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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7370 cluster # 7370       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7370#0 length = 708 sequences # 4  
consensus_7370#1 length = 484 sequences # 1  

consensusID : consensus_7370#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 708
fasta sequence
                              [ACGAGGGGTTGTTTATAAAGATGTAAAATCTCGTAAAGTCTATTATCCTTATGATCCTGCACCATTTTGTGAGTTCTGTACGTATTAATAGCCCACATTGTTTAGTTAAAATGCTTCAAGATCCTGGAACATGTAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTTATTATACATTACGTGTTTATTCAACAGCACCATTTACCTTGTCAAAAATCAAAGATCCCTATACTATATCAAAACAAATTACTGGTGAATGGAAAGGATCAAATGCTGGCGGCTGTATAAATGACAAAGAAAGTTATAGTACTAATCCACGATTCGAGATTAATGTACCAGATAATGATTGTGATAATCAGCTGTTGATTGAATTACGTGGACCAAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAGAAGAGGATATGTTGTTCTAGAACAAGCTGGTCTTTCTGGCGGTGTATACAATGTAATTGTTTCCACTTATCGACCTGGCCAAGAAGGACCATTTATTCTCTCGGTTAAATCCATAAGAAATTTTTCAATAACTCCCATATGATGAAGATAATTAAGAATATTATCACATCTCCCTCCTNCTCATTGTCATCATTACTCTGGTTTCTTTGAAGTCTTAC]

[+] EMBL CD084090             [ACGAGGGGTTGTTTATAAAGATGTAAAATCTCGTAAAGTCTATTATCCTTATGATCCTGCACCATTTTGTGAGTTCTGTACGTATTAATAGCCCACATTGTTTAGTTAAAATGCTTCAAGATCCTGGAACATGTAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTTATTATACATTACGTGTTTATTCAACAGCACCATTTACCTTGTCAAAAATCAAAGATCCCTATACTATATCAAAACAAATTACTGGTGAATGGAAAGGATCAAATGCTGGCGGCTGTATAAATGACAAAGAAAGTTATAGTACTAATCCACGATTCGAGATTAATGTACCAGATAATGATTGTGATAATCAGCTGTTGATTGAATTACGTGGACCAAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGC                                                                                                                                                                                                                                                                                ]
[+] EMBL CD181268             [                                  AAAGTCTATTATCCTTATGATCCTGCACCATTTTGTGA TTCTGTACGTATTAATAGCCCACATTGTTTAGTTAAAATGCTTCAAGATCCTGGAACATGTAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTTATTATACATTACGTGTTTATTCAACAGCACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD081479             [                                                                                         AGCCCA ATTGTTTAGTTAAAATGC ACTAGATCCTGGAACAAGCAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTTATTATACATTACGTGTTTATTCAACAGCACCATTTACCTTGTCAAAAATCAAAGATCCCTATACTATATCAAAACAAATTACTGGTGAATGGAAAGGATCAAATGCTGGCGGCTGTATAAATGACAAAGAAAGTTATAGTACTAATCCACGATTCGAGATTAATGTACCAAATAATGATTGTGATAATCAGCTGTTGATTGAATTACGTGGACCAAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAGAAGAGGATATGTTGTTCTAGAACAAGCTGGTCTTTCTGGCGGTGTATACAATGTAATTGTTTCCACTTATCGACCTGGCCAAGAAGGACCATTTATTCTCTCGGTTAAATCCATAAGAAATTTTTCAATAACTCCCATATGATGAAGATAATTAAGAATATTATCACATCTCCCTCCTNCTCATTGTCATCATTACTCTGGTTTCTTTGAAGTCTTAC]
[-] EMBL CD113148             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCTCTCGGTTAAATCCATAAGAAATTTTTCAATAACTCCCATACGATGAAGATAATGAAGAATATTATCACATCTCCCTCCTCCTCATTGTCATCATTACTCTGTTTTCTTTGAAGTCT   ]


>consensus_7370#0 ACGAGGGGTTGTTTATAAAGATGTAAAATCTCGTAAAGTCTATTATCCTTATGATCCTGC ACCATTTTGTGAGTTCTGTACGTATTAATAGCCCACATTGTTTAGTTAAAATGCTTCAAG ATCCTGGAACATGTAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTT ATTATACATTACGTGTTTATTCAACAGCACCATTTACCTTGTCAAAAATCAAAGATCCCT ATACTATATCAAAACAAATTACTGGTGAATGGAAAGGATCAAATGCTGGCGGCTGTATAA ATGACAAAGAAAGTTATAGTACTAATCCACGATTCGAGATTAATGTACCAGATAATGATT GTGATAATCAGCTGTTGATTGAATTACGTGGACCAAGAGATTATGCACTGGGCTTAGAAT TAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTG GAGATTACAGAAGAGGATATGTTGTTCTAGAACAAGCTGGTCTTTCTGGCGGTGTATACA ATGTAATTGTTTCCACTTATCGACCTGGCCAAGAAGGACCATTTATTCTCTCGGTTAAAT CCATAAGAAATTTTTCAATAACTCCCATATGATGAAGATAATTAAGAATATTATCACATC TCCCTCCTNCTCATTGTCATCATTACTCTGGTTTCTTTGAAGTCTTAC



consensusID : consensus_7370#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence
                              [ATTTTGATTATTTTATGACCTATTTTACAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAGGTAATTAATTGTGGTGAAAAAAATAGCTAATTGACATTTATATTTAACAGATTCTTAATTGTATTCATAGGTTCCATCCCCTTTCTCTGCCTACGTGGTTCTGAGCATTCGATTAGCATCAGTAGTCTTCATATTAAGCTTGTGACCCAGTTTATGTATTTGAACCCATGTACTCTTATTCAGTTACATTAACCGTACTCGATTAGCTTATTTTACAGTTTTAGTTCTTAGTATGCAGTTTGCAGTGCATGTCAATTGCTTCAGATTTCACGCTAATTAGTTTAACTAGATTTTTGTATTTCACTTAGTCCTTATTCGACCAGCTTAATAGAAGAATAAGTGCTTTTGGGCGGTAGTTGAA]

[+] EMBL CD165454             [ATTTTGATTATTTTATGACCTATTTTACAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAGGTAATTAATTGTGGTGAAAAAAATAGCTAATTGACATTTATATTTAACAGATTCTTAATTGTATTCATAGGTTCCATCCCCTTTCTCTGCCTACGTGGTTCTGAGCATTCGATTAGCATCAGTAGTCTTCATATTAAGCTTGTGACCCAGTTTATGTATTTGAACCCATGTACTCTTATTCAGTTACATTAACCGTACTCGATTAGCTTATTTTACAGTTTTAGTTCTTAGTATGCAGTTTGCAGTGCATGTCAATTGCTTCAGATTTCACGCTAATTAGTTTAACTAGATTTTTGTATTTCACTTAGTCCTTATTCGACCAGCTTAATAGAAGAATAAGTGCTTTTGGGCGGTAGTTGAA]


>consensus_7370#1 ATTTTGATTATTTTATGACCTATTTTACAGAGATTATGCACTGGGCTTAGAATTAATTCG TATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTA CAGGTAATTAATTGTGGTGAAAAAAATAGCTAATTGACATTTATATTTAACAGATTCTTA ATTGTATTCATAGGTTCCATCCCCTTTCTCTGCCTACGTGGTTCTGAGCATTCGATTAGC ATCAGTAGTCTTCATATTAAGCTTGTGACCCAGTTTATGTATTTGAACCCATGTACTCTT ATTCAGTTACATTAACCGTACTCGATTAGCTTATTTTACAGTTTTAGTTCTTAGTATGCA GTTTGCAGTGCATGTCAATTGCTTCAGATTTCACGCTAATTAGTTTAACTAGATTTTTGT ATTTCACTTAGTCCTTATTCGACCAGCTTAATAGAAGAATAAGTGCTTTTGGGCGGTAGT TGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7370#0      ACGAGGGGTTGTTTATAAAGATGTAAAATCTCGTAAAGTCTATTATCCTTATGATCCTGC 60
consensus_7370#1      ------------------------------------------------------------
                                                                                  

consensus_7370#0      ACCATTTTGTGAGTTCTGTACGTATTAATAGCCCACATTGTTTAGTTAAAATGCTTCAAG 120
consensus_7370#1      ------------------------------------------------------------
                                                                                  

consensus_7370#0      ATCCTGGAACATGTAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTT 180
consensus_7370#1      --------------------------------------------------------ATTT 4
                                                                              ****

consensus_7370#0      ATTATACATTACGTGTTTATTCAACAGC-ACCATTTACCTTGTCAAAAATCAAAG-ATCC 238
consensus_7370#1      TGATTATTTTATG-ACCTATTTTACAGAGATTATGCACTGGGCTTAGAATTAATTCGTAT 63
                          **  *** *    ****  ****  *  **  **   *   * *** **    *  

consensus_7370#0      CTATACTATATCAAAACAAATTACTGGTGAATGGAAAGGATCAAATGCTGGCGGCTGTA- 297
consensus_7370#1      ATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAG 123
                       * * *** *    * ***    *   * *    **  ****** * **** *  *  * 

consensus_7370#0      -TAAATGACAAAGAAAGTTATAGTA-CTAATCCACGATTCGAGATTAATGTACCAGATAA 355
consensus_7370#1      GTAATTAATTGTGGTGAAAAAAATAGCTAATTGAC-ATTTATATTTAACAGAT----TCT 178
                       *** * *    *      * * ** *****  ** ***     ****   *     *  

consensus_7370#0      TGATTGTGATAATCAGCTGTTGATTGAATTACGTGGACCAAGAGATTATGCACTGGGCTT 415
consensus_7370#1      TAATTGTATTCATAGGTT--CCATCCCCTTTCTCTGCCTACGTGGTT-----CTGAGCAT 231
                      * *****  * **  * *    **    ** *   * * * * * **     *** ** *

consensus_7370#0      AGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAAC 475
consensus_7370#1      TCGATTAGCATCAGTAGTCTTCATATTAAGCTTGTGACCCAGTTTATGTATTTGAAC--C 289
                         ****       **      * *           ***** *      * * ** *  *

consensus_7370#0      TACTGGAGATTACAGAAGAGGATATGTTGTTCTAGAACAAGCTGGTCTTTCTGGC--GGT 533
consensus_7370#1      CATGTACTCTTATTCAGTTACATTAACCGTACTCGATTA-GCTTATTTTACAGTTTTAGT 348
                       *       ***   *     **     ** ** **  * ***  * ** * *     **

consensus_7370#0      GTATACAATGTAATTGTTTCCACTTATCGACCTGGCCAAGAAGGACCATTTATTCTCTCG 593
consensus_7370#1      TCTTAGTATGCAGTTTGCAGTGCATGTCAAT-TGCTTCAGATTTCACGCTAATTAGTTTA 407
                         **  *** * **       * * ** *  **    ***     *  * ***   *  

consensus_7370#0      GTTAAATCCATAAGAAATTTTTCAATAACTCCCATATGATGAAGATAATTAAGAATATTA 653
consensus_7370#1      ACTAGATTTTTGTA----TTTCACTTAGTCCTTATTCGACCAGCTTAAT-AGAAGAATAA 462
                        ** **   *       ***    **   *  **  **  *   **** *  *  ** *

consensus_7370#0      TCACATCTCCCTCCTNCTCATTGTCATCATTACTCTGGTTTCTTTGAAGTCTTAC 708
consensus_7370#1      GTGCTTTTGGGCGGTAGTTGAA--------------------------------- 484
                         * * *      *  *                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)