These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 915 fasta sequence [AATTCGGCACGCAGGGAAAAAAATCAAAAAGATCAATAAATCAATCAATCAATAAATATTTATTTACAAAATTAATCAATTAATTAAAACAATCAAATTATAATTAACTTGAATAAAGTTGAATACCCAAAATATTCTGTTATGCGAATAACCATAATTAATTCTTATTCTAATCAAAAGAAGAAAGAAACACGATAACAAGTCAACATGCCTATACCAAGTATTCATGTAAATTCGATTGAAGATACTGAAAATGATGACAGACGAAATAAGAAACCTTCCATACCAATACTACGAGTAGTTAGTGACGATATGGATGGACGTGAAAATGATGTTAATAGTGATGACGATGATGATGTAATGACAGCTGAAGAGGAAGCCGCTATCGCGCGTCGATTTCTTGGTGGAAACGACCATACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAAGAACCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAGGCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACATCAAGAAAAATTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCAGAGCGTCCAAAAGACATTCAAAAGTCGCTGAAGAACAAGAGCCCAGTAAAAATAATCAAGTAAGGCGAGTGGATTATCGAAAACAAGGTCTTGGAGGTTTGAGTAAAGAGCGCAGAAAAAAATTGAAGGAAATGATCTTGCAAAAGGCAAAAAATGAACTTCTTGAAGAGAGAAGAAAAGAACTTCGAAACCGTGAAGATCACATCAAGAAACAAGCTCCTCCGTTCGACATTGATGGTTTAAATCAAATGCAACTTGAAGAAAAGGTGAAGTCGTGGTACGAACAC] [+] EMBL CD081780 [AATTCGGCACGCAGGGAAAAAAATCAAAAAGATCAATAAATCAATCAATCAATAAATATTTATTTACAAAATTAATCAATTAATTAAAACAATCAAATTATAATTAACTTGAATAAAGTTGAATACCCAAAATATTCTGTTATGCGAATAACCATAATTAATTCTTATTCTAATCAAAAGAAGAAAGAAACACGATAACAAGTCAACATGCCTATACCAAGTATTCATGTAAATTCGATTGAAGATACTGAAAATGATGACAGACGAAATAAGAAACCTTCCATACCAATACTACGAGTAGTTAGTGACGATATGGATGGACGTGAAAATGATGTTAATAGTGATGACGATGATGATGTAATGACAGCTGAAGAGGAAGCCGCTATCGCGCGTCGATTTCTTGGTGGAAACGACCATACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAAGAACCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAGGCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACATCAAGAAAAATTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCAGAGCGTCCAAAAGACATTCAAAAGTCGCTGAAGAACAAGAGCCCAGTAAAAATAATCAAGTAAGGCGAGTGGATTATCGAAAACAAGGTCTTGGAGGTTTGAGTAAAGAGCGCAGAAAAAAATTGAAGGAAATGATCTTGCAAAAGGCAAAAAATGAACTTCTTGAAGAGAGAAGAAAAGAACTTCGA ] [+] EMBL CD193330 [ ATGATGTTAATAGTGATGACGATGATGATGTAATGACAGCTGAAGAGGAAGCCGCTATCGCGCGTCGATTTCTTGGTGGAAACGACCATACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAAGAACCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAGGCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACACCAAGAAAAATTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCAGAGCGTCCAAGAGACATTCAAAAGTCGCTGAAGAACAAGAGCCCAGTAAAAATAATC ] [-] EMBL CD195879 [ AAACATCAGAAAAAATTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCAGAGCGTCCAAAAGACATTCAAAAGTCGCTGAAGAACAAGAGCCCAGTAAAAATAATCAAGTAAGGCGAGTGGATTATCGAAAACAAGGTCTTGGAGGTTTGAGTAAAGAGCGCAGAAAAAAATTGAAGGAAATGATCTTGCAAAAGGCAAAAAATGAACTTCTTGAAGAGAGAAGAAAAGAACTCCGAAACCGTGAAGATCACATCAAGAAACAAGCTCCTCCGTTCGACATTGATGGTTTAAATCAAATGCAACTTGAAGAAAAGGTGAAGTCGTGGTACGAACAC] consensusID : consensus_7277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [GATGGATGCCGGGCTTCCATACCAATACTACGAGTAGTTAGTGACGATATGGATGGACGTGAAAATGATGTTAATAGTGATGACGATGATGATGTAATGACAGCTGAAGAGGAAGCCGCTATCGCGCGTCGATTTCTTGGTGGAAACGACCATACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAAGAACCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAGGCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACATCAAGAAAAATTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCCAGA] [-] EMBL BG932036 [GATGGATGCCGGGCTTCCATACCAATACTACGAGTAGTTAGTGACGATATGGATGGACGTGAAAATGATGTTAATAGTGATGACGATGATGATGTAATGACAGCTGAAGAGGAAGCCGCTATCGCGCGTCGATTTCTTGGTGGAAACGACCATACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAAGAACCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAGGCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACATCAAGAAAAATTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCCAGA] consensusID : consensus_7277#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [AAAATACAAAAAAATACCACATATCATTTTATTGAATTTTATCATTTTAAAAAATAACAAACAAATTATAAAGTGAGAATTTATACATCAATTTAAAAAAAAAATCAAAAAAATCAATAAATCAATCAATCAATAAATATTTATTTACAAAATTAATCAATTAATTAAAACAATCAAATTATAATTAACTTGAATAAAGTTGAATACCCAAAATATTCTGTTATGCGAATAACCATAATTAATTCTTATTCTAATCAAAAGAAGAAAGAAACACGATAACAAGTCNACATGCCTATACCAAGTATTCATGTAAA] [+] EMBL CD195738 [AAAATACAAAAAAATACCACATATCATTTTATTGAATTTTATCATTTTAAAAAATAACAAACAAATTATAAAGTGAGAATTTATACATCAATTTAAAAAAAAAATCAAAAAAATCAATAAATCAATCAATCAATAAATATTTATTTACAAAATTAATCAATTAATTAAAACAATCAAATTATAATTAACTTGAATAAAGTTGAATACCCAAAATATTCTGTTATGCGAATAACCATAATTAATTCTTATTCTAATCAAAAGAAGAAAGAAACACGATAACAAGTCNACATGCCTATACCAAGTATTCATGTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7277#0 AATTCGGCACGCAGGGAAAAAAATCAAAAAGATCAATAAATCAATCAATCAATAAATATT 60 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 TATTTACAAAATTAATCAATTAATTAAAACAATCAAATTATAATTAACTTGAATAAAGTT 120 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 GAATACCCAAAATATTCTGTTATGCGAATAACCATAATTAATTCTTATTCTAATCAAAAG 180 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 AAGAAAGAAACACGATAACAAGTCAACATGCCTATACCAAGTATTCATGTAAATTCGATT 240 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 GAAGATACTGAAAATGATGACAGACGAAATAAGAAACCTTCCATACCAATACTACGAGTA 300 consensus_7277#1 ----------------------GATGGATGCCGGG--CTTCCATACCAATACTACGAGTA 36 consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 GTTAGTGACGATATGGATGGACGTGAAA-ATGATGTTAATAGTGATGACGATGATGATGT 359 consensus_7277#1 GTTAGTGACGATATGGATGGACGTGAAA-ATGATGTTAATAGTGATGACGATGATGATGT 95 consensus_7277#2 -------AAAATACAAAAAAATACCACATATCATTTTATTGAATTTTATCATTTTAA-AA 52 * *** * * * * ** ** *** * * * ** * * consensus_7277#0 AATGACAGCTGAAGAGGAAGCCGCTA--TCGCGCGTCGATTTCTTGGTGGAAACGACCAT 417 consensus_7277#1 AATGACAGCTGAAGAGGAAGCCGCTA--TCGCGCGTCGATTTCTTGGTGGAAACGACCAT 153 consensus_7277#2 AATAACAAACAAATTATAAAGTGAGAATTTATACATCAATTT----AAAAAAAAAATCAA 108 *** *** ** ** * * * * ** **** *** * ** consensus_7277#0 ACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAA 477 consensus_7277#1 ACAGAACAACGCAGAATGTCTTCATTGGACATGTATCTCTCGCAGCCAGAAGTAAAACAA 213 consensus_7277#2 AAAAATCAATAAATCAATCAATCAATAAATATTTATTTACAAAATTAATCAATTAATTAA 168 * * * *** * * *** * * ** *** * * * * * ** ** consensus_7277#0 GAA---CCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAG 534 consensus_7277#1 GAA---CCCATGATAATTAATCGTCATATAAGTTTGAAAGAAGAAGAAAAAGGCTTTGAG 270 consensus_7277#2 AACAATCAAATTATAATTAAC--TTGAATAAAGTTGAA--TACCCAAAATATTCTGTTAT 224 * * ** ******** * **** ***** * *** * ** * * consensus_7277#0 GCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACATCAAGAAAAA 594 consensus_7277#1 GCAGAGCAAATGCTTCTTCGTCAAAAAGAACGTGAAGAAATGGAAAAACATCAAGAAAAA 330 consensus_7277#2 GC-GAATAACCATAATTAATTCTTATTCTAATCAAAAGAAGAAAGAAACACGATAACAAG 283 ** ** ** * ** * * ** ** * ***** * * ** consensus_7277#0 TTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCAGAGCGTCCAAAAGACATTCAAAAGTC 654 consensus_7277#1 TTAAGATTAGAACGTGAAGAGGTTAAAAAAGCCCAGA----------------------- 367 consensus_7277#2 TCNACATGCCTATACCAAGTATTCATGTAAA----------------------------- 314 * * ** * *** * * ** consensus_7277#0 GCTGAAGAACAAGAGCCCAGTAAAAATAATCAAGTAAGGCGAGTGGATTATCGAAAACAA 714 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 GGTCTTGGAGGTTTGAGTAAAGAGCGCAGAAAAAAATTGAAGGAAATGATCTTGCAAAAG 774 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 GCAAAAAATGAACTTCTTGAAGAGAGAAGAAAAGAACTTCGAAACCGTGAAGATCACATC 834 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 AAGAAACAAGCTCCTCCGTTCGACATTGATGGTTTAAATCAAATGCAACTTGAAGAAAAG 894 consensus_7277#1 ------------------------------------------------------------ consensus_7277#2 ------------------------------------------------------------ consensus_7277#0 GTGAAGTCGTGGTACGAACAC 915 consensus_7277#1 --------------------- consensus_7277#2 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||