These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7309#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1101 fasta sequence [CCCTCCNAGGCCAANAATTCGGCACGAGGATGACTAATAAATCTTCCACTGATGCTGGGAATAATTCAAGTCAGACATCATCATCTTCATCAGGTCCATCGCTATCAGATGGTAGTTCAAAGTATGAATTATTCGCTTTTATTAGTCATATGGGAAAGTCGACCAATGATGGTCATTACGTAGCTCATATTAAACGATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATCATGTTGGCTCACCAATTTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGAATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCAGTCTGACTAACTCTAACTGCGTATGTGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCACCCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGTTCTTTTTTCTCATTCACTGTCTCCACTTATCTTCCATTCTTATTTTAAACTACATCACAGAAATGCATCAAGTTGTACACATTATGAATTTAGAAAACCTGCTCTTGTGTGTGTGTGTGTGTGTGTGTAGAAATGACAAATCGCTATTGTTCCTTCTTCATGTTAATACAGTACAATAACCTATTCAAAAGTATAACACATTAGCTTTCTCCATTCCCTTATTACATTTATGCGTTCATTCATTATTATTTCTCATCTTCAGTTTATCGTCTTGAGTTTATCATGTTGTAAAAAACAAGTACAAACAGTAAACCAGATTATATTGATATAATTCTTGAATACATTTTTTTAATCAAACTAAACTTGGTAACAAAA---AAA-TATATAACATACAGATATAATATACACACGTACACAAACAAACACAAATACAAATACTACCTCTTTTCTGTCTATATATTCCATTCATAAACGAATAACACATTGTTTTTATTGAATTATTTACATCGTATAAATTGGATTGTACGTGTTTTGATTATATATGACTTACTCGTTGTTAATGATCATTGTTACTAACTGTATTGTTATGCAATTTTGAAAGATATCATGAATAATAAAAGTAAACACTTT] [+] EMBL CD082626 [CCCTCCNAGGCCAANAATTCGGCACGAGGATGACTAATAAATCTTCCACTGATGCTGGGAATAATTCAAGTCAGACATCATCATCTTCATCAGGTCCATCGCTATCAGATGGTAGTTCAAAGTATGAATTATTCGCTTTTATTAGTCATATGGGAAAGTCGACCAATGATGGTCATTACGTAGCTCATATTAAACGATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATCATGTTGGCTCACCAATTTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGAATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCAGTCTGACTAACTCTAACTGCGTATGTGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCACCCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGTTCTTTTTTCTCATTCACTGTCTCCACTTATCTTCCATTCTTATTTTAAACTACATCACAGAAATGCATCAAGTTGTACACATTATGAATTTAGAAAACCTGCTCTTGTGTGTGTGTGTGTGTGTGTGTAGAAATGACAAATCGCTATTGTTCCTTCTTCATGTTAATACAGTACAATAACCTATTCAAAAGTATAAC ] [-] EMBL CD196641 [ TCAAAGTATGAATTATTCGCTTTTATTAGTCATATGGGAAAGTCGACCAATGATGGTCATTACGTAGCTCATATTAAACGATCATTTCTAGCTAAATGTATTCCCCATGAACCGCCAGTATATCATGTTGGCTCACCGATTTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGAATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCAGTCTGACTAACTCTAACTGCGTATGTGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCACCCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGTTCTTTTTTCTCATTCACTGTCTCCACTTATCTTCCATTCTTATTTTAAACTACATCACAGAAATGCATCAAGTTGTACACATTATGAATTTA ] [-] EMBL CD073305 [ ATTCTTATTTTAAACTGCATCACAGAAATGCATTAAGTTGTACACATTATGAATTTAGAAAACCTGCTCTTGTGTG CT TGTGCGTGTGTGTAGAAATGACAAATCGATATTGTTCCTTCTTCATGTTAATACAGTACAATAACCTATTCAAAAGTATAACACATTAGCTTTCTCCATTCCCTTATTACATTTATGCGTTCATTCATTATTATTTCTCATCTTCAGTTTATCGTCTTGAGTTTATCATGTTGTAAAAAACAAGTACAAACAGTAAACCAGATTATATTGATATAATTCTTGAATACATTTTTTTAATCAAACTAAACTTGGTAACAAAAAAGAAAGTATATAACATACAGATATAATATACACACGTACACAAACAAACACAAATACAAATACTACCTCTTTTCTGTCTATATATTCCATTCATAAACGAATAACACATTGTTTTTATTGAATTATTTACATCGTATAAATTGGATTGTACGTGTTTTGATTATATATGACTTACTCGTTGTTAATGATCATTGTTACTAACTGTATTGTTATGCAATTTTGAAAGATATCATGAATAATAAAAGTAAACACTTT] [-] EMBL CD076222 [ CTACATCACAGAAATGCATCAAGTTGTACACATTATGAATTTAGAAAACCTGCTCTTGTGTGTGTGTGTGTGTGTGTGTAAAAATGACAAATCGCTATTGTTCCTTCTTCATGTTAATACAGTACAATAACCTATTCAAAAGTATAACACATTAGCTTTCTCCATTCCCTTATTACATTTATGCGTTCATTCATTATTATTTCTCATCTTGAGTTTATCGTCTTGAGTTTATCATGTTGTAAAAAACAAGTACAAACAGTAAACCCGACTATATTGATATAATTCTTGAATACATTTTTTTAATCAAACTAAACTTGGTAACAAAA AAA TCTATAACATACAGATATAATATACACACGTACACAAACAAACACAAATACAAATACTACCTCTTTTCTGTCTATATATTCCATTCATAAACGAATAACACATTGTTTTTATTGAATTATTTACATCGTATAAAATGGATTGTACGTGTTTTGATTATATATAACTTACTCGTTGTTAATGATCATTGTTATTAACTATGATGTTATGTAATTTTAAAGGATATCATGAATAATAAAAGTAAACAC ] consensusID : consensus_7309#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [GGAACAAGCTGCTGACTGGGCGTTGAGTAGTCCAGATGAATTAGAAACTTTATTACTTCAGTCTGAAATAAATATGACTAATAAATCTTCCACTGATGCTGGGAATAATTCAAGTCAGACATCATCATCTTCATCAGGTCTATCGCTATCAGATGGTAGTTCAAAGTATGAATTATTCGCTTTTATTAGTCATATGGGAAAATCGACCAATGATGGTCATTATGTAGCTCATATTAAACGATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATCATGTTGGCTCACCAATTTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGAATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCAGTCTGACTAACTCTAACTGCGTATATGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCACCCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGGTCTATTTTCTCATTCACTGTCTCCACTTATCTTCCATTCTTATTTTANACTGCATCACAGAAATGCATTAAGTTGTACAC] [+] EMBL CD078844 [GGAACAAGCTGCTGACTGGGCGTTGAGTAGTCCAGATGAATTAGAAACTTTATTACTTCAGTCTGAAATAAATATGACTAATAAATCTTCCACTGATGCTGGGAATAATTCAAGTCAGACATCATCATCTTCATCAGGTCTATCGCTATCAGATGGTAGTTCAAAGTATGAATTATTCGCTTTTATTAGTCATATGGGAAAATCGACCAATGATGGTCATTATGTAGCTCATATTAAACGATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATCATGTTGGCTCACCAATTTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGAATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCAGTCTGACTAACTCTAACTGCGTATATGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCACCCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGGTCTATTTTCTCATTCACTGTCTCCACTTATCTTCCATTCTTATTTTANACTGCATCACAGAAATGCATTAAGTTGTACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7309#0 --------------------------------------------CCCTCCNAGGCCAANA 16 consensus_7309#1 GGAACAAGCTGCTGACTGGGCGTTGAGTAGTCCAGATGAATTAGAAACTTTATTACTTCA 60 * * * consensus_7309#0 ATTCGGCACGAGGATGACTAATAAATCTTCCACTGATGCTGGGAATAATTCAAGTCAGAC 76 consensus_7309#1 GTCTGAAATAAATATGACTAATAAATCTTCCACTGATGCTGGGAATAATTCAAGTCAGAC 120 * * * * *********************************************** consensus_7309#0 ATCATCATCTTCATCAGGTCCATCGCTATCAGATGGTAGTTCAAAGTATGAATTATTCGC 136 consensus_7309#1 ATCATCATCTTCATCAGGTCTATCGCTATCAGATGGTAGTTCAAAGTATGAATTATTCGC 180 ******************** *************************************** consensus_7309#0 TTTTATTAGTCATATGGGAAAGTCGACCAATGATGGTCATTACGTAGCTCATATTAAACG 196 consensus_7309#1 TTTTATTAGTCATATGGGAAAATCGACCAATGATGGTCATTATGTAGCTCATATTAAACG 240 ********************* ******************** ***************** consensus_7309#0 ATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATCATGTTGGCTCACCAAT 256 consensus_7309#1 ATCATTTCTAGCTAAATGTATTCCTCATGAACCGCCAGTATATCATGTTGGCTCACCAAT 300 ************************************************************ consensus_7309#0 TTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGA 316 consensus_7309#1 TTGTGGCGGTTCCGATCAAGAATGGATTATATTCAATGATGAGAAAGTAGCAAAAAGTGA 360 ************************************************************ consensus_7309#0 ATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCA 376 consensus_7309#1 ATGCCCTCCACATCGTCATGCTTATTTATATTTCTTTCGAAGATTAGATGCTACTGATCA 420 ************************************************************ consensus_7309#0 GTCTGACTAACTCTAACTGCGTATGTGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCAC 436 consensus_7309#1 GTCTGACTAACTCTAACTGCGTATATGTGTGTGTCGGAGGGGTGAGGCAGTTGAGGTCAC 480 ************************ *********************************** consensus_7309#0 CCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGTTCTTTTTTCTCATTCACTGTCT 496 consensus_7309#1 CCAAACAGTTTAGTGTTAAAAAATGATAGATTTATTGGTCTATTTTCTCATTCACTGTCT 540 ************************************* *** ****************** consensus_7309#0 CCACTTATCTTCCATTCTTATTTTAAACTACATCACAGAAATGCATCAAGTTGTACACAT 556 consensus_7309#1 CCACTTATCTTCCATTCTTATTTTANACTGCATCACAGAAATGCATTAAGTTGTACAC-- 598 ************************* *** **************** *********** consensus_7309#0 TATGAATTTAGAAAACCTGCTCTTGTGTGTGTGTGTGTGTGTGTGTAGAAATGACAAATC 616 consensus_7309#1 ------------------------------------------------------------ consensus_7309#0 GCTATTGTTCCTTCTTCATGTTAATACAGTACAATAACCTATTCAAAAGTATAACACATT 676 consensus_7309#1 ------------------------------------------------------------ consensus_7309#0 AGCTTTCTCCATTCCCTTATTACATTTATGCGTTCATTCATTATTATTTCTCATCTTCAG 736 consensus_7309#1 ------------------------------------------------------------ consensus_7309#0 TTTATCGTCTTGAGTTTATCATGTTGTAAAAAACAAGTACAAACAGTAAACCAGATTATA 796 consensus_7309#1 ------------------------------------------------------------ consensus_7309#0 TTGATATAATTCTTGAATACATTTTTTTAATCAAACTAAACTTGGTAACAAAAAAATATA 856 consensus_7309#1 ------------------------------------------------------------ consensus_7309#0 TAACATACAGATATAATATACACACGTACACAAACAAACACAAATACAAATACTACCTCT 916 consensus_7309#1 ------------------------------------------------------------ consensus_7309#0 TTTCTGTCTATATATTCCATTCATAAACGAATAACACATTGTTTTTATTGAATTATTTAC 976 consensus_7309#1 ------------------------------------------------------------ consensus_7309#0 ATCGTATAAATTGGATTGTACGTGTTTTGATTATATATGACTTACTCGTTGTTAATGATC 1036 consensus_7309#1 ------------------------------------------------------------ consensus_7309#0 ATTGTTACTAACTGTATTGTTATGCAATTTTGAAAGATATCATGAATAATAAAAGTAAAC 1096 consensus_7309#1 ------------------------------------------------------------ consensus_7309#0 ACTTT 1101 consensus_7309#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||