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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7315#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 579 fasta sequence
[TAATGTTATATATTTATATATATCTCCGCTCATTTTATTGTTTTAATTAAAAAGAATTTGAACCAAAAGCAAAAACAAGACAAGATTAGCCGGCGCACAAACGAAGTGTGAAAAATTAAAGCAGAGAAGGAAAAAAAAGTTAACAAATCCGGTAAGTAAGCATAAATGTCAGGACAACGACACGATTATGTTCGAAGAATAACAATAAGGTATAGCATATGAGGGGAGAGAAGAGAGCATATGTGTATCGAGAAGGAACAATGACTGTGGTAAGGGTTAAATAACTGAAAAATGAGATTGGCATAATAAACTGAAAAGGTATAAACAACGATAAACAGTAATGGAATGAAATAAAAAGAAAGCATCAAGGAAGTTGTTTTTTCTAACTGAACGGTTTTTGAAATAAAAACAGAAGTTATGGATCTTGACAGTGTATATAATCGAATTCATTACCAATAATAATATATGGCAGCACTGATAAATATTTGTGTAAATAATGATTGAATTGGACAGATAAAAACTTTATTAATGATAAGAACAATAGTAAATAATAATAATAATAATAATAATAATGCCTTA]
[+] EMBL CD073161 [TAATGTTATATATTTATATATATCTCCGCTCATTTTATTGTTTTAATTAAAAAGAATTTGAACCAAAAGCAAAAACAAGACAAGATTAGCCGGCGCACAAACGAAGTGTGAAAAATTAAAGCAGAGAAGGAAAAAAAAGTTAACAAATCCGGTAAGTAAGCATAAATGTCAGGACAACGACACGATTATGTTCGAAGAATAACAATAAGGTATAGCATATGAGGGGAGAGAAGAGAGCATATGTGTATCGAGAAGGAACAATGACTGTGGTAAGGGTTAAATAACTGAAAAATGAGATTGGCATAATAAACTGAAAAGGTATAAACAACGATAAACAGTAATGGAATGAAATAAAAAGAAAGCATCAAGGAAGTTGTTTTTTCTAACTGAACGGTTTTTGAAATAAAAACAGAAGTTATGGATCTTGACAGTGTATATAATCGAATTCATTACCAATAATAATATATGGCAGCACTGATAAATATTTGTGTAAATAATGATTGAATTGGACAGATAAAAACTTTATTAATGATAAGAACAATAGTAAATAATAATAATAATAATAATAATAATGCCTTA]
[+] EMBL CD076507 [TAATGTTATATATTTATATATATCTCCGCTCATTTTATTGTTTTAATTAAAAAGAATTTGAACCAAAAGCAAAAACAAGACAAGATTAGCCGGCGCACAAACGAAGTGTGAAAAATTAAAGCAGAGAAGGAAAAAAAAGTTAACAAATCCGGTAAGTAAGCATAAATGTCAGGACAACGACACGATTATGTTCGAAGAATAACAATAAGGTATAGCATATGAGGGGAGAGAAGAGAGCATATGTGTATCGAGAAGGAACAATGACTGGGGTAAGGGTTAAATAACTGAAAAATGAGATTGGCATAATAAACTGAAAAGGTATAAACAACGATAAACAGTAATGGAATGAAATAAAAAGAAAGCATCAAGGAAGTTGTTTTTTCTAACTGAACGGTTTTTGAAATAAAAACAGAAGTTATGGATCTTGACAGTGTATATAATCGAATTCATTACCAATAATAATATATGGCAG ]
[+] EMBL AW587561 [TAATGTTATATATTTATATATATCTCCGCTCATTTTATTGTTTTAATTAAAAAGAATTTGAACCAAAAGCAAAAACAAGACAAGATTAGCCGGCGCACAAACGAAG GTGAAAAATTAAA ]
[-] EMBL CD082923 [ AATGTTATATATTTATATATATCTCCGCTCATTTTATTGTTTTAATTAAAAAGAATTTGAACCAAAAGCAAAAACAAGACAAGATTAGCCGGCGCACAAACGAAGTGTGAAAAATTAAAGCAGAGAAGGAAAAAAAAGTTAACAAATCCGGTAAGTAAGCATAAATGTCAGGACAACGACACGATTATGTTCGAAGAATAACAATAAGGTATAGCATATGAGGGGAGAGAAGAGAGCATATGTGTATCGAGAAGGAACAATGACTGTGGTAAGGGTTAAATAACTGAAGAATGAGATTGGCATAATAAACTGAAAAGGTATAAACAACGATAAACAGTAATGGAATGAAATAAAAAGAAAGCATCAAGGAAGTTGTTTTTTCTAACTGAACGGTTTTTGAAATAAAAACAGAAGTTATGGATCTTGACAGTGTATATAATCGAATTCATTACCAATAATAATATATGGCAGCCCTcg ]
consensusID : consensus_7315#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence
[AGATATTATATATATCTACGCTCATCTATTGTTTTATTATTAAGAAGATGTTGCACCAAGCAGCAACAACGACGACGATATTCGCGCGCACAAACAGTGTGTGAAAATTAACGCAGAGAGGGAAAAAAATTTAACAAACCCTGAATGTAAGCATAAATGTCAGGACAACGACACGATTATTTTCGAGGATAACAATAAGGTATAGCATATGAGGGGAGAGAAGAGAGCATATGTGTATCGAGAAGGAACAATGACTGTGGTAAGGTTAAATAACTGAAAAATGAGATTCGCATAATAAACTGAAAAGGTATAAACAACGATAAACAGTAATGGAATGAAATAAAAAGAAAGCATCAAGGAAGTTGTTTTTTCTAACTGAACGGTTTTTGAAATAAAAACAGAAGTTATGGATCTTGACAGTGTATA]
[-] EMBL AI764926 [AGATATTATATATATCTACGCTCATCTATTGTTTTATTATTAAGAAGATGTTGCACCAAGCAGCAACAACGACGACGATATTCGCGCGCACAAACAGTGTGTGAAAATTAACGCAGAGAGGGAAAAAAATTTAACAAACCCTGAATGTAAGCATAAATGTCAGGACAACGACACGATTATTTTCGAGGATAACAATAAGGTATAGCATATGAGGGGAGAGAAGAGAGCATATGTGTATCGAGAAGGAACAATGACTGTGGTAAGGTTAAATAACTGAAAAATGAGATTCGCATAATAAACTGAAAAGGTATAAACAACGATAAACAGTAATGGAATGAAATAAAAAGAAAGCATCAAGGAAGTTGTTTTTTCTAACTGAACGGTTTTTGAAATAAAAACAGAAGTTATGGATCTTGACAGTGTATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7315#0 TAATGTTATATATTTATATATATCTCCGCTCATTTTATTGTTTTA--ATTAAAAAGAATT 58
consensus_7315#1 -------AGATATT-ATATATATCTACGCTCATCT-ATTGTTTTATTATTAAGAAGATGT 51
* ***** ********** ******* * ********* ***** **** *
consensus_7315#0 TGAACCAAA-AGCAAAAACAA-GACAAGATTAGCCGGCGCACAAACGAAGTGTGAAAAAT 116
consensus_7315#1 TGCACCAAGCAGCAACAACGACGACGATATTCGC--GCGCACAAACAGTGTGTGAAAA-T 108
** ***** ***** *** * *** * *** ** ********** ********* *
consensus_7315#0 TAAAGCAGAGAAGGAAAAAAAAGTTAACAAATCCGGTAAGTAAGCATAAATGTCAGGACA 176
consensus_7315#1 TAACGCAGAGAGGGAAAAAAAT-TTAACAAACCCTGAATGTAAGCATAAATGTCAGGACA 167
*** ******* ********* ******** ** * * *********************
consensus_7315#0 ACGACACGATTATGTTCGAAGAATAACAATAAGGTATAGCATATGAGGGGAGAGAAGAGA 236
consensus_7315#1 ACGACACGATTATTTTCGAGGA-TAACAATAAGGTATAGCATATGAGGGGAGAGAAGAGA 226
************* ***** ** *************************************
consensus_7315#0 GCATATGTGTATCGAGAAGGAACAATGACTGTGGTAAGGGTTAAATAACTGAAAAATGAG 296
consensus_7315#1 GCATATGTGTATCGAGAAGGAACAATGACTGTGGTAAGG-TTAAATAACTGAAAAATGAG 285
*************************************** ********************
consensus_7315#0 ATTGGCATAATAAACTGAAAAGGTATAAACAACGATAAACAGTAATGGAATGAAATAAAA 356
consensus_7315#1 ATTCGCATAATAAACTGAAAAGGTATAAACAACGATAAACAGTAATGGAATGAAATAAAA 345
*** ********************************************************
consensus_7315#0 AGAAAGCATCAAGGAAGTTGTTTTTTCTAACTGAACGGTTTTTGAAATAAAAACAGAAGT 416
consensus_7315#1 AGAAAGCATCAAGGAAGTTGTTTTTTCTAACTGAACGGTTTTTGAAATAAAAACAGAAGT 405
************************************************************
consensus_7315#0 TATGGATCTTGACAGTGTATATAATCGAATTCATTACCAATAATAATATATGGCAGCACT 476
consensus_7315#1 TATGGATCTTGACAGTGTATA--------------------------------------- 426
*********************
consensus_7315#0 GATAAATATTTGTGTAAATAATGATTGAATTGGACAGATAAAAACTTTATTAATGATAAG 536
consensus_7315#1 ------------------------------------------------------------
consensus_7315#0 AACAATAGTAAATAATAATAATAATAATAATAATAATGCCTTA 579
consensus_7315#1 -------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||