These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7316#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 746 fasta sequence [GTTGTGGTCATGTCAACCGTAAATTTTGTTCTGTATATACGTACACTTATAACTACTAATGTCGCGTCAGTTAACTTTTGTAACTGGTAATCCAAACAAATTAACTGAATTCCTTAAAATTATTGGTGAGGAATTTGCCGGAAAAGTAAAAACAGTTGATTTAGATTTACCTGAAGTTCAAGGTAGTATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGGACCTGTATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCACTGGTATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACGTGATTTTGGATGGGATTGTATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAATGGATAAATCTATCAAAAATTCCATATCACATCGATCTANAGCATTAGAAAAAGTGAAATCTTTTTTGTTGAATCATGAATTTCAATGAAAGCAGTAATTCTTTCTCTGTTTTGAACAAAAACGTTTATAGAAGGAATATCGATATTTTGGATTAATTATTNTATACATTTAGATTGAACTACTTTTTTATTTTAAAG-TATATAGAA] [+] EMBL CD079459 [GTTGTGGTCATGTCAACCGTAAATTTTGTTCTGTATATACGTACACTTATAACTACTAATGTCGCGTCAGTTAACTTTTGTAACTGGTAATCCAAACAAATTAACTGAATTCCTTAAAATTATTGGTGAGGAATTTGCCGGAAAAGTAAAAACAGTTGATTTAGATTTACCTGAAGTTCAAGGTAGTATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGGACCTGTATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCACTGGTATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACGTGATTTTGGATGGGATTGTATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAATGGATAAATCTATCAAAAATTCCATATCACATCGATCTANAGCATTAGAAAAAGTGAAATCTTTTTTGTTGAATCATGAATTTCAATGAAAGCAGTAATTCTTTCTCTGTTTTGAACAAAAACGTTTATAGAAGGAATATCGATATTTTGGATTAATTATTNTATACATTTAGATTGAACTACTTTTTTATTTTAAAG TATATAGA ] [-] EMBL CD073730 [ CAAACAAATTAACTGAATTCCTTAAAATTATTGGTGAGGAATTTGCCGGAAAAGTAAAAACAGTTGATTTAGATTTACCTGAAGTTCAAGGTAGTATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGGACCTGTATTAATCGAAGATACAGCCCTTTGTTTTAAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCACTGGTATCACCCCAGGTTGTATTGTTTCCCCTCGTGGACCACGTGATTTTGGATGGGATTGTATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAATGGATAAATTTATCAAAAATTCCATATCCCATCGATTTAAAGCATTAGAAAAAGTGAAATCTTTTTTGTTGAATCATGAATTTCAATGAAAGCAGTAATTCTTTTTCTGTTTTGAACAAAAACGTTTATAGAAGGAATATCGATATTTTGGATTAATTATTTTATACATTTAGATTGAAGGACTTTTTTA TTTAAAGAAATATAGAA] [+] EMBL CD158280 [ GTATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCACTGGTATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACGTGATTTTGGATGGGATTGTATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAATGGATAAATCTATCAAAAATT ] consensusID : consensus_7316#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [AATGGACTTCGCGCTGAACAACAAGACTTGATATCTTAAATCTGATTGACTAATGTCGCGTCAGTTAACTTTTGTAACTGGTAATCCAAACAAATTAACTGAATTCCTTAAAATTATTGGTGAGGAATTTGCCGGAAAAGTAAGAACAGTTGATTTAGATTTACCTGAAGTTCAAGGTAGTATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGGACCTGTATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCAC] [+] EMBL CD183271 [AATGGACTTCGCGCTGAACAACAAGACTTGATATCTTAAATCTGATTGACTAATGTCGCGTCAGTTAACTTTTGTAACTGGTAATCCAAACAAATTAACTGAATTCCTTAAAATTATTGGTGAGGAATTTGCCGGAAAAGTAAGAACAGTTGATTTAGATTTACCTGAAGTTCAAGGTAGTATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGGACCTGTATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCAC] consensusID : consensus_7316#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [TATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACGTGATTTTGGATGGGATTGTATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAATGGATAAATCTATCAAAATTCCATATCACATCGATCTAAAGCACTAGAGAAAGTGAAAATCTCTTTTTGGTGAATCATGAATTTCTAATGAGAAGCAGTGAAATCTCTCTCTGTGTTGAACAAAAACGTGTATAGAAGGAGTATCGCTATATTGGAGTAATTATATATACACTTAGATTGTACTACTACTTTATTTGAAGTATATAGAGTATTA] [+] EMBL AW497745 [TATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACGTGATTTTGGATGGGATTGTATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAATGGATAAATCTATCAAAATTCCATATCACATCGATCTAAAGCACTAGAGAAAGTGAAAATCTCTTTTTGGTGAATCATGAATTTCTAATGAGAAGCAGTGAAATCTCTCTCTGTGTTGAACAAAAACGTGTATAGAAGGAGTATCGCTATATTGGAGTAATTATATATACACTTAGATTGTACTACTACTTTATTTGAAGTATATAGAGTATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7316#0 GTTGTGGTCATGTCAACCGTAAATTTTGTTCTGTATATACGTACACTTATAACTACTAAT 60 consensus_7316#2 ------------------------------------------------------------ consensus_7316#1 ------------------------------------------------------------ consensus_7316#0 GTCGCGTCAGTTAACTTTTGTAACTGGTAATCCAAACAAATTAACTGAATTCCTTAAAAT 120 consensus_7316#2 ------------------------------------------------------------ consensus_7316#1 ------------------------------------------------------------ consensus_7316#0 TATTGGTGAGGAATTTGCCGGAAAAGTAAAAACAGTTGATTTAGATTTACCTGAAGTTCA 180 consensus_7316#2 ------------------------------------------------------------ consensus_7316#1 ------------------------------------------------------------ consensus_7316#0 AGGTAGTATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGG 240 consensus_7316#2 ------------------------------------------------------------ consensus_7316#1 ------------------------------------------------------------ consensus_7316#0 ACCTGTATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACC 300 consensus_7316#2 ------------------------------------------------------------ consensus_7316#1 ------------------------------------------------------------ consensus_7316#0 GTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGA 360 consensus_7316#2 ------------------------------------------------------------ consensus_7316#1 ------------------------------------------------------------ consensus_7316#0 CTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAA 420 consensus_7316#2 ------------------------------------------------------------ consensus_7316#1 ----------------------------AATGGACTTCGCGCTGAACAACAAGACTTGAT 32 consensus_7316#0 ACCAGTACAATTATTCACTGGTATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACG 480 consensus_7316#2 ---------------------TATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACG 39 consensus_7316#1 ATCTTAAATCTGATTGACTAATGTCGCGTCAGTTA--ACTTTTGTAACTGGTAATCCAAA 90 * ** * *** * * * ** * ** ** *** consensus_7316#0 TGATTTTGGATGGGATTGT--ATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAA 538 consensus_7316#2 TGATTTTGGATGGGATTGT--ATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAA 97 consensus_7316#1 CAAATT-AACTGAATTCCTTAAAATTATTGGTGAGGAATTTGCCGGAAAAGTAAGAACAG 149 * ** ** * * * *** * ** ** *** ** * * consensus_7316#0 ATGGAT-AAATCTATCAAAAATTCCATATCACATCGAT--CTANAGCATTAGAAAAAGTG 595 consensus_7316#2 ATGGAT-AAATCTATCAAAA-TTCCATATCACATCGAT--CTAAAGCACTAGAGAAAGTG 153 consensus_7316#1 TTGATTTAGATTTACCTGAAGTTCAAGGTAGTATCGAAGATGTTAGTATACAAAAATGTT 209 ** * * ** ** * ** *** * * ***** ** * * ** ** consensus_7316#0 AAA--TCTTTTTTGTTGAATCATGAATTTC-AATGA-AAGCAGT-AATTCTTTCTCTGTT 650 consensus_7316#2 AAAATCTCTTTTTGGTGAATCATGAATTTCTAATGAGAAGCAGTGAAATCTCTCTCTGTG 213 consensus_7316#1 TATCTGCTTTTAAAATAATCAATGGACCTGTATT---AATCGAAGATACAGCACTTTGTT 266 * *** * * *** * * * * ** * * ** *** consensus_7316#0 TTGAACAAAAACGTTTATAGAAGGAATATCGATATTTTGGATTAATTATTNTATACATTT 710 consensus_7316#2 TTGAACAAAAACGTGTATAGAAGGAGTATCGCTATATTGGAGTAATTAT-ATATACACTT 272 consensus_7316#1 TT----AAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTC 322 ** *** * ** *** * * * * * * ** * * * * consensus_7316#0 AGAT-TGAACTACTTTTT--TATTTTAAAGTATATAGAA--------------------- 746 consensus_7316#2 AGAT-TGTACTACTACTT--TATTT-GAAGTATATAGAGTATTA---------------- 312 consensus_7316#1 GGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTA 382 * ** *** * *** * * * * * consensus_7316#0 -------------------------------------------------- consensus_7316#2 -------------------------------------------------- consensus_7316#1 TGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCAC 432 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||