These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7365#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 593 fasta sequence [GACGTATAATTCGCGAAATCCAGCTGTCAAACGGTTGATGAAAGAAGCACAAGAGCTCTAGAAGCCTACCGAACTATACTTTGCGAGACCTCTAGAGGATAATCTGTTCGAATGGCACTTCACGATTAGAGGTCCTGAAGATTCTGACTTTCAGGGCGGTTTATATCATGGAAGAATTCTTTTTCCTTCAGAATATCCGATGAAGCCTCCAAATATCGTACTGTTAACTCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTATTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAGCTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAAAAGAAGAACGTCAGTTATTGGCTCGCAAATCACAGAGTTACGTTTGCAGCATATGTGGACCAACTAACAATTTACTTCTACCCTTAACTACCGCTTCATCATCAATGAATGAAGAAGCCAATGAAGCTGCTGCTCAAATATCTATGATGAGTGAGGAAGAATTTAGAAATAAAAAAGCATTGGCTAATTCAAACACTTCTC] [+] EMBL AI975908 [GACGTATAATTCGCGAAATCCAGCTGTCAAACGGTTGATGAAAGAAGCACAAGAGCTCTAGAAGCCTACCGAACTATACTTTGCGAGACCTCTAGAGGATAATCTGTTCGAATGGCACTTCACGATTAGAGGTCCTGAAGATTCTGACTTTCAAGGCGGTTTATATAATGGCAGAATTCTTTTTCCTTCATAATATCCGATGAAGCCTGCAAATATCGTACTGTTAACTC ] [+] EMBL CD096102 [ CGAATGGCACTTCACGATTAGAGGTCCTGAAGATTCTGACTTTCAGGGCGGTTTATATCATGGAAGAATTCTTTTTCCTTCAGAATATCCGATGAAGCCTCCAAATATCGTACTGTTAACTCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTATTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAGCTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAAAAGGAGAACGTCAGTTATTGGCTCGCAAATCACAGAGTTACGTTTGCAGCATATGTGGACCAACTAACAATTTACTTCTACCCTTAACTACCGCTTCATCATCAATGAATGAAGAAGCCAATGAAGCTGCTGCTCANATATCTATGATGAGTGAGGAAGAATTTAGAGATAAAAAAGCATTGGCTAATTCANACACTTCTC] [+] EMBL CD096062 [ CGAATGGCACTTCACGATTAGAGGTCCTGAAGATTCTGACTTTCAGGGCGGTTTATATCATGGAAGAATTCTTTTTCCTTCAGAATATCCGATGAAGCCTCCAAATATCGTACTGTTAACTCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTATTTCAGGACATCATCCCGAATCGTGGAGACCATCATGGTCTATTCGTACTACATTGTTAGCTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAAAAGAAGAACGTCAGTTATTGGCTCGCAAATCACAGAGTTACGTTTGCAGCATATGTGGACCAACTAACAATTTACTTCTACCCTTAACTACCGCTTCATCATCAATGAATGAAGAAGCCAATGAAGCTGCTGCTCAAATATCTATGATGAGTGAGGAAGAATTTAGAAATAAAAAAGCATTGGCTAATTCAAACA ] [+] EMBL CD095866 [ CGAATGGCACTTCACGATTAGAGGTCCTGAAGATTCTGACTTTCAGGGCGGTTTATATCATGGAAGAATTCTTTTTCCTTCAGAATATCCGATGAAGCCTCCAAATATCGTACTGTTAACTCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTATTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAGCTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAAAAGAAGAACGTCAGTTATTGGCTCGCAAATCACAGAGTTACGTTTGCAGCATATGTGGACCAACTAACAATTTACTTCTACCCTTAACTACCGCTTCATCATCAATGAACGAAGAAGCCAATGAAGCTGCTGCTCAAATATCTATGATGAGTGAGGAAGAATTTAGAAATACAAAAGCATTGGCTAATTCAAACA ] consensusID : consensus_7365#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [TTAGCCAGAATAACAGCATCGTTTGGATTATAAAGTATATAACTCAATATCCTGGGATGTTGTCAATATAGCTCGTAGTGGAGATTAGTAGCGTCCGTATTGTAATTTAATTTTGCATTTTTAAAAACTACAAATAGGAAATTTAGGATGAATGCTTTTATTTAACCTATTTCCTTTGGTATTATTCTGACTTTCACTCTTTATTTTCTCACATTATTATTTTCTCTCCTCTTACATTCCTTGATATGTTATTTTATCAAGCATTTTTTGTTACGATAGCATCGCAAAATACTCTAAAATGTAGTCACTTTGTGGTCCACTTAAGTACGTATAAGGTGTTCCTAAATATCTATTAACACACCATTTTTTCTCTTCAGCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTATTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAGCTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAAAAGAAGAACGTCAGTTATTGGCTCGCAACTGACTGACTATTATTTTAC] [+] EMBL CD202351 [TTAGCCAGAATAACAGCATCGTTTGGATTATAAAGTATATAACTCAATATCCTGGGATGTTGTCAATATAGCTCGTAGTGGAGATTAGTAGCGTCCGTATTGTAATTTAATTTTGCATTTTTAAAAACTACAAATAGGAAATTTAGGATGAATGCTTTTATTTAACCTATTTCCTTTGGTATTATTCTGACTTTCACTCTTTATTTTCTCACATTATTATTTTCTCTCCTCTTACATTCCTTGATATGTTATTTTATCAAGCATTTTTTGTTACGATAGCATCGCAAAATACTCTAAAATGTAGTCACTTTGTGGTCCACTTAAGTACGTATAAGGTGTTCCTAAATATCTATTAACACACCATTTTTTCTCTTCAGCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTATTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAGCTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAAAAGAAGAACGTCAGTTATTGGCTCGCAACTGACTGACTATTATTTTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7365#0 ------------------------------------------------------------ consensus_7365#1 TTAGCCAGAATAACAGCATCGTTTGGATTATAAAGTATATAACTCAATATCCTGGGATGT 60 consensus_7365#0 ------------------------------------------------GACGTATAATTC 12 consensus_7365#1 TGTCAATATAGCTCGTAGTGGAGATTAGTAGCGTCCGTATTGTAATTTAATTTTGCATTT 120 * * *** consensus_7365#0 GCGAAATCCAGCTGTCAAACGGTT--GATGAAAGA--------AGCACAAGAGCTCTAGA 62 consensus_7365#1 TTAAAAACTACAAATAGGAAATTTAGGATGAATGCTTTTATTTAACCTATTTCCTTTGGT 180 *** * * * * ** ****** * * * * ** * * consensus_7365#0 AGCCTACCGAACTATACTTTGCGAGACCTCTAGAGGATAATCTGT-TCGAATGGCACTTC 121 consensus_7365#1 ATTATTCTGACTTTCACTCTTTATTTTCTCACATTATTATTTTCTCTCCTCTTACATTCC 240 * * * ** * *** * *** ** * * * ** * ** * * consensus_7365#0 ACGATTAGAGGTCCTGAAGATTCTGACTT-TCAGGGCGGTTT------ATATCATGGAA- 173 consensus_7365#1 TTGATATGTTATTTTATCAAGCATTTTTTGTTACGATAGCATCGCAAAATACTCTAAAAT 300 *** * * * * * ** * * * * * *** * ** consensus_7365#0 GAATTCTTTTT-----CCTTCAGAATATCCG-ATGAAGCCTCCAAATATC-------GTA 220 consensus_7365#1 GTAGTCACTTTGTGGTCCACTTAAGTACGTATAAGGTGTTCCTAAATATCTATTAACACA 360 * * ** *** ** * ** * * * * ******* * consensus_7365#0 CTGTTAACTC--------CAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTA 272 consensus_7365#1 CCATTTTTTCTCTTCAGCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTA 420 * ** ** ****************************************** consensus_7365#0 TTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAG 332 consensus_7365#1 TTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAG 480 ************************************************************ consensus_7365#0 CTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAA 392 consensus_7365#1 CTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAA 540 ************************************************************ consensus_7365#0 AAGAAGAACGTCAGTTATTGGCTCGCAAATCACAGAGTTACGTTTGCAGCATATGTGGAC 452 consensus_7365#1 AAGAAGAACGTCAGTTATTGGCTCGCAACTGACTGACTATTATTTTAC------------ 588 **************************** * ** ** * *** consensus_7365#0 CAACTAACAATTTACTTCTACCCTTAACTACCGCTTCATCATCAATGAATGAAGAAGCCA 512 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 ATGAAGCTGCTGCTCAAATATCTATGATGAGTGAGGAAGAATTTAGAAATAAAAAAGCAT 572 consensus_7365#1 ------------------------------------------------------------ consensus_7365#0 TGGCTAATTCAAACACTTCTC 593 consensus_7365#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||