cluster # 7309

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7309 cluster # 7309 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7309#0 length = 1101 sequences # 4

consensus_7309#1 length = 598 sequences # 1

consensusID : consensus_7309#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1101
fasta sequence

                              [CCCTCCNAGGCCAANAATTCGGCACGAGGATGACTAATAAATCTTCCACTGATGCTGGGAATAATTCAAGTCAGACATCATCATCTTCATCAGGTCCATCGCTATCAGATGGTAGTTCAAAGTATGAATTATTCGCTTTTATTAGTCATATGGGAAAGTCGACCAATGATGGTCATTACGTAGCTCATATTAAACGATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATCATGTTGGCTCACCAATTTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGAATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCAGTCTGACTAACTCTAACTGCGTATGTGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCACCCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGTTCTTTTTTCTCATTCACTGTCTCCACTTATCTTCCATTCTTATTTTAAACTACATCACAGAAATGCATCAAGTTGTACACATTATGAATTTAGAAAACCTGCTCTTGTGTGTGTGTGTGTGTGTGTGTAGAAATGACAAATCGCTATTGTTCCTTCTTCATGTTAATACAGTACAATAACCTATTCAAAAGTATAACACATTAGCTTTCTCCATTCCCTTATTACATTTATGCGTTCATTCATTATTATTTCTCATCTTCAGTTTATCGTCTTGAGTTTATCATGTTGTAAAAAACAAGTACAAACAGTAAACCAGATTATATTGATATAATTCTTGAATACATTTTTTTAATCAAACTAAACTTGGTAACAAAA---AAA-TATATAACATACAGATATAATATACACACGTACACAAACAAACACAAATACAAATACTACCTCTTTTCTGTCTATATATTCCATTCATAAACGAATAACACATTGTTTTTATTGAATTATTTACATCGTATAAATTGGATTGTACGTGTTTTGATTATATATGACTTACTCGTTGTTAATGATCATTGTTACTAACTGTATTGTTATGCAATTTTGAAAGATATCATGAATAATAAAAGTAAACACTTT]

[+] EMBL CD082626             [CCCTCCNAGGCCAANAATTCGGCACGAGGATGACTAATAAATCTTCCACTGATGCTGGGAATAATTCAAGTCAGACATCATCATCTTCATCAGGTCCATCGCTATCAGATGGTAGTTCAAAGTATGAATTATTCGCTTTTATTAGTCATATGGGAAAGTCGACCAATGATGGTCATTACGTAGCTCATATTAAACGATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATCATGTTGGCTCACCAATTTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGAATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCAGTCTGACTAACTCTAACTGCGTATGTGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCACCCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGTTCTTTTTTCTCATTCACTGTCTCCACTTATCTTCCATTCTTATTTTAAACTACATCACAGAAATGCATCAAGTTGTACACATTATGAATTTAGAAAACCTGCTCTTGTGTGTGTGTGTGTGTGTGTGTAGAAATGACAAATCGCTATTGTTCCTTCTTCATGTTAATACAGTACAATAACCTATTCAAAAGTATAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD196641             [                                                                                                                    TCAAAGTATGAATTATTCGCTTTTATTAGTCATATGGGAAAGTCGACCAATGATGGTCATTACGTAGCTCATATTAAACGATCATTTCTAGCTAAATGTATTCCCCATGAACCGCCAGTATATCATGTTGGCTCACCGATTTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGAATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCAGTCTGACTAACTCTAACTGCGTATGTGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCACCCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGTTCTTTTTTCTCATTCACTGTCTCCACTTATCTTCCATTCTTATTTTAAACTACATCACAGAAATGCATCAAGTTGTACACATTATGAATTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD073305             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATTCTTATTTTAAACTGCATCACAGAAATGCATTAAGTTGTACACATTATGAATTTAGAAAACCTGCTCTTGTGTG CT TGTGCGTGTGTGTAGAAATGACAAATCGATATTGTTCCTTCTTCATGTTAATACAGTACAATAACCTATTCAAAAGTATAACACATTAGCTTTCTCCATTCCCTTATTACATTTATGCGTTCATTCATTATTATTTCTCATCTTCAGTTTATCGTCTTGAGTTTATCATGTTGTAAAAAACAAGTACAAACAGTAAACCAGATTATATTGATATAATTCTTGAATACATTTTTTTAATCAAACTAAACTTGGTAACAAAAAAGAAAGTATATAACATACAGATATAATATACACACGTACACAAACAAACACAAATACAAATACTACCTCTTTTCTGTCTATATATTCCATTCATAAACGAATAACACATTGTTTTTATTGAATTATTTACATCGTATAAATTGGATTGTACGTGTTTTGATTATATATGACTTACTCGTTGTTAATGATCATTGTTACTAACTGTATTGTTATGCAATTTTGAAAGATATCATGAATAATAAAAGTAAACACTTT]
[-] EMBL CD076222             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTACATCACAGAAATGCATCAAGTTGTACACATTATGAATTTAGAAAACCTGCTCTTGTGTGTGTGTGTGTGTGTGTGTAAAAATGACAAATCGCTATTGTTCCTTCTTCATGTTAATACAGTACAATAACCTATTCAAAAGTATAACACATTAGCTTTCTCCATTCCCTTATTACATTTATGCGTTCATTCATTATTATTTCTCATCTTGAGTTTATCGTCTTGAGTTTATCATGTTGTAAAAAACAAGTACAAACAGTAAACCCGACTATATTGATATAATTCTTGAATACATTTTTTTAATCAAACTAAACTTGGTAACAAAA   AAA TCTATAACATACAGATATAATATACACACGTACACAAACAAACACAAATACAAATACTACCTCTTTTCTGTCTATATATTCCATTCATAAACGAATAACACATTGTTTTTATTGAATTATTTACATCGTATAAAATGGATTGTACGTGTTTTGATTATATATAACTTACTCGTTGTTAATGATCATTGTTATTAACTATGATGTTATGTAATTTTAAAGGATATCATGAATAATAAAAGTAAACAC   ]




>consensus_7309#0
CCCTCCNAGGCCAANAATTCGGCACGAGGATGACTAATAAATCTTCCACTGATGCTGGGA
ATAATTCAAGTCAGACATCATCATCTTCATCAGGTCCATCGCTATCAGATGGTAGTTCAA
AGTATGAATTATTCGCTTTTATTAGTCATATGGGAAAGTCGACCAATGATGGTCATTACG
TAGCTCATATTAAACGATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATC
ATGTTGGCTCACCAATTTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGA
AAGTAGCAAAAAGTGAATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGAT
TAGATGCTACTGATCAGTCTGACTAACTCTAACTGCGTATGTGTGTGTGTCGGAGGGGTG
AGGCAGTTGAGGTCACCCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGTTCTTTT
TTCTCATTCACTGTCTCCACTTATCTTCCATTCTTATTTTAAACTACATCACAGAAATGC
ATCAAGTTGTACACATTATGAATTTAGAAAACCTGCTCTTGTGTGTGTGTGTGTGTGTGT
GTAGAAATGACAAATCGCTATTGTTCCTTCTTCATGTTAATACAGTACAATAACCTATTC
AAAAGTATAACACATTAGCTTTCTCCATTCCCTTATTACATTTATGCGTTCATTCATTAT
TATTTCTCATCTTCAGTTTATCGTCTTGAGTTTATCATGTTGTAAAAAACAAGTACAAAC
AGTAAACCAGATTATATTGATATAATTCTTGAATACATTTTTTTAATCAAACTAAACTTG
GTAACAAAAAAATATATAACATACAGATATAATATACACACGTACACAAACAAACACAAA
TACAAATACTACCTCTTTTCTGTCTATATATTCCATTCATAAACGAATAACACATTGTTT
TTATTGAATTATTTACATCGTATAAATTGGATTGTACGTGTTTTGATTATATATGACTTA
CTCGTTGTTAATGATCATTGTTACTAACTGTATTGTTATGCAATTTTGAAAGATATCATG
AATAATAAAAGTAAACACTTT

consensusID : consensus_7309#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [GGAACAAGCTGCTGACTGGGCGTTGAGTAGTCCAGATGAATTAGAAACTTTATTACTTCAGTCTGAAATAAATATGACTAATAAATCTTCCACTGATGCTGGGAATAATTCAAGTCAGACATCATCATCTTCATCAGGTCTATCGCTATCAGATGGTAGTTCAAAGTATGAATTATTCGCTTTTATTAGTCATATGGGAAAATCGACCAATGATGGTCATTATGTAGCTCATATTAAACGATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATCATGTTGGCTCACCAATTTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGAATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCAGTCTGACTAACTCTAACTGCGTATATGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCACCCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGGTCTATTTTCTCATTCACTGTCTCCACTTATCTTCCATTCTTATTTTANACTGCATCACAGAAATGCATTAAGTTGTACAC]

[+] EMBL CD078844             [GGAACAAGCTGCTGACTGGGCGTTGAGTAGTCCAGATGAATTAGAAACTTTATTACTTCAGTCTGAAATAAATATGACTAATAAATCTTCCACTGATGCTGGGAATAATTCAAGTCAGACATCATCATCTTCATCAGGTCTATCGCTATCAGATGGTAGTTCAAAGTATGAATTATTCGCTTTTATTAGTCATATGGGAAAATCGACCAATGATGGTCATTATGTAGCTCATATTAAACGATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATCATGTTGGCTCACCAATTTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGAATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCAGTCTGACTAACTCTAACTGCGTATATGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCACCCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGGTCTATTTTCTCATTCACTGTCTCCACTTATCTTCCATTCTTATTTTANACTGCATCACAGAAATGCATTAAGTTGTACAC]




>consensus_7309#1
GGAACAAGCTGCTGACTGGGCGTTGAGTAGTCCAGATGAATTAGAAACTTTATTACTTCA
GTCTGAAATAAATATGACTAATAAATCTTCCACTGATGCTGGGAATAATTCAAGTCAGAC
ATCATCATCTTCATCAGGTCTATCGCTATCAGATGGTAGTTCAAAGTATGAATTATTCGC
TTTTATTAGTCATATGGGAAAATCGACCAATGATGGTCATTATGTAGCTCATATTAAACG
ATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATCATGTTGGCTCACCAAT
TTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGA
ATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCA
GTCTGACTAACTCTAACTGCGTATATGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCAC
CCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGGTCTATTTTCTCATTCACTGTCT
CCACTTATCTTCCATTCTTATTTTANACTGCATCACAGAAATGCATTAAGTTGTACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7309#0      --------------------------------------------CCCTCCNAGGCCAANA 16
consensus_7309#1      GGAACAAGCTGCTGACTGGGCGTTGAGTAGTCCAGATGAATTAGAAACTTTATTACTTCA 60
                                                                         *   *   *

consensus_7309#0      ATTCGGCACGAGGATGACTAATAAATCTTCCACTGATGCTGGGAATAATTCAAGTCAGAC 76
consensus_7309#1      GTCTGAAATAAATATGACTAATAAATCTTCCACTGATGCTGGGAATAATTCAAGTCAGAC 120
                       *  *  *  *  ***********************************************

consensus_7309#0      ATCATCATCTTCATCAGGTCCATCGCTATCAGATGGTAGTTCAAAGTATGAATTATTCGC 136
consensus_7309#1      ATCATCATCTTCATCAGGTCTATCGCTATCAGATGGTAGTTCAAAGTATGAATTATTCGC 180
                      ******************** ***************************************

consensus_7309#0      TTTTATTAGTCATATGGGAAAGTCGACCAATGATGGTCATTACGTAGCTCATATTAAACG 196
consensus_7309#1      TTTTATTAGTCATATGGGAAAATCGACCAATGATGGTCATTATGTAGCTCATATTAAACG 240
                      ********************* ******************** *****************

consensus_7309#0      ATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATCATGTTGGCTCACCAAT 256
consensus_7309#1      ATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATCATGTTGGCTCACCAAT 300
                      ************************************************************

consensus_7309#0      TTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGA 316
consensus_7309#1      TTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGA 360
                      ************************************************************

consensus_7309#0      ATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCA 376
consensus_7309#1      ATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCA 420
                      ************************************************************

consensus_7309#0      GTCTGACTAACTCTAACTGCGTATGTGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCAC 436
consensus_7309#1      GTCTGACTAACTCTAACTGCGTATATGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCAC 480
                      ************************ ***********************************

consensus_7309#0      CCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGTTCTTTTTTCTCATTCACTGTCT 496
consensus_7309#1      CCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGGTCTATTTTCTCATTCACTGTCT 540
                      ************************************* *** ******************

consensus_7309#0      CCACTTATCTTCCATTCTTATTTTAAACTACATCACAGAAATGCATCAAGTTGTACACAT 556
consensus_7309#1      CCACTTATCTTCCATTCTTATTTTANACTGCATCACAGAAATGCATTAAGTTGTACAC-- 598
                      ************************* *** **************** ***********  

consensus_7309#0      TATGAATTTAGAAAACCTGCTCTTGTGTGTGTGTGTGTGTGTGTGTAGAAATGACAAATC 616
consensus_7309#1      ------------------------------------------------------------
                                                                                  

consensus_7309#0      GCTATTGTTCCTTCTTCATGTTAATACAGTACAATAACCTATTCAAAAGTATAACACATT 676
consensus_7309#1      ------------------------------------------------------------
                                                                                  

consensus_7309#0      AGCTTTCTCCATTCCCTTATTACATTTATGCGTTCATTCATTATTATTTCTCATCTTCAG 736
consensus_7309#1      ------------------------------------------------------------
                                                                                  

consensus_7309#0      TTTATCGTCTTGAGTTTATCATGTTGTAAAAAACAAGTACAAACAGTAAACCAGATTATA 796
consensus_7309#1      ------------------------------------------------------------
                                                                                  

consensus_7309#0      TTGATATAATTCTTGAATACATTTTTTTAATCAAACTAAACTTGGTAACAAAAAAATATA 856
consensus_7309#1      ------------------------------------------------------------
                                                                                  

consensus_7309#0      TAACATACAGATATAATATACACACGTACACAAACAAACACAAATACAAATACTACCTCT 916
consensus_7309#1      ------------------------------------------------------------
                                                                                  

consensus_7309#0      TTTCTGTCTATATATTCCATTCATAAACGAATAACACATTGTTTTTATTGAATTATTTAC 976
consensus_7309#1      ------------------------------------------------------------
                                                                                  

consensus_7309#0      ATCGTATAAATTGGATTGTACGTGTTTTGATTATATATGACTTACTCGTTGTTAATGATC 1036
consensus_7309#1      ------------------------------------------------------------
                                                                                  

consensus_7309#0      ATTGTTACTAACTGTATTGTTATGCAATTTTGAAAGATATCATGAATAATAAAAGTAAAC 1096
consensus_7309#1      ------------------------------------------------------------
                                                                                  

consensus_7309#0      ACTTT 1101
consensus_7309#1      -----