These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 799 fasta sequence [GTGGTTGTTCAATGGTATTTGAACATCCTCGTGCCGTAAATGTTATTGCTCTATGCCTCCTTCATCCAAGCTACCAGACAAAAACTTTAGTACTTGAACTTTTAACGGTTGTTTGCCTAATCACCGGTGGACATGAACGTGTATTAAATGCATTTGATAATTTTAAAAAGGAAGTTGGGGAATCTACACGTTTTGAATATTTAATACATTATTTTTTCACACATGAATCTGAATCTTCAGATTATAATATGGATTTTATGGTATCTTGTATGCAGTTTTTCAATATAGTTGTACATTCAACAGATGACATAATGTTAAGAGTGTATTTACAAGAAGAATCTAAACATCTTGGATTAGTTAATTATTTATCGCGAATATACAATCAATCCGGTGATCGTCTTCT-ACGTCAAATAGAAGCATATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATATTACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAACAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGGAAATAAAANATCAAGATTTGGAGGTAAACATTATATATATATGTATACATAGCGTATTCATTGAACACTGTTTCTAAATAATGAGAATATTGAAATATTATTCAGTACTTATCGTATTTTCTACCATATTGATGGTTACAAGTGATCTTTAGATGTTCTGAAAATTTAAGAATATATTACCAGGGTATGCACTTTTCAT] [+] EMBL CD195821 [GTGGTTGTTCAATGGTATTTGAACATCCTCGTGCCGTAAATGTTATTGCTCTATGCCTCCTTCATCCAAGCTACCAGACAAAAACTTTAGTACTTGAACTTTTAACGGTTGTTTGCCTAATCACCGGTGGACATGAACGTGTATTAAATGCATTTGATAATTTTAAAAAGGAAGTTGGGGAATCTACACGTTTTGAATATTTAATACATTATTTTTTCACACATGAATCTGAATCTTCAGATT ] [+] EMBL CD164052 [ TGGACATGAACGTGTATTAAATGCATTTGATAATTTTAAAAAGGAAGTTGGGGAATCTACACGTTTTGAATATTTAATACATTATTTTTTCACACATGAATCTGAATCTTCAGATTATAATATGGATTTTATGGTATCTTGTATGCAGTTTTTCAATATAGTTGTACATTCAACAGATGACATAATGTTAAGAGTGTATTTACAAGAAGAATCTAAACATCTTGGATTAGTTAATTATTTATCGCGAATATACAATCAATCCGGTGATCGTCTTCT ACGTCAAATAGAAGCATATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATATTACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAACAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGGAAATAAAANATCAAGATTTGGAGGTAAACATTATATATATATGTATACATAGCGTATTCATTGAACACTGTTTCTAAATAATGAGAATATTGAAATATTATTCAGTACTTATCGTATTTT ] [-] EMBL CD157354 [ CAATCCGGTGATCTTCTTTTAACGTCAAATAGAAGCATATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATATTACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCGTTTTACAAACTCGTACAGCAACAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGGAAATAAAAAATCAAGATTTGGAGGTAAACATTATATATATATGTATACATAGCGTATTCATTGAACACTGTTTCTAAATAGTGTGAATATTGAAATATTATTCAGTACTTATCGTATTTTCTACCATATTGATGGTTACAAGTGATCTTTAGATGTTCTGAAAATTTAAGAATATATTACCAGGGTATGCACTTTTCAT] consensusID : consensus_7292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 535 fasta sequence [CTGGATGGAAGGCATCTTGGATTAGTTAATTATTTATCGCGAATATACAATCAATCCGGCGATCGTCTTCTACGTCAAATAGAAGCATATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATATTACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAACAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGGAAATAAAAAATCAAGATTTGGAGAATCAGTGCACTAACCAAGATGGTCAACTGTCTACACTACGTGCTCAACTATTGGATAAAGATAAAAGCACAACAGAACGTGAGCGTAATTTACAGCAACGACTACGTGAACTAGAAGATACTTTGAACACAGTTAAAAATTCACAATTGANATCACAGATACAAGTGAATGGCATAGTTGATAACTCTATCGAATCGGTAAACACAACAAGTGTTATTTCTTCTGGTGCTAATGCTCCACCAC] [+] EMBL CD178292 [CTGGATGGAAGGCATCTTGGATTAGTTAATTATTTATCGCGAATATACAATCAATCCGGCGATCGTCTTCTACGTCAAATAGAAGCATATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATATTACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAACAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGGAAATAAAAAATCAAGATTTGGAGAATCAGTGCACTAACCAAGATGGTCAACTGTCTACACTACGTGCTCAACTATTGGATAAAGATAAAAGCACAACAGAACGTGAGCGTAATTTACAGCAACGACTACGTGAACTAGAAGATACTTTGAACACAGTTAAAAATTCACAATTGANATCACAGATACAAGTGAATGGCATAGTTGATAACTCTATCGAATCGGTAAACACAACAAGTGTTATTTCTTCTGGTGCTAATGCTCCACC ] [+] EMBL CD178418 [ TTAGTTAATTATTTATCGCGAATATACAGTCAATCCGGTGATCGTCTTCTACGTCAAATAGAAGCATATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATATTACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAACAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGGAAATAAAAAATCAAGATTTGGAGAATCAGTGCACTAACCAAGATGGTCAACTGTCTACACTACGTGCTCAACTATTGGATAAAGATAAAAGCACAACAGAACGTGAGCGTAATTTACAGCAACGACTACGTGAACTAGAAGATACTTTGAACACAGTTAAAAATTCACAATTGAAATCACAGATACAAGTGAATGGCATAGTTGATAACTCTATCGAATCGGTAAACACAACAAGTGTTATTTCTTCTGGTGCTAATGCNTCACCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7292#0 GTGGTTGTTCAATGGTATTTGAACATCCTCGTGCCGTAAATGTTATTGCTCTATGCCTCC 60 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 TTCATCCAAGCTACCAGACAAAAACTTTAGTACTTGAACTTTTAACGGTTGTTTGCCTAA 120 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 TCACCGGTGGACATGAACGTGTATTAAATGCATTTGATAATTTTAAAAAGGAAGTTGGGG 180 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 AATCTACACGTTTTGAATATTTAATACATTATTTTTTCACACATGAATCTGAATCTTCAG 240 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 ATTATAATATGGATTTTATGGTATCTTGTATGCAGTTTTTCAATATAGTTGTACATTCAA 300 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 CAGATGACATAATGTTAAGAGTGTATTTACAAGAAGAATCTAAACATCTTGGATTAGTTA 360 consensus_7292#1 -----------------------------CTGGATGGA---AGGCATCTTGGATTAGTTA 28 * ** * * * **************** consensus_7292#0 ATTATTTATCGCGAATATACAATCAATCCGGTGATCGTCTTCTACGTCAAATAGAAGCAT 420 consensus_7292#1 ATTATTTATCGCGAATATACAATCAATCCGGCGATCGTCTTCTACGTCAAATAGAAGCAT 88 ******************************* **************************** consensus_7292#0 ATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATAT 480 consensus_7292#1 ATAATGATAATGAAGTAGATGTTGCAGTATTATTAGAAGATTCACAAATGCGTGATATAT 148 ************************************************************ consensus_7292#0 TACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAA 540 consensus_7292#1 TACAACAAGAGAAAGAACAAGCAGAATCAGATCTGATCATTTTACAAACTCGTACAGCAA 208 ************************************************************ consensus_7292#0 CAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGG 600 consensus_7292#1 CAATTCAAGCAGAATATGAAAATAAATTATTACAGCTTCAACAAAACATACAAGCTTTGG 268 ************************************************************ consensus_7292#0 AAATAAAANATCAAGATTTGGAGGTAAACATTATATATATATGTATACATAGC-GTATTC 659 consensus_7292#1 AAATAAAAAATCAAGATTTGGAG--AATCAGTGCACTAACCAAGATGGTCAACTGTCTAC 326 ******** ************** ** ** * * * ** * * ** * * consensus_7292#0 ATTGAACACT--GTTTCTAAATAATGAGAATATTGAAATATTAT-TCAGTACTTATCGTA 716 consensus_7292#1 ACTACGTGCTCAACTATTGGATAAAGATAAAAGCACAACAGAACGTGAGCGTAATTTACA 386 * * ** * * **** ** ** * ** * * * ** * * consensus_7292#0 TTTTCTACCATATTGATGGTTACAAGTGATCTTTAGATGTTCTGAAAATTTAAGAAT-AT 775 consensus_7292#1 GCAACGACTACGTGAAC---TAGAAGATACTTTGAACACAGTTAAAAATTCACAATTGAN 443 * ** * * * ** *** * ** * * ****** * * * * consensus_7292#0 ATTACCAGGGTATGCACTTTTCAT------------------------------------ 799 consensus_7292#1 ATCACAGATACAAGTGAATGGCATAGTTGATAACTCTATCGAATCGGTAAACACAACAAG 503 ** ** * * * *** consensus_7292#0 -------------------------------- consensus_7292#1 TGTTATTTCTTCTGGTGCTAATGCTCCACCAC 535 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||