These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence [CCGGCCGCGGGAATTTGATTGCCCCGAACATCTACAGCCATCAATATCACCAACAAACTGATAAATAATAAAAAGACAATTGTCAATTGCACACACACACACACAACACCAAATCTCTCATCAAATTTATGCGTTTCTTCAATACTATCTCAGATAGAGCCCAATCACTGATCATAGAGGGCAAGTTATCATCACCAAATTACGTCTCGCTTATCTAATTGTAAATTTAGTTACACAACAACAACAAACACACAAACAGTCAGTCAACCATCGAACATTACATAAACACCATCACAACACCACACACAACTATACTACCACATAAATCTACTCACCTCTCTTATCACTCGACACAATTAACGCCACAACCAGTTGGTACAAACACCAAATCACACCAACTCTCTACAATATAAACAAAATTTACATTATTAACACACAAATACACCACAATCCAACACACAATATACACTTGCATGCAACATTTCAGTATTCACTAAACTATATCATGTCTCGGTCAACAGACCGTCGTGAATATATTCACATCATATCATACACATCTCTCTCACTCACTCACACACACACACACACAACCAACATCTCATTCATTCATCCAT] [-] EMBL CD089939 [CCGGCCGCGGGAATTTGATTGCCCCGAACATCTACAGCCATCAATATCACCAACAAACTGATAAATAATAAAAAGACAATTGTCAATTGCACACACACACACACAACACCAAATCTCTCATCAAATTTATGCGTTTCTTCAATACTATCTCAGATAGAGCCCAATCACTGATCATAGAGGGCAAGTTATCATCACCAAATTACGTCTCGCTTATCTAATTGTAAATTTAGTTACACAACAACAACAAACACACAAACAGTCAGTCAACCATCGAACATTACATAAACACCATCACAACACC ] [+] EMBL CD187599 [ GGCAAGTTATCATCACCAAATTACGTCTCGCTTACCTAATTGCAAATTTAGTTACACAACAACAACAAACACACAAACAGTCAGTCAACCATCGAACATTACATAAACACCATCACAACACCACACACAACTATACTACCACATAAATCTACTCACCTCTCTTATCACTCGACACAATTAACGCCACAACCAGTTGGTACAAACACCAAATCACACCAACTCTCTACAATATAAACAAAATTTACATTATTAACACACAAATACACCACAATCCAACACACAATATACACTTGCATGCAACATTTCAGTATTCACTAAACTATATCATGTCTCGGTCAACAGACCGTCGTGAATATATTCACATCATATCATACACATCTCTCTCACTCACTCACACACACACACACACAACCAACATCTCATTCATTCATCCAT] consensusID : consensus_7364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [CTTTTACAGCTATACTTAACTCATCTGATGGATGCATGAATTCTAGTTAACTCTAGACACTCTTTTCTTTTTCTTTTCAAAATTAATGTGATGGAATAATACGTGATCGTCGTGAACTGATCACATGGGAAATTTTTCATATTCCAGGAGACTAGTTAACTAAAAGGATTCAGTTGAAAGAGTATAGTAGTTTAGATTTTTCAATGAAATGCATACAACTGTTTGCAGTAACCAGTGGAGTTTAACCAAGTCTGTTGTAGAGATATCAACTCACTGAAGACGATTGGTGAACGGTTACTGAGCTTCGCGGATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGTATCAGTGGTCTATCGGTTAAGTGCTCTGGCACGAGACTGGTAGGTCCTGGGTTCGAATCTGG] [+] EMBL CD128176 [CTTTTACAGCTATACTTAACTCATCTGATGGATGCATGAATTCTAGTTAACTCTAGACACTCTTTTCTTTTTCTTTTCAAAATTAATGTGATGGAATAATACGTGATCGTCGTGAACTGATCACATGGGAAATTTTTCATATTCCAGGAGACTAGTTAACTAAAAGGATTCAGTTGAAAGAGTATAGTAGTTTAGATTTTTCAATGAAATGCATACAACTGTTTGCAGTAACCAGTGGAGTTTAACCAAGTCTGTTGTAGAGATATCAACTCACTGAAGACGATTGGTGAACGGTTACTGAGCTTCGCGGATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGTATCAGTGGTCTATCGGTTAAGTGCTCTGGCACGAGACTGGTAGGTCCTGGGTTCGAATCTGG] consensusID : consensus_7364#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [TAATTTTATCCTATATTTGGGAATGTTTGAAGTGTTTTGTATAATAATTCATTAATAAGTGAGAATACAGTTGTGGGCGCGAAAATAAGATGTCCGTCAACGGTTTTATTGTTTTCTTTTTAGTTAGTTACAATTTAGTGAGCGCGATCAATGTGCAAGTGAGAATGTTTGCTTACTGAAGAGTCGTTTTGCAAAGACCATATTTAATAAAAATTAATAAAAAATTATTTTATAGAGTTCAGATCATGAGTCAATTGAAGCTAGACCACCATCGAAAACCTGGAAGCACTGGAAGGCCGTTTCGTCCTATTATGGGACTCCTCAGCAGTGCGCATCCACGATCCCGCACTCGCGAGATTCGAACCCAGGATCTACCAGTCTCGCGCAAGAGCACTTAACCGATAAGACA] [+] EMBL CD181973 [TAATTTTATCCTATATTTGGGAATGTTTGAAGTGTTTTGTATAATAATTCATTAATAAGTGAGAATACAGTTGTGGGCGCGAAAATAAGATGTCCGTCAACGGTTTTATTGTTTTCTTTTTAGTTAGTTACAATTTAGTGAGCGCGATCAATGTGCAAGTGAGAATGTTTGCTTACTGAAGAGTCGTTTTGCAAAGACCATATTTAATAAAAATTAATAAAAAATTATTTTATAGAGTTCAGATCATGAGTCAATTGAAGCTAGACCACCATCGAAAACCTGGAAGCACTGGAAGGCCGTTTCGTCCTATTATGGGACTCCTCAGCAGTGCGCATCCACGATCCCGCACTCGCGAGATTCGAACCCAGGATCTACCAGTCTCGCGCAAGAGCACTTAACCGATAAGACA] consensusID : consensus_7364#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence [AGCGTTTATTCAATACTATATCAGATAGAGCCCAATCACTGATCATAGAGGGCAAGTTATCATCACCAAATTACGTCTCGCTTACCGAATTACAAACAGATTTACACAACAACAACAACAACAACAACAACAAACAATCACTCAACCATCGAACATTACATAAACACCATAACAACACCACACACAACTATACTACCACATAAATCTACTCACCTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTACA] [-] EMBL CD155152 [AGCGTTTATTCAATACTATATCAGATAGAGCCCAATCACTGATCATAGAGGGCAAGTTATCATCACCAAATTACGTCTCGCTTACCGAATTACAAACAGATTTACACAACAACAACAACAACAACAACAACAAACAATCACTCAACCATCGAACATTACATAAACACCATAACAACACCACACACAACTATACTACCACATAAATCTACTCACCTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7364#0 CCGGCCGCGGGAATTTGATTGCCCCGAACATCTACAGCCATCAATATCACCAACAAACTG 60 consensus_7364#3 ------------------------------------------------------------ consensus_7364#1 ------------------------------------------------------------ consensus_7364#2 ------------------------------------------------------------ consensus_7364#0 ATAAATAATAAAAAGACAATTGTCAATTGCACACACACACACACAACACCAAATCTCTCA 120 consensus_7364#3 ------------------------------------------------------------ consensus_7364#1 -------------------------------------CTTTTACAGCTATACTTAACTCA 23 consensus_7364#2 ------------------------------TAATTTTATCCTATATTTGGGAATGTTTGA 30 consensus_7364#0 TCAAATTTATGCGTTTCTTCAATACTATCTCAGA-TAGAGCCCAATCACTGATCATAGAG 179 consensus_7364#3 ---------AGCGTTTATTCAATACTATATCAGA-TAGAGCCCAATCACTGATCATAGAG 50 consensus_7364#1 TCTGATGGATGCATGAATTCTAGTTAACTCTAGA-CACTCTTTTCTTTTTCTTTTCAAAA 82 consensus_7364#2 AGTGTTTTGTATAATAATTCATTAATAAGTGAGAATACAGTTGTGGGCGCGAAAATAAGA 90 *** * *** * * consensus_7364#0 GGCAAGTTATCATCACCAAATTACGTCTCGCTTATCTAATTGTAAATTTAGTTACAC--- 236 consensus_7364#3 GGCAAGTTATCATCACCAAATTACGTCTCGCTTACCGAATTACAAACAGATTTACAC--- 107 consensus_7364#1 TTAATGTGAT-GGAATAATACGTGATCGTCGTGAACTGATCACATGGGAAATTTTTC--- 138 consensus_7364#2 TGTCCGTCA--ACGGTTTTATTGTTTTCTTTTTAGTTAGTTACAATTTAGTGAGCGCGAT 148 ** * * * * * * * * consensus_7364#0 --A-ACAACAACAAACACA---------CAAACAGTCAGTCAACCATCGAACATTACATA 284 consensus_7364#3 --A-ACAACAACAACAACAACAACAA--CAAACAATCACTCAACCATCGAACATTACATA 162 consensus_7364#1 --ATATTCCAGGAGACTAGTTAACTA--AAAGGATTCAGTTGAAAGAGTATAGTAGTTTA 194 consensus_7364#2 CAATGTGCAAGTGAGAATGTTTGCTTACTGAAGAGTCGTTTTGCAAA-GACCATATTTAA 207 * * * * ** * * * * consensus_7364#0 AACACCATCACAACACCACACACAACTAT-----ACTACCACATAAATCTACTCACCTCT 339 consensus_7364#3 AACACCATAACAACACCACACACAACTAT-----ACTACCACATAAATCTACTCACCTCT 217 consensus_7364#1 GATTTTTCAATGA-AATGCATACAACTGTTTGCAGTAACCAGTGGAGTTTAACCAAGTCT 253 consensus_7364#2 TAAAAATTAATAAAAAATTATTTTATAGAGTTCAGATCATGAGTCAATTGAAGCTAGACC 267 * * * * * * * * * * * consensus_7364#0 CTTATCACTCGACACAATTAACGCCACAACCAGTTGGT--ACAAACACCAAATCACACCA 397 consensus_7364#3 TTTATTACTCGACATAATTAGCGCCACAACCAGTTCGT--ACA----------------- 258 consensus_7364#1 GTTGTAGA--GATATCAACT-CACTGAAGACGATTGGTGAACGGTTACTGAGCTTCGCGG 310 consensus_7364#2 ACCATCGAAAACCTGGAAGCACTGGAAGGCCGTTTCGT--CCTATTATGGGACTCCTCAG 325 * * * * ** ** * consensus_7364#0 ACTCTCTACAATATAAACAAAATTTACATTATTAACACACAAATACACCACAATCCAACA 457 consensus_7364#3 ------------------------------------------------------------ consensus_7364#1 ATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGTATCAGTGGTCTATCGGTTAAGT 370 consensus_7364#2 -CAGTGCGCATCCACGATCCCGCACTCGCGAGATTCGAACCCAGGATCTACCAGTCTCGC 384 consensus_7364#0 CACAATATACACTTGCATGCAACATTTCAGTATTCACTAAACTATATCATGTCTCGGTCA 517 consensus_7364#3 ------------------------------------------------------------ consensus_7364#1 GCTCTGGCACGAGACTGGTAGGTCCTGGGTTCGAATCTGG-------------------- 410 consensus_7364#2 GCAAGAGCACTTAACCGATAAGACA----------------------------------- 409 consensus_7364#0 ACAGACCGTCGTGAATATATTCACATCATATCATACACATCTCTCTCACTCACTCACACA 577 consensus_7364#3 ------------------------------------------------------------ consensus_7364#1 ------------------------------------------------------------ consensus_7364#2 ------------------------------------------------------------ consensus_7364#0 CACACACACACAACCAACATCTCATTCATTCATCCAT 614 consensus_7364#3 ------------------------------------- consensus_7364#1 ------------------------------------- consensus_7364#2 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||