These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 940 fasta sequence [CCACGAGGCCAANAATTCGGCACGAGGGTTATGTTAAAGCCGGAGATTGGGATTGGGCATCCTGGAATAATTACCTGAGTTGGATCGCCCGCACCAATCCTCAGTGGTATGAAATATTTGTGAATTTAAGCCGAGGACTCGGCATAGATTGGGATGACATGTATAAAAAGTGGGTCAGCTCGGTGTCAGGGGATTCCAGCTGCAATAAAAACCCACCTATGTCTTATTGTGAGTTAAAATTGTTGTACTTATGGTTTCTATCTTTAAGGGAGTGACTATCATCTAGATGTAGTTTGAGTACTCGAATTGTTATATTGACCTCGAAGGTACATTTTATGTGGGCAACCTGAGGATGCAGTTCAAATAATATGGAAATTCGCCAACATACTTTTCTTTGTGCTGCTTGACGATTACCACAGGATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTATGTATGCTTCTCCCTTATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGTAGTCAATATTTTCTGCTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAAAATGCCTGAGTTCCAGGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTANTAAATGTTTACCTTATTAGTTTGTTCAATAAGTCAGTGTTGTCTTGAATTGGTTCTGTTTATTTACTAAAGACTGATGTNCCCCTACCAAAATAAGTCATTCAATCGACACAGTTATAGCGATTCCTTGCACATGTAAATCCATCTAGATATTACGATCTATGCTGACCTATATAGACTAAGTATCTACTAAACATCTGTATCTAGGTTCCTACTGACGTTCTACAGTATCTATAAGACAACTGCTTTATACTTAAGGTCCTTACAAACTTTTGCCTTTTGAAGGCTTTTAATAA] [+] EMBL CD081437 [CCACGAGGCCAANAATTCGGCACGAGGGTTATGTTAAAGCCGGAGATTGGGATTGGGCATCCTGGAATAATTACCTGAGTTGGATCGCCCGCACCAATCCTCAGTGGTATGAAATATTTGTGAATTTAAGCCGAGGACTCGGCATAGATTGGGATGACATGTATAAAAAGTGGGTCAGCTCGGTGTCAGGGGATTCCAGCTGCAATAAAAACCCACCTATGTCTTATTGTGAGTTAAAATTGTTGTACTTATGGTTTCTATCTTTAAGGGAGTGACTATCATCTAGATGTAGTTTGAGTACTCGAATTGTTATATTGACCTCGAAGGTACATTTTATGTGGGCAACCTGAGGATGCAGTTCAAATAATATGGAAATTCGCCAACATACTTTTCTTTGTGCTGCTTGACGATTACCACAGGATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTATGTATGCTTCTCCCTTATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGTAGTCAATATTTTCTGCTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAAAATGCCTGAGTTCCAGGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTANTAAATGTTTACCTTATTAGTTTGTTCAATAAGTCAGTGTTGTCTTGAATTGGTTCTGTTTATTTACTAAAGACTGATGTNCCCCTACCAAAATAAGTCATTCAATCGACACAGTTATAGCGATTCCTTGCACATGTAAATCCATCTAGATATTACGATCTATGCTGACCTATATAGACTAAGTATCTACTAAACATCTGTATCTAGGTTCCTACTGACGTTCTACAGTATCTATAAGACAACTGCTTTATACTTAAGGTCCTTACAAACTTTTGCCTTTTGAAGGCTTTTAATAA] consensusID : consensus_733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [GACGATTACCACAGGATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTATGTATGCTTCTCCCTTATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGTAGTCAATATTTTCTGCTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAAAATGCCTGAGTTCCAGGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTATAAAATGTTTACCTTATTAGTTTGTTCAATAAAGTCAGTGTTGTCTTGAATTGGTTCTGTTTATTTACTAAAGACTGATGTTCCCCTACCAAAATAAGTTCATTCAAATCGAACACAGTTTATAGCGATTTCCTTGCACCATGTAAAATCCATCTAGATATTACCGATCTAATGCTGACCCTATAATAGACTAAGTTATTCTACTAAACATCTGTTATCTCAGGTTTCCTACTGACAGTTTCTACAAGTATCTTATAAGACCAACTTGCTTCTCATACTTAAGTGTTCTTTACGTAAACATTTTGCCTATTTGTAATGCCATTTTAAATAAAATAA] [-] EMBL CD075263 [GACGATTACCACAGGATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTATGTATGCTTCTCCCTTATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGTAGTCAATATTTTCTGCTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAAAATGCCTGAGTTCCAGGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTATAAAATGTTTACCTTATTAGTTTGTTCAATAAAGTCAGTGTTGTCTTGAATTGGTTCTGTTTATTTACTAAAGACTGATGTTCCCCTACCAAAATAAGTTCATTCAAATCGAACACAGTTTATAGCGATTTCCTTGCACCATGTAAAATCCATCTAGATATTACCGATCTAATGCTGACCCTATAATAGACTAAGTTATTCTACTAAACATCTGTTATCTCAGGTTTCCTACTGACAGTTTCTACAAGTATCTTATAAGACCAACTTGCTTCTCATACTTAAGTGTTCTTTACGTAAACATTTTGCCTATTTGTAATGCCATTTTAAATAAAATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_733#0 CCACGAGGCCAANAATTCGGCACGAGGGTTATGTTAAAGCCGGAGATTGGGATTGGGCAT 60 consensus_733#1 ------------------------------------------------------------ consensus_733#0 CCTGGAATAATTACCTGAGTTGGATCGCCCGCACCAATCCTCAGTGGTATGAAATATTTG 120 consensus_733#1 ------------------------------------------------------------ consensus_733#0 TGAATTTAAGCCGAGGACTCGGCATAGATTGGGATGACATGTATAAAAAGTGGGTCAGCT 180 consensus_733#1 ------------------------------------------------------------ consensus_733#0 CGGTGTCAGGGGATTCCAGCTGCAATAAAAACCCACCTATGTCTTATTGTGAGTTAAAAT 240 consensus_733#1 ------------------------------------------------------------ consensus_733#0 TGTTGTACTTATGGTTTCTATCTTTAAGGGAGTGACTATCATCTAGATGTAGTTTGAGTA 300 consensus_733#1 ------------------------------------------------------------ consensus_733#0 CTCGAATTGTTATATTGACCTCGAAGGTACATTTTATGTGGGCAACCTGAGGATGCAGTT 360 consensus_733#1 ------------------------------------------------------------ consensus_733#0 CAAATAATATGGAAATTCGCCAACATACTTTTCTTTGTGCTGCTTGACGATTACCACAGG 420 consensus_733#1 ---------------------------------------------GACGATTACCACAGG 15 *************** consensus_733#0 ATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTATGTATGCTTCTCCCTT 480 consensus_733#1 ATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTATGTATGCTTCTCCCTT 75 ************************************************************ consensus_733#0 ATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGTAGTCAATATTTTCTG 540 consensus_733#1 ATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGTAGTCAATATTTTCTG 135 ************************************************************ consensus_733#0 CTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAAAATGCCTGAGTTCCA 600 consensus_733#1 CTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAAAATGCCTGAGTTCCA 195 ************************************************************ consensus_733#0 GGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTANTAAATGTTTACCTTA 660 consensus_733#1 GGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTATAAAATGTTTACCTTA 255 ******************************************** ************** consensus_733#0 TTAGTTTGTTCAATAA-GTCAGTGTTGTCTTGAATTGGTTCTGTTTATTTACTAAAGACT 719 consensus_733#1 TTAGTTTGTTCAATAAAGTCAGTGTTGTCTTGAATTGGTTCTGTTTATTTACTAAAGACT 315 **************** ******************************************* consensus_733#0 GATGTNCCCCTACCAAAATAAGT-CATTCAA-TCGA-CACAGTT-ATAGCGATT-CCTTG 774 consensus_733#1 GATGTTCCCCTACCAAAATAAGTTCATTCAAATCGAACACAGTTTATAGCGATTTCCTTG 375 ***** ***************** ******* **** ******* ********* ***** consensus_733#0 CAC-ATGTAAA-TCCATCTAGATATTAC-GATCTA-TGCTGACC-TATA-TAGACTAAGT 828 consensus_733#1 CACCATGTAAAATCCATCTAGATATTACCGATCTAATGCTGACCCTATAATAGACTAAGT 435 *** ******* **************** ****** ******** **** ********** consensus_733#0 A--TCTACTAAACATCTGT-ATCTAGG--TTCCTACTGACG--TTCTACA-GTATCT-AT 879 consensus_733#1 TATTCTACTAAACATCTGTTATCTCAGGTTTCCTACTGACAGTTTCTACAAGTATCTTAT 495 **************** **** * *********** ******* ****** ** consensus_733#0 AAGACAA--CTGCTTT--ATACTTAAGG--TCCTTAC--AAAC-TTTTGCCT-TTTGAAG 929 consensus_733#1 AAGACCAACTTGCTTCTCATACTTAAGTGTTCTTTACGTAAACATTTTGCCTATTTGTAA 555 ***** * ***** ********* ** **** **** ******** **** * consensus_733#0 ----GCTTTTAATAA----- 940 consensus_733#1 TGCCATTTTAAATAAAATAA 575 *** ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||