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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1187 fasta sequence
[CCCGAAAGTCGATGTTTAAAGAAGTTGAGGAGCGCTGTGATGCTTATTTACAAACTTGGTGGGAACAAGAAGCTGCTGGAGTGTTAAGTGGTCTATCGGGTTCAAATGGGCCTCTGGATACAGAACTCACCTCCGTACCTGATTTAAAAAGTTATAGTCACTCCGAATCGGGGAGCGGAATGCAAACTATGCAGTTAACTCGGGATGAACTGCTTTACGCAAACCAATTGGATTACTACCTTACAATGCGTCTCACATCTACCGATTTCACACCTATTCAAAATAGAGTTCCTCGTGACTTACTAACCTATATGTCACGAGCTCAAGATTCCGTTTCCCACGAAAAGCAGTTAAAAACGCAGCTGAAAAATTCTCATTCCGATATCACGGAGATGTGGACCTTCATGAGGACAATTTCTTATCATATGCGTAATGAGCATGGTAGTATGTTATTATATAACCATCCACTGGAAGTTCGGGCGTCTATATCTGTACAAAATACTTTATCACTGTGTTCTTTACAACATTTGGAGTCTGAGTTTCTAGAGTTTTTAAAAATAACGGTTGCCAACCAGCCTCGATTAGCTCGGCTTGGTGGGCGTCCAGGGACCCGATCATTAGTGCGTGCATATCTAAGTCTTCGTCTACCCTCTGACAACGTAGCAGATGTTTCATCTCTGAGCAACCTCTATCAATTATCTGAACAAAACGGTTGGGAATTTGATGATGGTCTTGTAGATGGTGTTCCTGTGTGGCCAATGATTTTTTACTGCCTTCGCACGGGAGATACTCAGGTTACTTTGGAAGTTGCACGTGATGCCTTAAACAACTTAGGAAACTTTGTAACAGTGCTAGAGGATTATGTAAATCATAGTCGTCGTCTCAGAACTCCCAACCAAGCAAGATTTCGTCAGACATGCAAACAAGTGATCAAGTCTACTCGTGATCCATATAAACGACTAACATATTCCATTCTTGGCCAATGTGACCTTACTGAAAATCATTCGGACATTATTTCAAATATAGATGACTTTTTATGGATAAAGATATCTCAAGTTATTGCTCAAGAGCCCTCAGAGTCGGTGGTTACATCAAAAATTAGTATGGATGATACTTTTACTTTAGGTCAATTGCAAACTCTACTGTACGAAACCTATGGTGAGGTGCATTNTGACGCATGGTCTCAA]
[+] EMBL CD062277 [CCCGAAAGTCGATGTTTAAAGAAGTTGAGGAGCGCTGTGATGCTTATTTACAAACTTGGTGGGAACAAGAAGCTGCTGGAGTGTTAAGTGGTCTATCGGGTTCAAATGGGCCTCTGGATACAGAACTCACCTCCGTACCTGATTTAAAAAGTTATAGTCACTCCGAATCGGGGAGCGGAATGCAAACTATGCAGTTAACTCGGGATGAACTGCTTTACGCAAACCAATTGGATTACTACCTTACAATGCGTCTCACATCTACCGATTTCACACCTATTCAAAATAGAGTTCCTCGTGACTTACTAACCTATATGTCACGAGCTCAAGATTCCGTTTCCCACGAAAAGCAGTTAAAAACGCAGCTGAAAAATTCTCATTCCGATATCACGGAGATG ]
[+] EMBL CD061310 [ GGAATGCAAACTATGCAGTTAACTCGGGATGAACTGCTTTACGCAAACCAATTGGATTACTATCTTACAATGCGTCTCACATCTACCGATTTCACACCTATTCAAAATAGAGTTCCTCGTGACTTACTAACCTATATGTCACGAGCTCAAGATTCCGTTTCCCACGAAAAGCAGTTAAAAACGCAGCTGAAAAATTCTCATTCCGATATCATGGAGATGTGGACCTTCATGAGGACAATTTCTTATCATATGCGTAATGAGCATGGTAGTATGTTATTATATAACCATCCACTGGAAGTTCGGG ]
[-] EMBL CD185034 [ TATCATATGCGTAATGAGCATGGTAGTATGTTATTATATAACCATCCACTGGAAGTTCGGGCGTCTATATCTGTACAAAATACTTTATCACTGTGTTCTTTACAACATTTGGAGTCTGAGTTTCTAGAGTTTTTAAAAATAACGGTTGCCAACCAGCCTCGATTAGCTCGGCTTGGTGGGCGTCCAGGGACCCGATCATTAGTGCGTGCATATCTAAGTCTTCGTCTACCCTCTGACAACGTAGCAGATGTTTCATCTCTGAGCAACCTCTATCAATTATCTGAACAAAACGGTTGGGAATTTGATGATGGTCTTGTAGATGGTGTTCCTGTGTGGCCAATGATTTTTTACTGCCTTCGCA ]
[+] EMBL CD129119 [ AGTCTGAGTTTCTAGAGTTTTTAAAAATAACGGTTGCCAACCAGCCTCGATTAGCTCGACTTGGTGGGCGTCCAGGGACCCGATCATTAGTGCGTGCATATCTAAGTCTTCGTCTACCCTCTGACAACGTAGCAGATGTTACATCTCTGAGCAACCTCTATCAATTATCTGAACAAAACGGTTGGGAATTTGATGATGGTCTTGTAGATGGTGTTCCTGTGTGGCCAATGATTTTTTACTGCCTTCGCACGGGAGATACTCAGGTTACTTTGGAAGTTGCACGTGATGCCTTAAACAACTTAGGAAACTTTGTAACAGTGCTAGAGGATTATGTAAATCATAGTCGTCGTCTCAGAACTCCCAACCAAGCAAGATTTCGTCAGACATGCAAACAAGTGATCAAGTCTACTCGTGATCCATATAAACGACTAACATATTCCATTCTTGGCCAATGTGACCTTACTGAAAATCATTCGGACATTATTTCAAATATAGATGACTTTTTATGGATAAAGATATCTCAAGTTATTGCTCAAGAGCCCTCAGAGTCGGTGGTTACATCAAAAATTAGTATGGATGATACTTTTACTTTAGGTCAATTGCAAACTCTACTGTACGAAACCTATGGTGAGGTGCATTNTGACGCATGGTCTCAA]
consensusID : consensus_7325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence
[GCAATAACTTGAGATATCTTTATCCATAAAAAGTCATCTATATTTGAAATAATGTCCGAATGATTTTCAGTAAGGTCACATTGGCCAAGAATGGAATATGTTAGTCGTTTATATGGATCACGAGTAGACTTGATCACTTGTTTGCATGTCTGACGAAATCTGACTTGGTGGGCGTCCAGGGACCCGATCATTAGTGCGTGCATAACTAAGTCTTCGTCTACCCTCTGACAACGTAGCAGATGTTTCATCTCTGAGCAACCTCTATCAATTATCTGAACAAAACGGTTGGGAATTTGATGATGGTCTTGTAGATGGTGTTCCTGTGTGGCCAATGATTTTTTACTGCCTTCGCACGG]
[+] EMBL CD131075 [GCAATAACTTGAGATATCTTTATCCATAAAAAGTCATCTATATTTGAAATAATGTCCGAATGATTTTCAGTAAGGTCACATTGGCCAAGAATGGAATATGTTAGTCGTTTATATGGATCACGAGTAGACTTGATCACTTGTTTGCATGTCTGACGAAATCTGACTTGGTGGGCGTCCAGGGACCCGATCATTAGTGCGTGCATAACTAAGTCTTCGTCTACCCTCTGACAACGTAGCAGATGTTTCATCTCTGAGCAACCTCTATCAATTATCTGAACAAAACGGTTGGGAATTTGATGATGGTCTTGTAGATGGTGTTCCTGTGTGGCCAATGATTTTTTACTGCCTTCGCACGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7325#0 CCCGAAAGTCGATGTTTAAAGAAGTTGAGGAGCGCTGTGATGCTTATTTACAAACTTGGT 60
consensus_7325#1 ------------------------------------------------------------
consensus_7325#0 GGGAACAAGAAGCTGCTGGAGTGTTAAGTGGTCTATCGGGTTCAAATGGGCCTCTGGATA 120
consensus_7325#1 ------------------------------------------------------------
consensus_7325#0 CAGAACTCACCTCCGTACCTGATTTAAAAAGTTATAGTCACTCCGAATCGGGGAGCGGAA 180
consensus_7325#1 ------------------------------------------------------------
consensus_7325#0 TGCAAACTATGCAGTTAACTCGGGATGAACTGCTTTACGCAAACCAATTGGATTACTACC 240
consensus_7325#1 ------------------------------------------------------------
consensus_7325#0 TTACAATGCGTCTCACATCTACCGATTTCACACCTATTCAAAATAGAGTTCCTCGTGACT 300
consensus_7325#1 ------------------------------------------------------------
consensus_7325#0 TACTAACCTATATGTCACGAGCTCAAGATTCCGTTTCCCACGAAAAGCAGTTAAAAACGC 360
consensus_7325#1 ------------------------------------------------------------
consensus_7325#0 AGCTGAAAAATTCTCATTCCGATATCACGGAGATGTGGACCTTCATGAGGACAATTTCTT 420
consensus_7325#1 --------------------------------------------------GCAATAACTT 10
**** ***
consensus_7325#0 ATCATATGCGTAATGA-GCATGGTAGTATGTTATTATATAACCATCCACTGGAAGTTCGG 479
consensus_7325#1 GAGATATCTTTATCCATAAAAAGTCATCTATATTTGAAATAATGTCCGAATGATTTTCAG 70
**** ** * * ** * * * ** * * *** ** *** *
consensus_7325#0 -GCGTCTATATCTGTACAAAATACTTTATCACTGTGTTCTTTACAACATTTGGAGTCTGA 538
consensus_7325#1 TAAGGTCACATTGGCCAAGAATGGAATATG--TTAGTCGTTTATA-----TGGATCACGA 123
* * ** * * *** *** * ** **** * **** **
consensus_7325#0 GTTTCTAGAGTTTTTAAAAATAACGGTTGCCAACCAGCCTCGATTAGCTCGGCTTGGTGG 598
consensus_7325#1 GT----AGACTT------GATCAC--TTGTTTGCATGTCTGACGAAATCTGACTTGGTGG 171
** *** ** ** ** *** * * ** * * ********
consensus_7325#0 GCGTCCAGGGACCCGATCATTAGTGCGTGCATATCTAAGTCTTCGTCTACCCTCTGACAA 658
consensus_7325#1 GCGTCCAGGGACCCGATCATTAGTGCGTGCATAACTAAGTCTTCGTCTACCCTCTGACAA 231
********************************* **************************
consensus_7325#0 CGTAGCAGATGTTTCATCTCTGAGCAACCTCTATCAATTATCTGAACAAAACGGTTGGGA 718
consensus_7325#1 CGTAGCAGATGTTTCATCTCTGAGCAACCTCTATCAATTATCTGAACAAAACGGTTGGGA 291
************************************************************
consensus_7325#0 ATTTGATGATGGTCTTGTAGATGGTGTTCCTGTGTGGCCAATGATTTTTTACTGCCTTCG 778
consensus_7325#1 ATTTGATGATGGTCTTGTAGATGGTGTTCCTGTGTGGCCAATGATTTTTTACTGCCTTCG 351
************************************************************
consensus_7325#0 CACGGGAGATACTCAGGTTACTTTGGAAGTTGCACGTGATGCCTTAAACAACTTAGGAAA 838
consensus_7325#1 CACGG------------------------------------------------------- 356
*****
consensus_7325#0 CTTTGTAACAGTGCTAGAGGATTATGTAAATCATAGTCGTCGTCTCAGAACTCCCAACCA 898
consensus_7325#1 ------------------------------------------------------------
consensus_7325#0 AGCAAGATTTCGTCAGACATGCAAACAAGTGATCAAGTCTACTCGTGATCCATATAAACG 958
consensus_7325#1 ------------------------------------------------------------
consensus_7325#0 ACTAACATATTCCATTCTTGGCCAATGTGACCTTACTGAAAATCATTCGGACATTATTTC 1018
consensus_7325#1 ------------------------------------------------------------
consensus_7325#0 AAATATAGATGACTTTTTATGGATAAAGATATCTCAAGTTATTGCTCAAGAGCCCTCAGA 1078
consensus_7325#1 ------------------------------------------------------------
consensus_7325#0 GTCGGTGGTTACATCAAAAATTAGTATGGATGATACTTTTACTTTAGGTCAATTGCAAAC 1138
consensus_7325#1 ------------------------------------------------------------
consensus_7325#0 TCTACTGTACGAAACCTATGGTGAGGTGCATTNTGACGCATGGTCTCAA 1187
consensus_7325#1 -------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||