These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 436 fasta sequence [TGTAGACAATAATTTCAATAAGTCAGCGATCGTACCATACAAAAAATAAAAACACACAAGAAGAATATTAGCAAAATATTTATCTTTGTCAACATGCTTGTATATGTAATCCATCTCCATTGGGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAGAAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTTCCTACGGAATGAGTTTTATTTAGAATAAATTAGGAACCAGATTCACATAAACATGATTAACATATACTAAATTTCATGAACATACATCTATAAATTGAAAACTGAGATTATAAGCGTTAAAATGGTCAGATTCTAC] [+] EMBL CD198442 [TGTAGACAATAATTTCAATAAGTCAGCGATCGTACCATACAAAAAATAAAAACACACAAGAAGAATATTAGCAAAATATTTATCTTTGTCAACATGCTTGTATATGTAATCCATCTCCATTGGGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAGAAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTTCCTACGGAATGAGTTTTATTTAGAATAAATTAGGAACCAGATTCACATAAACATGATTAACATATACTAAATTTCATGAACATACATCTATAAATTGAAAACTGAGATTATAAGCGTTAAAATGGTCAGATTCTAC] [-] EMBL CD193739 [ GGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTTCCTACGGAATGAGTTTTATTTAGAATAAATTAGGAACCAGATTCACATAAACATGATTAACATATACTAAATTTCATGA ] consensusID : consensus_7290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 347 fasta sequence [TTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATATTAGCAAAATATTTATCTTTGTCTACATGCTTGTATATGTAATCCATCTCCATTGGGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAGAAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTTCCTACGGAATGAGTTTATTTAGAATAAATTAGGAACCAGATTCACATAAACATGGTTAACATATACTAAT] [+] EMBL AI395215 [TTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATATTAGCAAAATATTTATCTTTGTCTACATGCTTGTATATGTAATCCATCTCCATTGGGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAGAAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTTCCTACGGAATGAGTTTATTTAGAATAAATTAGGAACCAGATTCACATAAACATGGTTAACATATACTAAT] [-] EMBL SMAA33967 [ TTTTTTTTTTTTTTGAATATTAGCAAAATATTTATCTTTGTCTACATGCTTGTATATGTAATCCATCTCCATT GGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAGAAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAAATCGAATACAAGTGACTCCGT ] [+] EMBL SM149 [ TATTTATCTTTGTCTACATGCTTGTATATGTAATCCATCTCCATTGGGTCAATGGGAAAGCGTATTTAANGCAGAAATTTAATGCATGGCGCAGGCGTTACCAGAAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGCAATAAATGAGAAAANTCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTTCCTACGGAATGAGTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7290#0 TGTAGACAATAATTTCAATAAGTCAGCGATCGTACCATACAAAAAATAAAAACACACAAG 60 consensus_7290#1 ---------------------TTTATTTTTTTTTTTTTTTTTTTTTTTTT--TTTTTTTT 37 * * * * * * consensus_7290#0 AAGAATATTAGCAAAATATTTATCTTTGTCAACATGCTTGTATATGTAATCCATCTCCAT 120 consensus_7290#1 TTGAATATTAGCAAAATATTTATCTTTGTCTACATGCTTGTATATGTAATCCATCTCCAT 97 **************************** ***************************** consensus_7290#0 TGGGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAG 180 consensus_7290#1 TGGGTCAATGGGAAAGCGTATTTAAAGCAGAAATTTAATGCATGGCGCAGGCGTTACCAG 157 ************************************************************ consensus_7290#0 AAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGC 240 consensus_7290#1 AAAGAAATAGGCAGAAGTCGAAACTCATAGTTGAGGGCTAAGAAAGACAATACAGGATGC 217 ************************************************************ consensus_7290#0 AATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTT 300 consensus_7290#1 AATAAATGAGAAAAATCGAATACAAGTGACTCCGTACACGTTTCAGTTATGATAGATTTT 277 ************************************************************ consensus_7290#0 CCTACGGAATGAGTTTTATTTAGAATAAATTAGGAACCAGATTCACATAAACATGATTAA 360 consensus_7290#1 CCTACGGAATGAGTTT-ATTTAGAATAAATTAGGAACCAGATTCACATAAACATGGTTAA 336 **************** ************************************** **** consensus_7290#0 CATATACTAAATTTCATGAACATACATCTATAAATTGAAAACTGAGATTATAAGCGTTAA 420 consensus_7290#1 CATATACTAAT------------------------------------------------- 347 ********** consensus_7290#0 AATGGTCAGATTCTAC 436 consensus_7290#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||