These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 595 fasta sequence [AATTTGACCACTTGGCCATGGAATAATATTTAATAAATCATTAGGCGCTGAAATAGGCCATTGTACACGACTATTTAATAAGGTCACATTGAAATATTGATCTTCGTAAGATTTCAACTGATTATTCATTTTTTCATCGACATCAACACGACTGACATTTATAGATGGTTTACTACGATAACATTTAATTTCATACGATTCAAATATACCATGACGATGATCCCAATCAGGTGGATTCCATGATAGGATTATTTGATCTAATGTATAACTGACTTGTATTGAAGTTGGTGTATTTGTTGGTGCTGTTCCTTCAAATGACACTGTTTCTATAGTTTCATAACCAATTTGTAATGTTGTGATTACAGCAACACGAAATTCATAACTCATACCAAGTAGAAATATACCAGAAGCAGGATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGATTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTGCTGTTGTGGTTCGATTTGTTGGTGTTTCTGTTGTTTTTCAATGATAGGCCAATATAATGTC] [+] EMBL CD114335 [AATTTGACCACTTGGCCATGGAATAATATTTAATAAATCATTAGGCGCTGAAATAGGCCATTGTACACGACTATTTAATAAGGTCACATTGAAATATTGATCTTCGTAAGATTTCAACTGATTATTCATTTTTTCATCGACATCAACACGACTGACATTTATAGATGGTTTACTACGATAACATTTAATTTCATACGATTCAAATATACCATGACGATGATCCCAATCAGGTGGATTCCATGATAGGATTATTTGATCTAATGTATAACTGACTTGTATTGAAGTTGGTGTATTTGTTGGTGCTGTTCCTTCAAATGACACTGTTTCTATAGTTTCATAACCAATTTGTAATGTTGTGATTACAGCAACACGAAATTCATAACTCATACCAAGTAGAAATATACCAGAAGCAGGATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGATTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTGCTGTTGTGGTTCGATTTGTTGG ] [+] EMBL CD119090 [ GACATTTATAGATGGTTTACTACGATAACATTTAATTTCATACGATTCAAATATACCATGACGATGATCCCAATCAGGTGGATTCCATGATAGGATTATTTGATCTAATGTATAACTGACTTGTATTGAAGTTGGTGTATTTGTTGGTGCTGTTCCTTCAAATGACACTGTTTCTATAGTTTCATAACCAATTTGTAATGTTGTGATTACAGCAACACGAAATTCATAACTCATACCAAGTAGAAATATACCAGAAGCAGGATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGATTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTGCTGTTGTGGTTCGATTTGTTGGTGTTTCTGTTGTTTTTCAATGATAGGCCAATATAATGTC] [+] EMBL CD119273 [ GACATTTATAGATGGTTTACTACGATAACATTTAATTTCATACGATTCAAATATACCATGACGATGATCCCAATCAGGTGGATTCCATGATAGGATTATTTGATCTAATGTATGACTGACTTGTATTGAAGTTGGTGTATTTGTTGGTGCTGTTCCTTCAAATGACACTGTTTCTATAGTTTCATAACCAATTTGTAGTGTTGTGATTACAGCAACACGAAATTCATAACTCATACCAAGTAGAAATATACCAGAAGCAGGATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGATTCTGATTGAACTGGATTGCGAGCACCATTTTCTATGAATTGA ] consensusID : consensus_7278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [TGCATGAAAGAATTAGAAGGATGGGAACCTGATGATGATCCAGACAAAGAGCATAAAAGTCATTCACCAAAGTGCCCTTTCCTCAAATCTAAGCAATATGAACAAATGACTTATGAAGAAGGTTTAGCGATGGATGTTGAAAGGTATTGTACTTATCTTTCCAAGATTCTTTCGGATCAGTATGATGTCCAAAAAGTCCAAAAGGCATTTAAAATGTTTACTGAAATTGTATTATCCAAACTACCAAAGCGGAATAAAAAAAGAAAATCGAACCTCAGCAAAAGAACAAACTCAATTATGTCAAATTCAAGTATTAAATCAAC] [+] EMBL CD135669 [TGCATGAAAGAATTAGAAGGATGGGAACCTGATGATGATCCAGACAAAGAGCATAAAAGTCATTCACCAAAGTGCCCTTTCCTCAAATCTAAGCAATATGAACAAATGACTTATGAAGAAGGTTTAGCGATGGATGTTGAAAGGTATTGTACTTATCTTTCCAAGATTCTTTCGGATCAGTATGATGTCCAAAAAGTCCAAAAGGCATTTAAAATGTTTACTGAAATTGTATTATCCAAACTACCAAAGCGGAATAAAAAAAGAAAATCGAACCTCAGCAAAAGAACAAACTCAATTATGTCAAATTCAAGTATTAAATCAAC] consensusID : consensus_7278#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence [GAAAGAATCTTGGAAAGATAAGTACAATACCTTTCAACATCCATCGCTAAACCTTCTTCATAACCAATTTGTAATGTTGTGATTACAGCAACACGAAATTCATAACTCATACCAAGTAGAAATATACCAGAAGCAGGATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGATTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTGCTGTTGTGGTTCGAT] [-] EMBL CD192424 [GAAAGAATCTTGGAAAGATAAGTACAATACCTTTCAACATCCATCGCTAAACCTTCTTCATAACCAATTTGTAATGTTGTGATTACAGCAACACGAAATTCATAACTCATACCAAGTAGAAATATACCAGAAGCAGGATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGATTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTGCTGTTGTGGTTCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7278#0 AATTTGACCACTTGGCCATGGAATAATATTTAATAAATCATTAGGCGCTGAAATAGGCCA 60 consensus_7278#2 ------------------------------------------------------------ consensus_7278#1 ------------------------------------------------------------ consensus_7278#0 TTGTACACGACTATTTAATAAGGTCACATTGAAATATTGATCTTCGTAAGATTTCAACTG 120 consensus_7278#2 ------------------------------------------------------------ consensus_7278#1 ------------------------------------------------------------ consensus_7278#0 ATTATTCATTTTTTCATCGACATCAACACGACTGACATTTATAGATGGTTTACTACGATA 180 consensus_7278#2 ------------------------------------------------------------ consensus_7278#1 ------------------------------------------------------------ consensus_7278#0 ACATTTAATTTCATACGATTCAAATATACCATGACGATGATCCCAATCAGGTGGATTCCA 240 consensus_7278#2 ------------------------------------------------------------ consensus_7278#1 ------------------------------TGCATGAAAGAATTAGAAGGATGGGAACCT 30 consensus_7278#0 TGATAGGATTATTTGATCTAATGTATAACTGACTTGTATTGAAGTTGGTGTAT-TTGTTG 299 consensus_7278#2 --------------------------------------GAAAGAATCTTGGAA-AGATAA 21 consensus_7278#1 GATGATGATCCAGACAAAGAGCATAAAAGTCATTCACCAAAGTGCCCTTTCCTCAAATCT 90 * * consensus_7278#0 GTGCTGTTCCTTCAAATGAC-ACTGTTTCTATAGTTTCATAACCAAT-TTGTAA--TGTT 355 consensus_7278#2 GTACAATACCTTTCAACATCCATCGCTAAACCTTCTTCATAACCAAT-TTGTAA--TGTT 78 consensus_7278#1 AAGCAATATGAACAAATGAC--TTATGAAGAAGGTTTAGCGATGGATGTTGAAAGGTATT 148 * * ** * ** * ** *** ** * ** consensus_7278#0 GTGATTACAGCAACACGAAATTCATAACTCA-TACCAAGTAGAAATATACCAGAAGCAGG 414 consensus_7278#2 GTGATTACAGCAACACGAAATTCATAACTCA-TACCAAGTAGAAATATACCAGAAGCAGG 137 consensus_7278#1 GTACTTATCTTTCCAAGATTCTTTCGGATCAGTATGATGTCCAAAAAGTCCAAAAG--GC 206 ** *** ** ** * *** ** * ** *** * *** *** * consensus_7278#0 ATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGA 474 consensus_7278#2 ATTCCAACTAGTTTCAGTTAAATTCACTTCACCATGTAAAAATTTGGTTGGAACAAGTGA 197 consensus_7278#1 ATTTAAAATG--TTTACTGAAATTGTATTATCCA---AACTACCAAAGCGGAATAAAAAA 261 *** ** * ** * * ***** ** *** ** * **** ** * consensus_7278#0 TTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTG 534 consensus_7278#2 TTCTGATTGAAATGGATTGCGAGCACCATTTTCTATGAATTGATTCGCATGGTATTGGTG 257 consensus_7278#1 AGAAAATCGAACCTCAGCAAAAGAACAAACTCAATTATGTCAAATTCAA--GTATTAAAT 319 ** *** * ** ** * * * * * * * ***** consensus_7278#0 CTGTTGTGGTTCGATTTGTTGGTGTTTCTGTTGTTTTTCAATGATAGGCCAATATAATGT 594 consensus_7278#2 CTGTTGTGGTTCGAT--------------------------------------------- 272 consensus_7278#1 CAAC-------------------------------------------------------- 323 * consensus_7278#0 C 595 consensus_7278#2 - consensus_7278#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||