These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1090 fasta sequence [AGGGGTATAGTCCATCACTAAATATGTGCATCCCTGTTTGATACGGATCTAGAATACCGCCCGGATCCATCGCCTCATTTTATACAGTATCCTATACAGTTACAAATATTGCCAGTACGTGATCGCAAACTCCACGGTAACCATTTTGCGAGGCAGGGGTACCAATTACTACGAAGGAAACTTGTTGACGCACAGCTGAGCTATGTCAAGGC-ACACCACTTGGTTTAACAGCCAAATCAGAAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATATAGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTTGTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAGGTTCGTAAGGACCCAAAAATCATCTGGCAACCAAGTTAAATTGTTGCTGCTCAAATCAATAAGTTCCAGGGTTTTAGTCAGTGGTGAGCTTTCGGAAATTGATGGCCATCTTGTGATGTGGTTTTTACATAAACACAAATGAGCCATATTGAGGTTTTGTACTTCTTGAGGAATTTTTTCCAGTAAATTATCACTCAAGTCAAGGAAGCGCAGACTGTATAGTTTG-AGAAGTCTTGTATCAAACTGACGCAACCTCAATCCTGCTGCAACTACTTCATGCAGAGATATACTGAAGCCTTGAGAAAAAGGATAGTCTTCTCGTTTTGTTATAACTAGCCGGCGATGACCTACTTTCCGAATTTCATTTGTAGCAGGCCTGTTGCTGAGGATTCCAATGGGTATTTTGTTACCTGATTTTATAAGGTTTAAAATTTTTACCAGCTTCATCAAATCCGAGAGTTCAGCCTGATGAATCATTATAAATTTAGGGGGGATTTTCAGACGGATCGTCAGGTTTCCTTCTTTAACATGCTTGGTGAATAGCCTTTCAATGTTTGCTGAGATTNTGAATTTCCGACACGTATTTGAGGAAGATTCAGTGATGAAAATAATGGCATCTCCATTTTCATCGCNAAGTGATAAGACACTTTGCTTAGNTTACATCTACTACGA] [+] EMBL CD147499 [AGGGGTATAGTCCATCACTAAATATGTGCATCCCTGTTTGATACGGATCTAGAATACCGCCCGGATCCATCGCCTCATTTTATACAGTATCCTATACAGTTACAAATATTGCCAGTACGTGATCGCAAACTCCACGGTAACCATTTTGCGAGGCAGGGGTACCAATTACTACGAAGGAAACTTGTTGACGCACAGCTGAGCTATGTCAAGGCAACACCACTTGGTTTAACAGCCAAATCAGAAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATATAGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTTGTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAGGTTCGTAAGGACCCAAAAATCATCTGGCAACCAAGTTAAATTGTTGCTGCTCCAATCAATAA ] [-] EMBL CD194018 [ AGCTGAGCAATGTCAAGGC ACACCACTTTGTTTTACAGCCAAATCAGATGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATATAGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTTGTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTCGAAAGGTTGACGTTCCTAAGGTTCGTAAGGACCCAAAAATCATCTGGCAACCAAGTTAAATTGTTGCTGCTCAAATCAATAAGTTCCAGGGTTCTAGTCAGTGGTGAGCTTTCGGAAATTGACGGCCATCTTGTGATGTGGTTTTTACATAAACACAAATGAGCCATATTGA ] [+] EMBL CD153866 [ CGTAAGGACCCAAAAATCATCTGGCAACCAAGTTAAATTGTTGCTGCTCAAATCAATAAGTTCCAGGGTTTTAGTCAGTGGTGAGCTTTCGGAAATTGATGGCCATCTTGTGATGTGGTTTTTACATAAACACAAATGAGCCATATTGAGGTTTTGTACTTCTTGAGGAATTTTTTCCAGTAAATTATCACTCAAGTCAAGGAAGCGCAGACTGTATAGTTTG AGAAGTCTTGTATCAAACTGACGCAACCTCAATCCTGCTGCAACTACTTCATGCAGAGATATACTGAAGCCTTGAGAAAAAGGATAGTCTTCTCGTTTTGTTATAACTAGCCGGCGATGACCTACTTTCCGAATTTCATTTGTAGCAGGCCTGTTGCTGAGGATTCCAATGGGTATTTTGTTACCTGATTTTATAAGGTTTAAAATTTTTACCAGCTTCATCAAATCCGAGAGTTCAGCCTGATGAATCATTATAAATTTAGGGGGGATTTTCAGACGGATCGTCAGGTTTCCTTCTTTAACATGCTTGGTGAATAGCCTTTCAATGTTTGCTGAGATTNTGAATTTCCGACACGTATTTGAGGAAGATTCAGTGATGAAAATAATGGCATCTCCATTTTCATCGCNAAGTGATAAGACACTTTGCTTAGNTTACATCTACTACGA] [-] EMBL CD077853 [ TCATCTGGCAACCAAGTTAAATTGTTGCTGCTCAAATCAATAAGTTCCAGGGTTTTAGTCAGTGGTGAGCTTTCGGAAATTGATGGCCATCTTGTGATGTGGTTTTTACATAAACACAAATGAGCCATATTGAGGTTTTGTACTTCTTGAGGAATTTTTTCCAGTAAATTATCACTCAAGTCAAGGAAGCGCAGGCTGTATAGTTTGCAGAAGTCTTGTATCAAACTGACGCACCCTCAATCCTGCTGCAACTACTTCcctaggacc ] consensusID : consensus_7311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [GGGGGTTTTGTCGATCACAAGAAATGTTCATCCAGCTTTTATACGGCACAAGAATACGGTAAGGATTCACGCCACATCTTAAACGGCAACATAAACAAGTTCTAAATACTGCCATACGGATACGCAAATTCCAGGGTAAGATATTTTCGAGGCAGGGGTACCAATTACTACGAAGGAAACTTGTTGACGCACAGCTGAGCTATGTCAAGGCAACACCACTTGGTTTAACAGCCAAATCAGAAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATATAGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTTGTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAGGTTCGTAAGGACCCAAAAA] [+] EMBL CD147501 [GGGGGTTTTGTCGATCACAAGAAATGTTCATCCAGCTTTTATACGGCACAAGAATACGGTAAGGATTCACGCCACATCTTAAACGGCAACATAAACAAGTTCTAAATACTGCCATACGGATACGCAAATTCCAGGGTAAGATATTTTCGAGGCAGGGGTACCAATTACTACGAAGGAAACTTGTTGACGCACAGCTGAGCTATGTCAAGGCAACACCACTTGGTTTAACAGCCAAATCAGAAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATATAGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTTGTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAGGTTCGTAAGGACCCAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7311#0 AGGGGTATAGTCCATCACTAAATATGTGCATCCCTGTTTGATACGGATCTAGAATACCGC 60 consensus_7311#1 GGGGGTTTTGTCGATCACAAGAAATGTTCATCCAGCTTTTATACGGCACAAGAATACGGT 60 ***** * *** ***** * * **** ***** *** ****** * ******* * consensus_7311#0 CCGGATCCATCGCCTCATTTTATACAGTATCCTATACA-GTTACAAATATTGCCAGTACG 119 consensus_7311#1 AAGGATTCA-CGCCACATCTTAAACGGCAACATAAACAAGTTCTAAATACTGCCA-TACG 118 **** ** **** *** *** ** * * * ** *** *** ***** ***** **** consensus_7311#0 TGATCGCAAACTCCACGGTAACCATTTTGCGAGGCAGGGGTACCAATTACTACGAAGGAA 179 consensus_7311#1 GATACGCAAATTCCAGGGTAAGATATTTTCGAGGCAGGGGTACCAATTACTACGAAGGAA 178 ****** **** ***** *** ******************************* consensus_7311#0 ACTTGTTGACGCACAGCTGAGCTATGTCAAGGCA-CACCACTTGGTTTAACAGCCAAATC 238 consensus_7311#1 ACTTGTTGACGCACAGCTGAGCTATGTCAAGGCAACACCACTTGGTTTAACAGCCAAATC 238 ********************************** ************************* consensus_7311#0 AGAAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATAT 298 consensus_7311#1 AGAAGGTAGAAACGGATTATTGTACACTACTAGCTGGTTTAGTTGACGAGAAGGTAATAT 298 ************************************************************ consensus_7311#0 AGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTT 358 consensus_7311#1 AGATGGTAAAGAGTCCAATTTATTATCATTCAAAATAAGCACAGAGAGACGATCTAATTT 358 ************************************************************ consensus_7311#0 GTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAG 418 consensus_7311#1 GTGCAGGAAAGCAACTGGGACACCTCTCAGTTTGTTATTTGAAAGGTTGACGTTCCTAAG 418 ************************************************************ consensus_7311#0 GTTCGTAAGGACCCAAAAATCATCTGGCAACCAAGTTAAATTGTTGCTGCTCAAATCAAT 478 consensus_7311#1 GTTCGTAAGGACCCAAAAA----------------------------------------- 437 ******************* consensus_7311#0 AAGTTCCAGGGTTTTAGTCAGTGGTGAGCTTTCGGAAATTGATGGCCATCTTGTGATGTG 538 consensus_7311#1 ------------------------------------------------------------ consensus_7311#0 GTTTTTACATAAACACAAATGAGCCATATTGAGGTTTTGTACTTCTTGAGGAATTTTTTC 598 consensus_7311#1 ------------------------------------------------------------ consensus_7311#0 CAGTAAATTATCACTCAAGTCAAGGAAGCGCAGACTGTATAGTTTGAGAAGTCTTGTATC 658 consensus_7311#1 ------------------------------------------------------------ consensus_7311#0 AAACTGACGCAACCTCAATCCTGCTGCAACTACTTCATGCAGAGATATACTGAAGCCTTG 718 consensus_7311#1 ------------------------------------------------------------ consensus_7311#0 AGAAAAAGGATAGTCTTCTCGTTTTGTTATAACTAGCCGGCGATGACCTACTTTCCGAAT 778 consensus_7311#1 ------------------------------------------------------------ consensus_7311#0 TTCATTTGTAGCAGGCCTGTTGCTGAGGATTCCAATGGGTATTTTGTTACCTGATTTTAT 838 consensus_7311#1 ------------------------------------------------------------ consensus_7311#0 AAGGTTTAAAATTTTTACCAGCTTCATCAAATCCGAGAGTTCAGCCTGATGAATCATTAT 898 consensus_7311#1 ------------------------------------------------------------ consensus_7311#0 AAATTTAGGGGGGATTTTCAGACGGATCGTCAGGTTTCCTTCTTTAACATGCTTGGTGAA 958 consensus_7311#1 ------------------------------------------------------------ consensus_7311#0 TAGCCTTTCAATGTTTGCTGAGATTNTGAATTTCCGACACGTATTTGAGGAAGATTCAGT 1018 consensus_7311#1 ------------------------------------------------------------ consensus_7311#0 GATGAAAATAATGGCATCTCCATTTTCATCGCNAAGTGATAAGACACTTTGCTTAGNTTA 1078 consensus_7311#1 ------------------------------------------------------------ consensus_7311#0 CATCTACTACGA 1090 consensus_7311#1 ------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||