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Schistosoma mansoni
cluster # 7350 cluster # 7350       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7350#0 length = 684 sequences # 3  
consensus_7350#1 length = 633 sequences # 2  

consensusID : consensus_7350#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 684
fasta sequence
                              [GCCAAGATTCGGCACGAGGCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTGCTGTAAATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAAATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCTATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAGAAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGATTATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGTTTCTATCCTGTATCTCATCCACTTGCACGTGTAT-GGTAAATTGTGGTAATTTTTTATCTCTT-GTTAATAAAACTATAATT]

[+] EMBL CD083239             [GCCAAGATTCGGCACGAGGCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTGCTGTAAATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAAATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCTATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAGAAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGATTATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGTTTCTATCCTGTATCTCATCCACTTGCACGTGTATGGGTAAATNGNGGTAATTNTTTATCTCTTGGTAAATAAAACTATAt  ]
[-] EMBL CD073326             [                                                                                                              CTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTTCTGTAAATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAAATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCTATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAGAAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGATTATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGTTTCTATCCTGTATCTCATCCACTTGCACGTGTAT GGTAAATTGTGGTAATTTTTTATCTCTT GTTAATAAAACTATAATT]
[-] EMBL CD076810             [                                                                                                                    TGAGTGTTTATACTCGACATCCAATAACTAGTATAANAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTGCTGTAAATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAAATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCTATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAGAAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGATTATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGTTTCTATCCTGTATCTCATCCACTTGCACGTGTAT GGTAAATTGTGGTAATTTTTTATCTCTT GTTAATAAAACTATAATT]


>consensus_7350#0 GCCAAGATTCGGCACGAGGCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGAT AGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAG TGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAA GCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTC ACGTGATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTGCTGT AAATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGAT TACAAATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAAC GTCTATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTA TGAGAAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTAT AGATTATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACA GCGTTTCTATCCTGTATCTCATCCACTTGCACGTGTATGGTAAATTGTGGTAATTTTTTA TCTCTTGTTAATAAAACTATAATT



consensusID : consensus_7350#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence
                              [GATTATTCTAGAGTAGAAGAAAAATTATCTGAAATTGTCTTAAATCTTTATGCAATGGAATCAGGATTATTCTATTTTAGCGGTTTACTAGATGCGCAACCATCACGCGATCTTTCCTTAGAATTAGCTGCTTTAAAAGTTTTTAGTTCGGAAAAAGTATGGTCAGGCATCGATACATGTATTCAG-CTAGCTGGACGTTTTGGTCTGCTTAAAAATGTTCCATATGAACGATTTCTACGAGATGCTAGAAATCATCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTANAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTTCTGTANATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAATGAACAATGGTATTATGTCGGATAGCAGATGC]

[+] EMBL CD078866             [GATTATTCTAGAGTAGAAGAAAAATTATCTGAAATTGTCTTAAATCTTTATGCAATGGAATCAGGATTATTCTATTTTAGCGGTTTACTAGATGCGCAACCATCACGCGATCTTTCCTTAGAATTAGCTGCTTTAAAAGTTTTTAGTTCGGAAAAAGTATGGTCAGGCATCGATACATGTATTCAG CTAGCTGGACGTTTTGGTCTGCTTAAAAATGTTCCATATGAACGATTTCTACGAGATGCTAGAAATCATCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAAGGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGTGATTTANAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTTCTGTANATACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACAATGAACAATGGTATTATGTCGGATAGCAGATGC]
[-] EMBL CD134192             [                                                                                                     ATCACGCGATCTTTCCTTAGAATTAGCTGCTTTAAGAGTTTTTAGTTCGGAAAAAGTATGGTCAGGCATCGATACATGTATTCAGNCTAGCTGGACGTTTTGGTCTGCTTAAAAATGTTCCATATGAACGATTTCTACGAGATGCTAGAAATCATCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCTGGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTTTATACTCGAC                                                                                                                                                                                                                                                                       ]


>consensus_7350#1 GATTATTCTAGAGTAGAAGAAAAATTATCTGAAATTGTCTTAAATCTTTATGCAATGGAA TCAGGATTATTCTATTTTAGCGGTTTACTAGATGCGCAACCATCACGCGATCTTTCCTTA GAATTAGCTGCTTTAAAAGTTTTTAGTTCGGAAAAAGTATGGTCAGGCATCGATACATGT ATTCAGCTAGCTGGACGTTTTGGTCTGCTTAAAAATGTTCCATATGAACGATTTCTACGA GATGCTAGAAATCATCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCT GGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTT TATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAA GGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGT GATTTANAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTTCTGTANAT ACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACA ATGAACAATGGTATTATGTCGGATAGCAGATGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7350#0      ------------------------------------------------------------
consensus_7350#1      GATTATTCTAGAGTAGAAGAAAAATTATCTGAAATTGTCTTAAATCTTTATGCAATGGAA 60
                                                                                  

consensus_7350#0      ------------------------------------------------------------
consensus_7350#1      TCAGGATTATTCTATTTTAGCGGTTTACTAGATGCGCAACCATCACGCGATCTTTCCTTA 120
                                                                                  

consensus_7350#0      ------------------------------------------------------------
consensus_7350#1      GAATTAGCTGCTTTAAAAGTTTTTAGTTCGGAAAAAGTATGGTCAGGCATCGATACATGT 180
                                                                                  

consensus_7350#0      -------------------------------------------------------GCCAA 5
consensus_7350#1      ATTCAGCTAGCTGGACGTTTTGGTCTGCTTAAAAATGTTCCATATGAACGATTTCTACGA 240
                                                                               * *

consensus_7350#0      GATTC-GGCACGAGGCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCT 64
consensus_7350#1      GATGCTAGAAATCATCTTACTAGTATGGAATCAAATGATATCTTACGTATTATGATAGCT 300
                      *** *  * *     *********************************************

consensus_7350#0      GGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTT 124
consensus_7350#1      GGTGAAGGTATAACTGATATTATTCCTGGCTTTGAAAAAACAATCTCTGATTTGAGTGTT 360
                      ************************************************************

consensus_7350#0      TATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAA 184
consensus_7350#1      TATACTCGACATCCAATAACTAGTATAAAAACTAAATGGTTATTAAAAAGGCGAAAGCAA 420
                      ************************************************************

consensus_7350#0      GGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGT 244
consensus_7350#1      GGAAAGTATGCTGCTCAAGCTGGTTCTGGTCCGAAAGTAACCGAGGGGAATGCTTCACGT 480
                      ************************************************************

consensus_7350#0      GATTTAAAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTGCTGTAAAT 304
consensus_7350#1      GATTTANAAGATCATTTACATCCTAGCTTTGCTGATATGGCAACTCAACTTTCTGTANAT 540
                      ****** ******************************************** ***** **

consensus_7350#0      ACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACA 364
consensus_7350#1      ACACAACGATTTCAAAGTTTATGCCAAGTTTCACTTATTCAATATGGCCGAGAGATTACA 600
                      ************************************************************

consensus_7350#0      AATGAACAAATGTTATTATGTCGGATAGCAGATGCTGCAATTGATCTTTTATTAACGTCT 424
consensus_7350#1      A-TGAACAA-TGGTATTATGTCGGATAGCAGATGC------------------------- 633
                      * ******* ** **********************                         

consensus_7350#0      ATTTGTTTTGGTCGAGCTTCTAGATCGATAAGTATTGGTTTACCTCGTAATGATTATGAG 484
consensus_7350#1      ------------------------------------------------------------
                                                                                  

consensus_7350#0      AAAACTTTGACACAAACGTTTTCTAGACTAGCACTCCGACGTGTTGAACATATTATAGAT 544
consensus_7350#1      ------------------------------------------------------------
                                                                                  

consensus_7350#0      TATAAGTTTGAAATCGATCGGTATCAACATCGGACCGCTAGTGAATTACTGACACAGCGT 604
consensus_7350#1      ------------------------------------------------------------
                                                                                  

consensus_7350#0      TTCTATCCTGTATCTCATCCACTTGCACGTGTATGGTAAATTGTGGTAATTTTTTATCTC 664
consensus_7350#1      ------------------------------------------------------------
                                                                                  

consensus_7350#0      TTGTTAATAAAACTATAATT 684
consensus_7350#1      --------------------
                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)