These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1432 fasta sequence [CGAGGCCATTAATTCGGCACCA-GGTCTATCTATATAAACGACCAATGCTTCATGAGGCACGAAATAAGCAGGAGTTAGTCAAAGATCATGTAGCTGTCAGATTTAATGACATCGAAGTTGAAAATATTGTAACACATGATACTGTCGAAGAACCTCATTGTAAACGGTGTGATGAACCATTTACTGAAGATGAAAATATCGTTTCTGTTAAAGATGACATCTATCATCCAACATGTTTTGTATGTACTCAATGTTTTCAACCATTACCTAACAAAGAATTTTATGAGTTTGAAGGCCGAAGATATTGTAAATATGATTTTCAAGTACTTTTTGCACCTTTGTGTTTTAAATGTGGTGAATTTATCATGTCAAAAGTGGTGAAAGCAATGAATCGAAGCTGGCATCCTGAATGTTTAGTTTGTAATGAATGTGGTATTCAAATTATAAGCAAAGGATTTCAAAGACATAATACAAGAATCCTGTGTAAAGATTGTTGGCCTGTTATATGTCAGGAATTAGTTGGCTGTCATATCTGTCAAACATGTCATAAACCAATTGAATTAAATAAACACATCAAATTTATGGGTGATTTTCATCATCCACATCATTTTCATTGTTTTGATTGTGATCAAGAACTTGGTTTGGATGCACATGAACGTGGTGGTGAATTATATTGTCTTAAATGTTTCAGTCGTTCTGGTGTATCAATCTGCTCAGCATGCAGACGTCCAATTGACGGTCGTATAGTTTGGGCACTTGGTAAAGTTTGGCATGTTGAACATTNTGTATGTCATCACTGTGAAATACCATTTATGGGTAGTAGGGTTTATGAGTGGCAAGGGCACGCCTACTGTCTACTACATTATCAATCTANAATTGGAAGTGTCTGTCATATATGCGCGAAACCGGTTACTGATACATTGGTTAAATTTACTAATAAAATCTATTGCCCTGAACACTTTCTTTGTTCACTGTGTGATAGAAAATTAGATGAAAAATCCAAACTTTATGAAATTGATTTAAAACCAGTTTGTAAAGAATGTTATGATAAGTTACCAATGCAATGGAAAAAAATCCTGGCAAAAATTCATCGTTCAGATAGACAAAAATGGAGTAATTAATGATGATTTGTAATATTCATAGAAATATAACAAATCTACTTTTATATTTGTATACAATCATTTAGGGAAGCTATTTCAAACAGTTGAACTATATTTTTTTTTAAAAAACAAAAACAAACAATCATTTTTATAAACAAATTATATAAGCTACTTTTTAGTAATCTATTCAATGTTTCAACAAAATTTTATTTTCTATAGTATTCTGTATTCAAATTGTATTCATAGTTTTCAATGTCATATACATATATTCTGATTCATCTGTACTACAATTAAAGTAATCGATGAAAATCAAAAAAAAATGTGGAGCGGGC] [+] EMBL CD081509 [CGAGGCCATTAATTCGGCACCA GGTCTATCTATATAAACGACCAATGCTTCATGAGGCACGAAATAAGCAGGAGTTAGTCAAAGATCATGTAGCTGTCAGATTTAATGACATCGAAGTTGAAAATATTGTAACACATGATACTGTCGAAGAACCTCATTGTAAACGGTGTGATGAACCATTTACTGAAGATGAAAATATCGTTTCTGTTAAAGATGACATCTATCATCCAACATGTTTTGTATGTACTCAATGTTTTCAACCATTACCTAACAAAGAATTTTATGAGTTTGAAGGCCGAAGATATTGTAAATATGATTTTCAAGTACTTTTTGCACCTTTGTGTTTTAAATGTGGTGAATTTATCATGTCAAAAGTGGTGAAAGCAATGAATCGAAGCTGGCATCCTGAATGTTTAGTTTGTAATGAATGTGGTATTCAAATTATAAGCAAAGGATTTCAAAGACATAATACAAGAATCCTGTGTAAAGATTGTTGGCCTGTTATATGTCAGGAATTAGTTGGCTGTCATATCTGTCAAACATGTCATAAACCAATTGAATTAAATAAACACATCAAATTTATGGGTGATTTTCATCATCCACATCATTTTCATTGTTTTGATTGTGATCAAGAACTTGGTTTGGATGCACATGAACGTGGTGGTGAATTATATTGTCTTAAATGTTTCAGTCGTTCTGGTGTATCAATCTGCTCAGCATGCAGACGTCCAATTGACGGTCGTATAGTTTGGGCACTTGGTAAAGTTTGGCATGTTGAACATTNTGTATGTCATCACTGTGAAATACCATTTATGGGTAGTAGGGTTTATGAGTGGGCAGGGCACGCCTACTGTCTACTACATTATCAATCTANAATTGGAA ] [+] EMBL CD081673 [ ATTAATTCGGCACGACGGTCTANCTATATAAACGACCAATGCTTCATGAGGCACGAAATAAGCAGGAGTTAGTCAAAGATCATGTAGCTGTCAGATTTAATGACATCGAAGTTGAAAATATTGTAACACATGATACTGTCGAAGAACCTCATTGTAAACGGTGTGATGAACCATTTACTGAAGATGAAAATATCGTTTCTGTTAAAGATGACATCTATCATCCAACATGTTTTGTATGTACTCAATGTTTTCAACCATTACCTAACAAAGAATTTTATGAGTTTGAAGGCCGAAGATATTGTAAATATGATTTTCAAGTACTTTTTGCACCTTTGTGTTTTAAATGTGGTGAATTTATCATGTCAAAAGTGGTGAAAGCAATGAATCGAAGCTGGCATCCTGAATGTTTAGTTTGTAATGAATGTGGTATTCAAATTATAAGCAAAGGATTTCAAAGACATAATACAAGAATCCTGTGTAAAGATTGTTGGCCTGTTATATGTCAGGAATTAGTTGGCTGTCATATCTGTCAAACATGTCATAAACCAATTGAATTAAATAAACACATCAAATTTATGGGTGATTTTCATCATCCACATCATTTTCATTGTTTTGATTGTGATCAAGAACTTGGTTTGGATGCACATGAACGTGGTGGTGAATTATATTGTCTTAAATGTTTCAGTCGTTCTGGTGTATCAATCTGCTCAGCATGCAGACGTCCAATTGACGGTCGTATAGTTTGGGCACTTGGTAAAGTTTGGCATGTTGAACATTNTGTATGTCATCACTGTGAAATACCATTTATGGGTAGTAGGGTTTATGAGTGGCAAGGGCACGCCTACTGTCTACTACATTATCAATCTAANATTGGAAGTGT ] [-] EMBL CD075333 [ GGGTAGTAGGTTTTATGAGTGGCAAGGGCACGCCTACTGTCTACTACATTATCAATCTANAATTGGAAGTGTCTGTCATATATGCGCGAAACCGGTTACTGATACATTGGTTAAATTTACTAATAAAATCTATTGCCCTGAACACTTTCTTTGTTCACTGTGTGATAGAAAATTAGATGAAAAATCCAAACTTTATGAAATTGATTTAAAACCAGTTTGTAAAGAATGTTATGATAAGTTACCAATGCAATGGAAAAAAATCCTGGCAAAAATTCATCGTTCAGATAGACAAAAATGGAGTAATTAATGATGATTTGTAATATTCATAGAAATATAACAAATCTACTTTTATATTTGTATACAATCATTTAGGGAAGCTATTTCAAACAGTTGAACTATATTTTTTTTTAAAAAACAAAAACAAACAATCATTTTTATAAACAAATTATATAAGCTACTTTTTAGTAATCTATTCAATGTTTCAACAAAATTTTATTTTCTATAGTATTCTGTATTCAAATTGTATTCATAGTTTTCAATGTCATATACATATATTCTGATTCATCTGTACTACAATTAAAGTAATCGATGAAAATCAAAAAAAAATGTGGAGCGGGC] [-] EMBL BF936214 [ ATGAAATTGATTTAAAACCAGTTTGTAAAGAATGTTATGATAAGTTACCAATGCAATGGAAAAAAATCCTGGCAAAAATCCATCGTTCAGATAGACAAAAATGGAGTAATTAATGATGATTTGTAATATTCATAGAAATATAACAAACCTACTTTTATATTTGTATACAATCATTTAGGGAAGCTATTTCAAACAGTTGAACTATATTTTTTTTTAAAAAACAAAAACAAACAATCATTTTTATAAACAAATTATATAAACTACTTTTTAGTAATCTATTCAATGTTTCAACAAAATTTTATTTTCTATAGTATTCTGTATTCAAATTGTATTCATAGTTTTCAATGTCATATACATATATTCTGATTCATCTGTACTACAATTAAAGTAATCGATGAAAATCA ] consensusID : consensus_7307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 173 fasta sequence [AATAAATACTGGGATGCACACATAAAATGTTTCTAATTAATGAAATTTTTATTTTCAATAACATTTCCTCCACTTTTTTCATTCAACTCTGAAGATGTACTCAATGTTTTCAACCATTACCTAACANAGATTTTATGAGTTTGAAGGCCGAGATATTGTAATATGATTTTCAA] [+] EMBL CD077481 [AATAAATACTGGGATGCACACATAAAATGTTTCTAATTAATGAAATTTTTATTTTCAATAACATTTCCTCCACTTTTTTCATTCAACTCTGAAGATGTACTCAATGTTTTCAACCATTACCTAACANAGATTTTATGAGTTTGAAGGCCGAGATATTGTAATATGATTTTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7307#0 CGAGGCCATTAATTCGGCACCAGGTCTATCTATATAAACGACCAATGCTTCATGAGGCAC 60 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 GAAATAAGCAGGAGTTAGTCAAAGATCATGTAGCTGTCAGATTTAATGACATCGAAGTTG 120 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 AAAATATTGTAACACATGATACTGTCGAAGAACCTCATTGTAAACGGTGTGATGAACCAT 180 consensus_7307#1 --------------------------AATAAATACTGGGATGCACAC----ATAAAATGT 30 * ** * ** ** ** * consensus_7307#0 TTACTGAAGATGAAAATATCGTTTCTGTTAAAGATG-----ACATCTATCATCCAACATG 235 consensus_7307#1 TTCTAATTAATGAAATTTTTATTTTCAATAACATTTCCTCCACTTTTTTCATTCAACTC- 89 ** ****** * * *** *** * ** * * **** **** consensus_7307#0 TTTTGTATGTACTCAATGTTTTCAACCATTACCTAACAAAGAATTTTATGAGTTTGAAGG 295 consensus_7307#1 -TGAAGATGTACTCAATGTTTTCAACCATTACCTAACANAGA-TTTTATGAGTTTGAAGG 147 * ******************************** *** ***************** consensus_7307#0 CCGAAGATATTGTAAATATGATTTTCAAGTACTTTTTGCACCTTTGTGTTTTAAATGTGG 355 consensus_7307#1 CCGA-GATATTGTAA-TATGATTTTCAA-------------------------------- 173 **** ********** ************ consensus_7307#0 TGAATTTATCATGTCAAAAGTGGTGAAAGCAATGAATCGAAGCTGGCATCCTGAATGTTT 415 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 AGTTTGTAATGAATGTGGTATTCAAATTATAAGCAAAGGATTTCAAAGACATAATACAAG 475 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 AATCCTGTGTAAAGATTGTTGGCCTGTTATATGTCAGGAATTAGTTGGCTGTCATATCTG 535 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 TCAAACATGTCATAAACCAATTGAATTAAATAAACACATCAAATTTATGGGTGATTTTCA 595 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 TCATCCACATCATTTTCATTGTTTTGATTGTGATCAAGAACTTGGTTTGGATGCACATGA 655 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 ACGTGGTGGTGAATTATATTGTCTTAAATGTTTCAGTCGTTCTGGTGTATCAATCTGCTC 715 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 AGCATGCAGACGTCCAATTGACGGTCGTATAGTTTGGGCACTTGGTAAAGTTTGGCATGT 775 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 TGAACATTNTGTATGTCATCACTGTGAAATACCATTTATGGGTAGTAGGGTTTATGAGTG 835 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 GCAAGGGCACGCCTACTGTCTACTACATTATCAATCTANAATTGGAAGTGTCTGTCATAT 895 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 ATGCGCGAAACCGGTTACTGATACATTGGTTAAATTTACTAATAAAATCTATTGCCCTGA 955 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 ACACTTTCTTTGTTCACTGTGTGATAGAAAATTAGATGAAAAATCCAAACTTTATGAAAT 1015 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 TGATTTAAAACCAGTTTGTAAAGAATGTTATGATAAGTTACCAATGCAATGGAAAAAAAT 1075 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 CCTGGCAAAAATTCATCGTTCAGATAGACAAAAATGGAGTAATTAATGATGATTTGTAAT 1135 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 ATTCATAGAAATATAACAAATCTACTTTTATATTTGTATACAATCATTTAGGGAAGCTAT 1195 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 TTCAAACAGTTGAACTATATTTTTTTTTAAAAAACAAAAACAAACAATCATTTTTATAAA 1255 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 CAAATTATATAAGCTACTTTTTAGTAATCTATTCAATGTTTCAACAAAATTTTATTTTCT 1315 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 ATAGTATTCTGTATTCAAATTGTATTCATAGTTTTCAATGTCATATACATATATTCTGAT 1375 consensus_7307#1 ------------------------------------------------------------ consensus_7307#0 TCATCTGTACTACAATTAAAGTAATCGATGAAAATCAAAAAAAAATGTGGAGCGGGC 1432 consensus_7307#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||