These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence [CCCTCGAGCCAANAATTCGGCACGAGGTGTAAGCGTATCCGCAAGACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATTTAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGATTGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAACACTGGTCAGTTACTGCACCAATTTCACTACTGATTTTATGTATATCTGGTCTTTTTGCTTACATTTGGAATAATCGTTCACTCATGCAACCGCTTACATCGATTTATCAAATTAGAGATTCGCTTTCAATGTATGCTCGAAATTCAACTGATAGTTATGTCACAGATCAACAGTCGTCTAATTCAAACGTATCAAAACCAGTCGAGTTATTGAGACCATTATCGATAATCCCCCCTGTGTATGATTTGGATCATATTTGGGTAACGAGTGAGTTGTATTTAAAGACAAATAAAATTACCACCTCAAGCATTATTGACCATAATATTGTGAAGTATTAACAAAACAAAAAGGATAAGATTTCGTTTTTGTGACTTATTAGGT] [+] EMBL CD081927 [CCCTCGAGCCAANAATTCGGCACGAGGTGTAAGCGTATCCGCAAGACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATTTAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGATTGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAACACTGGTCAGTTACTGCACCAATTTCACTACTGATTTTATGTATATCTGGTCTTTTTGCTTACATTTGGAATAATCGTTCACTCATGCAACCGCTTACATCGATTTATCAAATTAGAGATTCGCTTTCAATGTATGCTCGAAATTCAACTGATAGTTATGTCACAGATCAACAGTCGTCTAATTCAAACGTATCAAAACCAGTCGAGTTATTGAGACCATTATCGATAATCCCCCCTGTGTATGATTTGGATCATATTTGGGTAACGAGTGAGTTGTATTTAAAGACAAATAAAATTACCACCTCAAGCATTATTGACCATAATATTGTGAAGTATTAACAAAACAAAAAGGATAAGATTTCGTTTTTGTGACTTATTAGG ] [+] EMBL CD081699 [ TCGGCACGACGTGTAAGCGTATCCGCAATACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATTTAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGATTGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAACACTGGTCAGTTACTGCACCAATTTCACTACTGATTTTATGTATATCTGGTCTTTTTGCTTACATTTGGAATAATCGTTCACTCATGCAACCGCTTACATCGATTTATCAAATTAGAGATTCGCTTTCAATGTATGCTCGAAATTCAACTGATAGTTATGTCACAGATCAACAGTCGTCTAATTCAAACGTATCAAAACCAGTCGAGTTATTGAGACCATTATCGATAATCCCCCCTGTGTATGATTTGGATCATATTTGGGTAACGAGTGAGTTGTATTTAAAGACAAATAAAATTACCACCTCAAGCATTATTGACCATAATATTGTGAAGTATTAACAAAACAAAAAGGATAAGATTTCGTTTTTGTGACTTATTAGGT] consensusID : consensus_7283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [GTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAACACTGGTCAGTTACTGCACCAATTTCACTACTGATTTTATGTATATCTGGTCTTTTTGCTTACATTTGGAATAATCGTTCACTCATGCAACCGCTTACATCGATTTATCAAATTAGAGGTATTTGTTGGTGCTGAGAAATGAGAATTTCGTTCTACACTTCATATTTTGGAAGCTTACACAGCGAAATCAGGATATGTTATTGCGACATCCGTTGTTAGCTTCCTAATCAATCATCTAATGCACTTCAAAAGCCATGTGAAGAGAATGTGACATTTAATTAAATAAAAGCGAGTAAACTTTCAGCTCAACGATCTTTCTTACAATGATCTAGTGTTTAATTTTTGTCCC] [+] EMBL CD121844 [GTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAACACTGGTCAGTTACTGCACCAATTTCACTACTGATTTTATGTATATCTGGTCTTTTTGCTTACATTTGGAATAATCGTTCACTCATGCAACCGCTTACATCGATTTATCAAATTAGAGGTATTTGTTGGTGCTGAGAAATGAGAATTTCGTTCTACACTTCATATTTTGGAAGCTTACACAGCGAAATCAGGATATGTTATTGCGACATCCGTTGTTAGCTTCCTAATCAATCATCTAATGCACTTCAAAAGCCATGTGAAGAGAATGTGACATTTAATTAAATAAAAGCGAGTAAACTTTCAGCTCAACGATCTTTCTTACAATGATCTAGTGTTTAATTTTTGTCCC] consensusID : consensus_7283#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 356 fasta sequence [GTGATTTCTGCTCAAGTTGTTGTACTTATTTCATGTGTTCGATCGATGAATCATGTAAGCGTATCCGCAAGACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATTTAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGATTGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAGTATTTGTTGGTGCTAAGAAATGAGAATTTCGTTCTACACTTCATATTTTGGAAGCTTACACAGCGAAATCAGGATATGTTATTGCG-ACATCCGTTGTTAGCTTCT] [-] EMBL CD117571 [GTGATTTCTGCTCAAGTTGTTGTACTTATTTCATGTGTTCGATCGATGAATCATGTAAGCGTATCCGCAAGACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATTTAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGATTGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACCTACCCAGCAAGTATTTGTTGGTGCTAAGAAATGAGAATTTCGTTCTACACTTCATATTTTGGAAGCTTACACAGCGAAATCAGGATATGTTATTGCG ACATCCGTTGTTAGCTTCT] [-] EMBL CD117575 [GTGATTTCTGCTCAAGTTGTTGTACTTATTTCATGTGTTCGATCGATGAATCATGTAAGCGTATCCGCAAGACAAAACCTTCAATCGCTATTCCTTATATTCATCCAAATCGTGAGCATTTAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGATTGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATGACGTACTTACCCAGCAAGTATTTGTTGGTGCTAACAAAAGAGATGTTCGTTCGACCATTCATA GTTGAGAGCTTACACAGCCTAATCAGCATGCG CATTGCGCACATCCGTCGTTAGGTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7283#0 ----------------------CCCTCGAGCCAANAATTCGGC--ACGAG--GTGTAAGC 34 consensus_7283#2 GTGATTTCTGCTCAAGTTGTTGTACTTATTTCATGTGTTCGATCGATGAATCATGTAAGC 60 consensus_7283#1 ---------------------------------------------GTATGTAATTTGGGC 15 * * ** consensus_7283#0 GTATCCGCAAGACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATT 94 consensus_7283#2 GTATCCGCAAGACAAAACCTTCAATCGCTATTCCCTATATTCATCCAAATCGTGAGCATT 120 consensus_7283#1 ATATATTCCACATGAATGGTTGAATT-TAATTGGAATAACGTACCTACCCAGCAAACACT 74 *** * * * ** ** *** *** * * * * * * ** * consensus_7283#0 TAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGAT 154 consensus_7283#2 TAGATGAAAGGGCAATTTATGGCTTCATTATATATCTTGTATGTTTTCCTGCATTTGGAT 180 consensus_7283#1 GGTCAGTTACTGCA----CCAATTTCACTACTGATTTTATGTATATCTGGTCTTTTTGCT 130 * * *** **** ** ** ** * * * * * *** * * consensus_7283#0 TGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACC 214 consensus_7283#2 TGTATGTAATTTGGGCATATATTCCACATGAATGGTTGAATTTAATTGGAATAACGTACC 240 consensus_7283#1 TACATTTGGAATAATCGTTCACTC-ATGCAACCGCTTACATCGATTT----------ATC 179 * ** * * * * * ** * * * ** ** * ** * * consensus_7283#0 TACCCAGCAAACACTGGTCAGTTACTGCACCAATTTCACTACTGATTTTATGTATATCTG 274 consensus_7283#2 TACCCAGCAAGTATTTGTTGGT-GCTA-AGAAATGAGAAT-TTCGTTCTACACTT-CATA 296 consensus_7283#1 AAATTAG-AGGTATTTGTTGGT-GCTG-AGAAATGAGAAT-TTCGTTCTACACTT-CATA 234 * ** * * * ** ** ** * *** * * * ** ** * * consensus_7283#0 GTCTTTTTGCTTACATT-TGGAATAATCGTTCACTCATGCAACCGCTTACATCGATTTAT 333 consensus_7283#2 TTTTGGAAGCTTACACAGCGAAATCAGGATATGTTATTGCGACATCCGTTGTTAGCTTCT 356 consensus_7283#1 TTTTGGAAGCTTACACAGCGAAATCAGGATATGTTATTGCGACATCCGTTGTTAGCTTCC 294 * * ******* * *** * * * *** ** * * ** consensus_7283#0 CAAATTAGAGATTCGCTTTCAATGTATGCTCGAAATTCAACTGATAGTTATGTCACAGAT 393 consensus_7283#2 ------------------------------------------------------------ consensus_7283#1 TAATCAATCATCTAATGCACTTCAAAAGCCATGTGAAGAGAATGTGACATTTAATTAAAT 354 consensus_7283#0 CAACAGTCGTCTAATTCAAACGTATCAAAACCAGTCGAGTTATTGAGACCATTATCGATA 453 consensus_7283#2 ------------------------------------------------------------ consensus_7283#1 AAAAGCGAGTAAACTTTCAGCTCAACGATCTTTCTTACAATGATCTAGTGTTTAATTTTT 414 consensus_7283#0 ATCCCCCCTGTGTATGATTTGGATCATATTTGGGTAACGAGTGAGTTGTATTTAAAGACA 513 consensus_7283#2 ------------------------------------------------------------ consensus_7283#1 GTCCC------------------------------------------------------- 419 consensus_7283#0 AATAAAATTACCACCTCAAGCATTATTGACCATAATATTGTGAAGTATTAACAAAACAAA 573 consensus_7283#2 ------------------------------------------------------------ consensus_7283#1 ------------------------------------------------------------ consensus_7283#0 AAGGATAAGATTTCGTTTTTGTGACTTATTAGGT 607 consensus_7283#2 ---------------------------------- consensus_7283#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||