ------------------------------------------------------------
consensus_7274#2      ------------------------------------------------------------
consensus_7274#0      CTTTGCACTTGACTGATCTCTCTGGTTTACAATATTTCCCTGTTAGTTTCTTCGTCGAGT 360
                                                                                  

consensus_7274#1      ----------------------------ACAGGAGGATTACGTCTTC-CCGATAAGTCAG 31
consensus_7274#2      ---------------------------------------------------------TAG 3
consensus_7274#0      TGTATATCTGTCACATATTCCCTTCTTTTGAAGCTTTTTACGCCGTCGTTGCTGGTTCTC 420
                                                                                  

consensus_7274#1      AAGTTGAT-TAAGCTCGTTGACTT-GGCTCTCTAGTTCCATC-ACCTTAGCACGCAGAGT 88
consensus_7274#2      TGATTGGTCTAAACCCCCCTGCTC-GGCCATATTGGTTAACAGATCCTCACTTGCTGGAC 62
consensus_7274#0      CCATGTATTTCTGTTTGTCAGCTTCAATGCTCCTCTTTACTTGCTTCTTTGCTTCTGCGT 480
                         *   * *           **       *     *          *      * *   

consensus_7274#1      GGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCTGTGAAGAAAGGAATTTATT 148
consensus_7274#2      GGCTGG---------CAATGATCTTTATCGGTTGTCGTCAGTTGCCAAAACG--TTTACT 111
consensus_7274#0      AGTCTGCTTGCGCCTTGACTTTCTCTGCTCGTGTTTGACTGTTGTTAATTGCTATTTTCT 540
                       *   *           *   **  *     *  *   *   **   *      ***  *

consensus_7274#1      GGTAGTT------TGCAAACTTGTT----AGGTCTGAATGCCAACGTTC------AACTT 192
consensus_7274#2      -----TT------TTTAAAATTAA-----AGTGCTAAAAGCAGGCGGAC------GCCGC 149
consensus_7274#0      TGTTCTTCCTTTCTTCAATTTTGTCCAGGATTCCCATAGGGATGCATTCCTTATGATCAT 600
                           **      *  **  **       *   *   * *    *   *        *  

consensus_7274#1      CTGCGCCACCGCGCACAGCTCTGCATCGGACTGATTCCAGCTCTTTTATAGTA-TTTTCC 251
consensus_7274#2      TATATATATTGCATGGAATAGGGAAATAAA---ATCTCGATTTTATAACGTTGGTTTCCC 206
consensus_7274#0      GTTACTTAGGACGCAGAACCTCCTGATACGTTGAAATTAATGCTTCTTTGATCGCTTCCC 660
                             *   *    *                *         *       *   ** **

consensus_7274#1      AGCTGACC-ACGT-GTATTTGAAAAGTTGAGTTGT-GAGCTCGGAACANAGGCGTTCTTT 308
consensus_7274#2      ACCTTGAG-ATAA-TGATTA---------------------------------------- 224
consensus_7274#0      AGTTACCCTACATCGTATTTTCTTGTTCGTTCAGTAGATCCTGTAGAGCCTGGAACCTGT 720
                      *  *     *      ***                                         

consensus_7274#1      TGTTTTGAACTCGGCAGACATTTTATCAACC----------------------------- 339
consensus_7274#2      ------------------------------------------------------------
consensus_7274#0      TGTTGAGCGTTTTTAGCGTTTTTTGGTTAGCGTTTTTTTAAGAGTTGATTTTCTACGGGA 780
                                                                                  

consensus_7274#1      -----
consensus_7274#2      -----
consensus_7274#0      TGGGG 785