cluster # 7279

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Schistosoma mansoni
cluster # 7279 cluster # 7279 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7279#0 length = 753 sequences # 4

consensus_7279#1 length = 423 sequences # 1

consensusID : consensus_7279#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 753
fasta sequence

                              [CTACAAGAATGATTAGCATGTANTAATAGCTTTTATAATTAAAATGCCTCTATATGGAGTTCACTTATGACTACCCAAAGCTCATGTAGAAGCTCCTATTGCAGGATCAATAATTCTAGCTGCAATTTTACTGAAACTAGGTGGTTACGGAATAATACGAGTATCAATTATCCTTGATCCTATAACAGAGACTATAGCATATCCCTTCATTCTTTTATCACTATGAGGTATACTTATAACAAGTTCTATCTGCCTACGACAAACAGATCTAAAGTCATTAATCGCTTACTCTTCAGTAAGTCATATAGCACTAGTTATTGCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTAATAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTCAATCATTCTTGTAGGTACAAATATCCTAATTACAGCTCTATACTCACTCTATATACTTATCATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACGAGAGTTAACCCTAATAATACTACACATCACACC]

[+] EMBL CD168170             [CTACAAGAATGATTAGCATGTANTAATAGCTTTTATAATTAAAATGCCTCTATATGGAGTTCACTTATGACTACCCAAAGCTCATGTAGAAGCTCCTATTGCAGGATCAATAATTCTAGCTGCAATTTTACTGAAACTAGGTGGTTACGGAATAATACGAGTATCAATTATCCTTGATCCTATAACAGAGACTATAGCATATCCCTTCATTCTTTTATCACTATGAGGTATACTTATAACAAGTTCTATCTGCCTACGACAAACAGATCTAAAGTCATTAATCGCTTACTCTTCAGTAAGTCATATAGCACTAGTTATTGCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTAATAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAAT                                                                                                                                                                                    ]
[+] EMBL CD169338             [                                                                                                                                                                                                                                                                                                                                          AATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTAATAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTCAATCATTCTTGTAGGTACAAATATCCTAATTACAGCTCTATACTCACTCTATATACTTATCATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACGAGAGTTAACCCTAATAATACTACACATCACAC ]
[+] EMBL CD169354             [                                                                                                                                                                                                                                                                                                                                          AATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTAATAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCAAAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTCAATCATTCTTGTAGGTACAAATATCCTAATTACAGCTCTATACTCACTCTATAGACTTATCATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACAC                                    ]
[-] EMBL CD169590             [                                                                                                                                                                                                                                                                                                                                           ATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTAATAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTCAATCATTCTTGTAGGTACAAATATCCTAATTACAGCTCTATACTCACTCTATATACTTATCATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACGAGAGTTAACCCTAATAATACTACACATCACACC]




>consensus_7279#0
CTACAAGAATGATTAGCATGTANTAATAGCTTTTATAATTAAAATGCCTCTATATGGAGT
TCACTTATGACTACCCAAAGCTCATGTAGAAGCTCCTATTGCAGGATCAATAATTCTAGC
TGCAATTTTACTGAAACTAGGTGGTTACGGAATAATACGAGTATCAATTATCCTTGATCC
TATAACAGAGACTATAGCATATCCCTTCATTCTTTTATCACTATGAGGTATACTTATAAC
AAGTTCTATCTGCCTACGACAAACAGATCTAAAGTCATTAATCGCTTACTCTTCAGTAAG
TCATATAGCACTAGTTATTGCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGC
CTCAGCATTAATAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATAC
TAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATT
CCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTC
AATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTC
AATCATTCTTGTAGGTACAAATATCCTAATTACAGCTCTATACTCACTCTATATACTTAT
CATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACG
AGAGTTAACCCTAATAATACTACACATCACACC

consensusID : consensus_7279#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [TCACTGGGAGAACCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTACTAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTCAATCATTCTTGTAGGTACAAATATCCTAATTACAGCCCTATACTCACTCTATATACTTATCATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACGAGAGTTAACC]

[+] EMBL CD168892             [TCACTGGGAGAACCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCATTACTAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTCAATCATTCTTGTAGGTACAAATATCCTAATTACAGCCCTATACTCACTCTATATACTTATCATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACGAGAGTTAACC]




>consensus_7279#1
TCACTGGGAGAACCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGCCTCAGCA
TTACTAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATACTAACTAT
GAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATTCCCTCTA
ATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTCAATTAAC
CTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTCAATCATT
CTTGTAGGTACAAATATCCTAATTACAGCCCTATACTCACTCTATATACTTATCATAACC
CAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACGAGAGTTA
ACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7279#0      CTACAAGAATGATTAGCATGTANTAATAGCTTTTATAATTAAAATGCCTCTATATGGAGT 60
consensus_7279#1      ------------------------------------------------------------
                                                                                  

consensus_7279#0      TCACTTATGACTACCCAAAGCTCATGTAGAAGCTCCTATTGCAGGATCAATAATTCTAGC 120
consensus_7279#1      ------------------------------------------------------------
                                                                                  

consensus_7279#0      TGCAATTTTACTGAAACTAGGTGGTTACGGAATAATACGAGTATCAATTATCCTTGATCC 180
consensus_7279#1      ------------------------------------------------------------
                                                                                  

consensus_7279#0      TATAACAGAGACTATAGCATATCCCTTCATTCTTTTATCACTATGAGGTATACTTATAAC 240
consensus_7279#1      ------------------------------------------------------------
                                                                                  

consensus_7279#0      AAGTTCTATCTGCCTACGACAAACAGATCTAAAGTCATTAATCGCTTACTCTTCAGTAAG 300
consensus_7279#1      ------------------------------------------------------------
                                                                                  

consensus_7279#0      TCATATAGCACTAGTTATTGCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGC 360
consensus_7279#1      -------TCACTGGGAGAACCAGCTATTATAATTCAAACTCCCTGAAGTTTTATAGGAGC 53
                              **** *      ****************************************

consensus_7279#0      CTCAGCATTAATAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATAC 420
consensus_7279#1      CTCAGCATTACTAATCGCACATGGACTCACATCATCACTATTATTCTGCCTAGCAAATAC 113
                      ********** *************************************************

consensus_7279#0      TAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATT 480
consensus_7279#1      TAACTATGAACGAATCCATAGTCGAACTATAATTATAGCCCGAGGCCTTCAAACAGCATT 173
                      ************************************************************

consensus_7279#0      CCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTC 540
consensus_7279#1      CCCTCTAATAGCAACTCTATGATTTCTAGGAAGCCTGGCAAACCTAGCCTTACCCCCTTC 233
                      ************************************************************

consensus_7279#0      AATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTC 600
consensus_7279#1      AATTAACCTAATTGGAGAACTACTTATTACAATTACACTATTCTCCTGATCACACCTGTC 293
                      ************************************************************

consensus_7279#0      AATCATTCTTGTAGGTACAAATATCCTAATTACAGCTCTATACTCACTCTATATACTTAT 660
consensus_7279#1      AATCATTCTTGTAGGTACAAATATCCTAATTACAGCCCTATACTCACTCTATATACTTAT 353
                      ************************************ ***********************

consensus_7279#0      CATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACG 720
consensus_7279#1      CATAACCCAACGAGGAAAACTTACATTTCATATAAACAACCTCCAACCTTCCTACACACG 413
                      ************************************************************

consensus_7279#0      AGAGTTAACCCTAATAATACTACACATCACACC 753
consensus_7279#1      AGAGTTAACC----------------------- 423
                      **********