cluster # 7277

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Schistosoma mansoni
cluster # 7277 cluster # 7277 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7277#0 length = 915 sequences # 3

consensus_7277#1 length = 367 sequences # 1
consensus_7277#2 length = 314 sequences # 1

consensusID : consensus_7277#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 915
fasta sequence

                              [AATTCGGCACGCAGGGAAAAAAATCAAAAAGATCAATAAATCAATCAATCAATAAATATTTATTTACAAAATTAATCAATTAATTAAAACAATCAAATTATAATTAACTTGAATAAAGTTGAATACCCAAAATATTCTGTTATGCGAATAACCATAATTAATTCTTATTCTAATCAAAAGAAGAAAGAAACACGATAACAAGTCAACATGCCTATACCAAGTATTCATGTAAATTCGATTGAAGATACTGAAAATGATGACAGACGAAATAAGAAACCTTCCATACCAATACTACGAGTAGTTAGTGACGATATGGATGGACGTGAAAATGATGTTAATAGTGATGACGATGATGATGTAATGACAGCTGAAGAGGAAGCCGCTATCGCGCGTCGATTTCTTGGTGGAAACGACCATACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAAGAACCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAGGCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACATCAAGAAAAATTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCAGAGCGTCCAAAAGACATTCAAAAGTCGCTGAAGAACAAGAGCCCAGTAAAAATAATCAAGTAAGGCGAGTGGATTATCGAAAACAAGGTCTTGGAGGTTTGAGTAAAGAGCGCAGAAAAAAATTGAAGGAAATGATCTTGCAAAAGGCAAAAAATGAACTTCTTGAAGAGAGAAGAAAAGAACTTCGAAACCGTGAAGATCACATCAAGAAACAAGCTCCTCCGTTCGACATTGATGGTTTAAATCAAATGCAACTTGAAGAAAAGGTGAAGTCGTGGTACGAACAC]

[+] EMBL CD081780             [AATTCGGCACGCAGGGAAAAAAATCAAAAAGATCAATAAATCAATCAATCAATAAATATTTATTTACAAAATTAATCAATTAATTAAAACAATCAAATTATAATTAACTTGAATAAAGTTGAATACCCAAAATATTCTGTTATGCGAATAACCATAATTAATTCTTATTCTAATCAAAAGAAGAAAGAAACACGATAACAAGTCAACATGCCTATACCAAGTATTCATGTAAATTCGATTGAAGATACTGAAAATGATGACAGACGAAATAAGAAACCTTCCATACCAATACTACGAGTAGTTAGTGACGATATGGATGGACGTGAAAATGATGTTAATAGTGATGACGATGATGATGTAATGACAGCTGAAGAGGAAGCCGCTATCGCGCGTCGATTTCTTGGTGGAAACGACCATACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAAGAACCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAGGCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACATCAAGAAAAATTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCAGAGCGTCCAAAAGACATTCAAAAGTCGCTGAAGAACAAGAGCCCAGTAAAAATAATCAAGTAAGGCGAGTGGATTATCGAAAACAAGGTCTTGGAGGTTTGAGTAAAGAGCGCAGAAAAAAATTGAAGGAAATGATCTTGCAAAAGGCAAAAAATGAACTTCTTGAAGAGAGAAGAAAAGAACTTCGA                                                                                                   ]
[+] EMBL CD193330             [                                                                                                                                                                                                                                                                                                                                        ATGATGTTAATAGTGATGACGATGATGATGTAATGACAGCTGAAGAGGAAGCCGCTATCGCGCGTCGATTTCTTGGTGGAAACGACCATACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAAGAACCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAGGCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACACCAAGAAAAATTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCAGAGCGTCCAAGAGACATTCAAAAGTCGCTGAAGAACAAGAGCCCAGTAAAAATAATC                                                                                                                                                                                                                                      ]
[-] EMBL CD195879             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAACATCAGAAAAAATTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCAGAGCGTCCAAAAGACATTCAAAAGTCGCTGAAGAACAAGAGCCCAGTAAAAATAATCAAGTAAGGCGAGTGGATTATCGAAAACAAGGTCTTGGAGGTTTGAGTAAAGAGCGCAGAAAAAAATTGAAGGAAATGATCTTGCAAAAGGCAAAAAATGAACTTCTTGAAGAGAGAAGAAAAGAACTCCGAAACCGTGAAGATCACATCAAGAAACAAGCTCCTCCGTTCGACATTGATGGTTTAAATCAAATGCAACTTGAAGAAAAGGTGAAGTCGTGGTACGAACAC]




>consensus_7277#0
AATTCGGCACGCAGGGAAAAAAATCAAAAAGATCAATAAATCAATCAATCAATAAATATT
TATTTACAAAATTAATCAATTAATTAAAACAATCAAATTATAATTAACTTGAATAAAGTT
GAATACCCAAAATATTCTGTTATGCGAATAACCATAATTAATTCTTATTCTAATCAAAAG
AAGAAAGAAACACGATAACAAGTCAACATGCCTATACCAAGTATTCATGTAAATTCGATT
GAAGATACTGAAAATGATGACAGACGAAATAAGAAACCTTCCATACCAATACTACGAGTA
GTTAGTGACGATATGGATGGACGTGAAAATGATGTTAATAGTGATGACGATGATGATGTA
ATGACAGCTGAAGAGGAAGCCGCTATCGCGCGTCGATTTCTTGGTGGAAACGACCATACA
GAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAAGAA
CCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAGGCAGAG
CAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACATCAAGAAAAATTAAGA
TTAGAACGTGAAGAGGTTAAAAAAGCCAGAGCGTCCAAAAGACATTCAAAAGTCGCTGAA
GAACAAGAGCCCAGTAAAAATAATCAAGTAAGGCGAGTGGATTATCGAAAACAAGGTCTT
GGAGGTTTGAGTAAAGAGCGCAGAAAAAAATTGAAGGAAATGATCTTGCAAAAGGCAAAA
AATGAACTTCTTGAAGAGAGAAGAAAAGAACTTCGAAACCGTGAAGATCACATCAAGAAA
CAAGCTCCTCCGTTCGACATTGATGGTTTAAATCAAATGCAACTTGAAGAAAAGGTGAAG
TCGTGGTACGAACAC

consensusID : consensus_7277#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [GATGGATGCCGGGCTTCCATACCAATACTACGAGTAGTTAGTGACGATATGGATGGACGTGAAAATGATGTTAATAGTGATGACGATGATGATGTAATGACAGCTGAAGAGGAAGCCGCTATCGCGCGTCGATTTCTTGGTGGAAACGACCATACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAAGAACCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAGGCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACATCAAGAAAAATTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCCAGA]

[-] EMBL BG932036             [GATGGATGCCGGGCTTCCATACCAATACTACGAGTAGTTAGTGACGATATGGATGGACGTGAAAATGATGTTAATAGTGATGACGATGATGATGTAATGACAGCTGAAGAGGAAGCCGCTATCGCGCGTCGATTTCTTGGTGGAAACGACCATACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAAGAACCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAGGCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACATCAAGAAAAATTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCCAGA]




>consensus_7277#1
GATGGATGCCGGGCTTCCATACCAATACTACGAGTAGTTAGTGACGATATGGATGGACGT
GAAAATGATGTTAATAGTGATGACGATGATGATGTAATGACAGCTGAAGAGGAAGCCGCT
ATCGCGCGTCGATTTCTTGGTGGAAACGACCATACAGAACAACGCAGAATGTCTTCATTG
GACATGTATCTCTCGCAGCCAGAAGTAAAACAAGAACCCATGATAATTAATCGTCATATA
AGTTTGAAAGAAGAAGAAAAAGGCTTTGAGGCAGAGCAAATGCTTCTTCGTCAAAAAGAA
CGTGAAGAAATGGAAAAACATCAAGAAAAATTAAGATTAGAACGTGAAGAGGTTAAAAAA
GCCCAGA

consensusID : consensus_7277#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [AAAATACAAAAAAATACCACATATCATTTTATTGAATTTTATCATTTTAAAAAATAACAAACAAATTATAAAGTGAGAATTTATACATCAATTTAAAAAAAAAATCAAAAAAATCAATAAATCAATCAATCAATAAATATTTATTTACAAAATTAATCAATTAATTAAAACAATCAAATTATAATTAACTTGAATAAAGTTGAATACCCAAAATATTCTGTTATGCGAATAACCATAATTAATTCTTATTCTAATCAAAAGAAGAAAGAAACACGATAACAAGTCNACATGCCTATACCAAGTATTCATGTAAA]

[+] EMBL CD195738             [AAAATACAAAAAAATACCACATATCATTTTATTGAATTTTATCATTTTAAAAAATAACAAACAAATTATAAAGTGAGAATTTATACATCAATTTAAAAAAAAAATCAAAAAAATCAATAAATCAATCAATCAATAAATATTTATTTACAAAATTAATCAATTAATTAAAACAATCAAATTATAATTAACTTGAATAAAGTTGAATACCCAAAATATTCTGTTATGCGAATAACCATAATTAATTCTTATTCTAATCAAAAGAAGAAAGAAACACGATAACAAGTCNACATGCCTATACCAAGTATTCATGTAAA]




>consensus_7277#2
AAAATACAAAAAAATACCACATATCATTTTATTGAATTTTATCATTTTAAAAAATAACAA
ACAAATTATAAAGTGAGAATTTATACATCAATTTAAAAAAAAAATCAAAAAAATCAATAA
ATCAATCAATCAATAAATATTTATTTACAAAATTAATCAATTAATTAAAACAATCAAATT
ATAATTAACTTGAATAAAGTTGAATACCCAAAATATTCTGTTATGCGAATAACCATAATT
AATTCTTATTCTAATCAAAAGAAGAAAGAAACACGATAACAAGTCNACATGCCTATACCA
AGTATTCATGTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7277#0      AATTCGGCACGCAGGGAAAAAAATCAAAAAGATCAATAAATCAATCAATCAATAAATATT 60
consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
                                                                                  

consensus_7277#0      TATTTACAAAATTAATCAATTAATTAAAACAATCAAATTATAATTAACTTGAATAAAGTT 120
consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
                                                                                  

consensus_7277#0      GAATACCCAAAATATTCTGTTATGCGAATAACCATAATTAATTCTTATTCTAATCAAAAG 180
consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
                                                                                  

consensus_7277#0      AAGAAAGAAACACGATAACAAGTCAACATGCCTATACCAAGTATTCATGTAAATTCGATT 240
consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
                                                                                  

consensus_7277#0      GAAGATACTGAAAATGATGACAGACGAAATAAGAAACCTTCCATACCAATACTACGAGTA 300
consensus_7277#1      ----------------------GATGGATGCCGGG--CTTCCATACCAATACTACGAGTA 36
consensus_7277#2      ------------------------------------------------------------
                                                                                  

consensus_7277#0      GTTAGTGACGATATGGATGGACGTGAAA-ATGATGTTAATAGTGATGACGATGATGATGT 359
consensus_7277#1      GTTAGTGACGATATGGATGGACGTGAAA-ATGATGTTAATAGTGATGACGATGATGATGT 95
consensus_7277#2      -------AAAATACAAAAAAATACCACATATCATTTTATTGAATTTTATCATTTTAA-AA 52
                             *  ***   *   *    * * ** ** *** *     * *  **  * *   

consensus_7277#0      AATGACAGCTGAAGAGGAAGCCGCTA--TCGCGCGTCGATTTCTTGGTGGAAACGACCAT 417
consensus_7277#1      AATGACAGCTGAAGAGGAAGCCGCTA--TCGCGCGTCGATTTCTTGGTGGAAACGACCAT 153
consensus_7277#2      AATAACAAACAAATTATAAAGTGAGAATTTATACATCAATTT----AAAAAAAAAATCAA 108
                      *** ***    **    **   *  *  *    * ** ****        ***  * ** 

consensus_7277#0      ACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAA 477
consensus_7277#1      ACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAA 213
consensus_7277#2      AAAAATCAATAAATCAATCAATCAATAAATATTTATTTACAAAATTAATCAATTAATTAA 168
                      * * * ***   *  *     *** *  * ** *** *     *   *  * * **  **

consensus_7277#0      GAA---CCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAG 534
consensus_7277#1      GAA---CCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAG 270
consensus_7277#2      AACAATCAAATTATAATTAAC--TTGAATAAAGTTGAA--TACCCAAAATATTCTGTTAT 224
                       *    *  ** ********   *   ****  *****   *    *** *  ** * * 

consensus_7277#0      GCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACATCAAGAAAAA 594
consensus_7277#1      GCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACATCAAGAAAAA 330
consensus_7277#2      GC-GAATAACCATAATTAATTCTTATTCTAATCAAAAGAAGAAAGAAACACGATAACAAG 283
                      ** **  **       *   **  *    *    **  **   * *****  *  * ** 

consensus_7277#0      TTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCAGAGCGTCCAAAAGACATTCAAAAGTC 654
consensus_7277#1      TTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCCAGA----------------------- 367
consensus_7277#2      TCNACATGCCTATACCAAGTATTCATGTAAA----------------------------- 314
                      *  * **    *    ***   * *   **                              

consensus_7277#0      GCTGAAGAACAAGAGCCCAGTAAAAATAATCAAGTAAGGCGAGTGGATTATCGAAAACAA 714
consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
                                                                                  

consensus_7277#0      GGTCTTGGAGGTTTGAGTAAAGAGCGCAGAAAAAAATTGAAGGAAATGATCTTGCAAAAG 774
consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
                                                                                  

consensus_7277#0      GCAAAAAATGAACTTCTTGAAGAGAGAAGAAAAGAACTTCGAAACCGTGAAGATCACATC 834
consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
                                                                                  

consensus_7277#0      AAGAAACAAGCTCCTCCGTTCGACATTGATGGTTTAAATCAAATGCAACTTGAAGAAAAG 894
consensus_7277#1      ------------------------------------------------------------
consensus_7277#2      ------------------------------------------------------------
                                                                                  

consensus_7277#0      GTGAAGTCGTGGTACGAACAC 915
consensus_7277#1      ---------------------
consensus_7277#2      ---------------------