These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 684 fasta sequence [GCCAAGATTCGGCACGAGGCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTGCTGTAAATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAAATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCTATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAGAAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGATTATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGTTTCTATCCTGTATCTCATCCACTTGCACGTGTAT-GGTAAATTGTGGTAATTTTTTATCTCTT-GTTAATAAAACTATAATT] [+] EMBL CD083239 [GCCAAGATTCGGCACGAGGCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTGCTGTAAATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAAATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCTATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAGAAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGATTATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGTTTCTATCCTGTATCTCATCCACTTGCACGTGTATGGGTAAATNGNGGTAATTNTTTATCTCTTGGTAAATAAAACTATAt ] [-] EMBL CD073326 [ CTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTTCTGTAAATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAAATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCTATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAGAAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGATTATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGTTTCTATCCTGTATCTCATCCACTTGCACGTGTAT GGTAAATTGTGGTAATTTTTTATCTCTT GTTAATAAAACTATAATT] [-] EMBL CD076810 [ TGAGTGTTTATACTCGACATCCAATAACTAGTATAANAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTGCTGTAAATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAAATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCTATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAGAAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGATTATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGTTTCTATCCTGTATCTCATCCACTTGCACGTGTAT GGTAAATTGTGGTAATTTTTTATCTCTT GTTAATAAAACTATAATT] consensusID : consensus_7350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence [GATTATTCTAGAGTAGAAGAAAAATTATCTGAAATTGTCTTAAATCTTTATGCAATGGAATCAGGATTATTCTATTTTAGCGGTTTACTAGATGCGCAACCATCACGCGATCTTTCCTTAGAATTAGCTGCTTTAAAAGTTTTTAGTTCGGAAAAAGTATGGTCAGGCATCGATACATGTATTCAG-CTAGCTGGACGTTTTGGTCTGCTTAAAAATGTTCCATATGAACGATTTCTACGAGATGCTAGAAATCATCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTANAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTTCTGTANATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAATGAACAATGGTATTATGTCGGATAGCAGATGC] [+] EMBL CD078866 [GATTATTCTAGAGTAGAAGAAAAATTATCTGAAATTGTCTTAAATCTTTATGCAATGGAATCAGGATTATTCTATTTTAGCGGTTTACTAGATGCGCAACCATCACGCGATCTTTCCTTAGAATTAGCTGCTTTAAAAGTTTTTAGTTCGGAAAAAGTATGGTCAGGCATCGATACATGTATTCAG CTAGCTGGACGTTTTGGTCTGCTTAAAAATGTTCCATATGAACGATTTCTACGAGATGCTAGAAATCATCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTANAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTTCTGTANATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAATGAACAATGGTATTATGTCGGATAGCAGATGC] [-] EMBL CD134192 [ ATCACGCGATCTTTCCTTAGAATTAGCTGCTTTAAGAGTTTTTAGTTCGGAAAAAGTATGGTCAGGCATCGATACATGTATTCAGNCTAGCTGGACGTTTTGGTCTGCTTAAAAATGTTCCATATGAACGATTTCTACGAGATGCTAGAAATCATCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7350#0 ------------------------------------------------------------ consensus_7350#1 GATTATTCTAGAGTAGAAGAAAAATTATCTGAAATTGTCTTAAATCTTTATGCAATGGAA 60 consensus_7350#0 ------------------------------------------------------------ consensus_7350#1 TCAGGATTATTCTATTTTAGCGGTTTACTAGATGCGCAACCATCACGCGATCTTTCCTTA 120 consensus_7350#0 ------------------------------------------------------------ consensus_7350#1 GAATTAGCTGCTTTAAAAGTTTTTAGTTCGGAAAAAGTATGGTCAGGCATCGATACATGT 180 consensus_7350#0 -------------------------------------------------------GCCAA 5 consensus_7350#1 ATTCAGCTAGCTGGACGTTTTGGTCTGCTTAAAAATGTTCCATATGAACGATTTCTACGA 240 * * consensus_7350#0 GATTC-GGCACGAGGCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCT 64 consensus_7350#1 GATGCTAGAAATCATCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCT 300 *** * * * ********************************************* consensus_7350#0 GGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTT 124 consensus_7350#1 GGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTT 360 ************************************************************ consensus_7350#0 TATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAA 184 consensus_7350#1 TATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAA 420 ************************************************************ consensus_7350#0 GGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGT 244 consensus_7350#1 GGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGT 480 ************************************************************ consensus_7350#0 GATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTGCTGTAAAT 304 consensus_7350#1 GATTTANAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTTCTGTANAT 540 ****** ******************************************** ***** ** consensus_7350#0 ACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACA 364 consensus_7350#1 ACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACA 600 ************************************************************ consensus_7350#0 AATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCT 424 consensus_7350#1 A-TGAACAA-TGGTATTATGTCGGATAGCAGATGC------------------------- 633 * ******* ** ********************** consensus_7350#0 ATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAG 484 consensus_7350#1 ------------------------------------------------------------ consensus_7350#0 AAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGAT 544 consensus_7350#1 ------------------------------------------------------------ consensus_7350#0 TATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGT 604 consensus_7350#1 ------------------------------------------------------------ consensus_7350#0 TTCTATCCTGTATCTCATCCACTTGCACGTGTATGGTAAATTGTGGTAATTTTTTATCTC 664 consensus_7350#1 ------------------------------------------------------------ consensus_7350#0 TTGTTAATAAAACTATAATT 684 consensus_7350#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||