These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 708 fasta sequence [ACGAGGGGTTGTTTATAAAGATGTAAAATCTCGTAAAGTCTATTATCCTTATGATCCTGCACCATTTTGTGAGTTCTGTACGTATTAATAGCCCACATTGTTTAGTTAAAATGCTTCAAGATCCTGGAACATGTAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTTATTATACATTACGTGTTTATTCAACAGCACCATTTACCTTGTCAAAAATCAAAGATCCCTATACTATATCAAAACAAATTACTGGTGAATGGAAAGGATCAAATGCTGGCGGCTGTATAAATGACAAAGAAAGTTATAGTACTAATCCACGATTCGAGATTAATGTACCAGATAATGATTGTGATAATCAGCTGTTGATTGAATTACGTGGACCAAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAGAAGAGGATATGTTGTTCTAGAACAAGCTGGTCTTTCTGGCGGTGTATACAATGTAATTGTTTCCACTTATCGACCTGGCCAAGAAGGACCATTTATTCTCTCGGTTAAATCCATAAGAAATTTTTCAATAACTCCCATATGATGAAGATAATTAAGAATATTATCACATCTCCCTCCTNCTCATTGTCATCATTACTCTGGTTTCTTTGAAGTCTTAC] [+] EMBL CD084090 [ACGAGGGGTTGTTTATAAAGATGTAAAATCTCGTAAAGTCTATTATCCTTATGATCCTGCACCATTTTGTGAGTTCTGTACGTATTAATAGCCCACATTGTTTAGTTAAAATGCTTCAAGATCCTGGAACATGTAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTTATTATACATTACGTGTTTATTCAACAGCACCATTTACCTTGTCAAAAATCAAAGATCCCTATACTATATCAAAACAAATTACTGGTGAATGGAAAGGATCAAATGCTGGCGGCTGTATAAATGACAAAGAAAGTTATAGTACTAATCCACGATTCGAGATTAATGTACCAGATAATGATTGTGATAATCAGCTGTTGATTGAATTACGTGGACCAAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGC ] [+] EMBL CD181268 [ AAAGTCTATTATCCTTATGATCCTGCACCATTTTGTGA TTCTGTACGTATTAATAGCCCACATTGTTTAGTTAAAATGCTTCAAGATCCTGGAACATGTAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTTATTATACATTACGTGTTTATTCAACAGCACC ] [+] EMBL CD081479 [ AGCCCA ATTGTTTAGTTAAAATGC ACTAGATCCTGGAACAAGCAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTTATTATACATTACGTGTTTATTCAACAGCACCATTTACCTTGTCAAAAATCAAAGATCCCTATACTATATCAAAACAAATTACTGGTGAATGGAAAGGATCAAATGCTGGCGGCTGTATAAATGACAAAGAAAGTTATAGTACTAATCCACGATTCGAGATTAATGTACCAAATAATGATTGTGATAATCAGCTGTTGATTGAATTACGTGGACCAAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAGAAGAGGATATGTTGTTCTAGAACAAGCTGGTCTTTCTGGCGGTGTATACAATGTAATTGTTTCCACTTATCGACCTGGCCAAGAAGGACCATTTATTCTCTCGGTTAAATCCATAAGAAATTTTTCAATAACTCCCATATGATGAAGATAATTAAGAATATTATCACATCTCCCTCCTNCTCATTGTCATCATTACTCTGGTTTCTTTGAAGTCTTAC] [-] EMBL CD113148 [ TCTCTCGGTTAAATCCATAAGAAATTTTTCAATAACTCCCATACGATGAAGATAATGAAGAATATTATCACATCTCCCTCCTCCTCATTGTCATCATTACTCTGTTTTCTTTGAAGTCT ] consensusID : consensus_7370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [ATTTTGATTATTTTATGACCTATTTTACAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAGGTAATTAATTGTGGTGAAAAAAATAGCTAATTGACATTTATATTTAACAGATTCTTAATTGTATTCATAGGTTCCATCCCCTTTCTCTGCCTACGTGGTTCTGAGCATTCGATTAGCATCAGTAGTCTTCATATTAAGCTTGTGACCCAGTTTATGTATTTGAACCCATGTACTCTTATTCAGTTACATTAACCGTACTCGATTAGCTTATTTTACAGTTTTAGTTCTTAGTATGCAGTTTGCAGTGCATGTCAATTGCTTCAGATTTCACGCTAATTAGTTTAACTAGATTTTTGTATTTCACTTAGTCCTTATTCGACCAGCTTAATAGAAGAATAAGTGCTTTTGGGCGGTAGTTGAA] [+] EMBL CD165454 [ATTTTGATTATTTTATGACCTATTTTACAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAGGTAATTAATTGTGGTGAAAAAAATAGCTAATTGACATTTATATTTAACAGATTCTTAATTGTATTCATAGGTTCCATCCCCTTTCTCTGCCTACGTGGTTCTGAGCATTCGATTAGCATCAGTAGTCTTCATATTAAGCTTGTGACCCAGTTTATGTATTTGAACCCATGTACTCTTATTCAGTTACATTAACCGTACTCGATTAGCTTATTTTACAGTTTTAGTTCTTAGTATGCAGTTTGCAGTGCATGTCAATTGCTTCAGATTTCACGCTAATTAGTTTAACTAGATTTTTGTATTTCACTTAGTCCTTATTCGACCAGCTTAATAGAAGAATAAGTGCTTTTGGGCGGTAGTTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7370#0 ACGAGGGGTTGTTTATAAAGATGTAAAATCTCGTAAAGTCTATTATCCTTATGATCCTGC 60 consensus_7370#1 ------------------------------------------------------------ consensus_7370#0 ACCATTTTGTGAGTTCTGTACGTATTAATAGCCCACATTGTTTAGTTAAAATGCTTCAAG 120 consensus_7370#1 ------------------------------------------------------------ consensus_7370#0 ATCCTGGAACATGTAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTT 180 consensus_7370#1 --------------------------------------------------------ATTT 4 **** consensus_7370#0 ATTATACATTACGTGTTTATTCAACAGC-ACCATTTACCTTGTCAAAAATCAAAG-ATCC 238 consensus_7370#1 TGATTATTTTATG-ACCTATTTTACAGAGATTATGCACTGGGCTTAGAATTAATTCGTAT 63 ** *** * **** **** * ** ** * * *** ** * consensus_7370#0 CTATACTATATCAAAACAAATTACTGGTGAATGGAAAGGATCAAATGCTGGCGGCTGTA- 297 consensus_7370#1 ATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAG 123 * * *** * * *** * * * ** ****** * **** * * * consensus_7370#0 -TAAATGACAAAGAAAGTTATAGTA-CTAATCCACGATTCGAGATTAATGTACCAGATAA 355 consensus_7370#1 GTAATTAATTGTGGTGAAAAAAATAGCTAATTGAC-ATTTATATTTAACAGAT----TCT 178 *** * * * * * ** ***** ** *** **** * * consensus_7370#0 TGATTGTGATAATCAGCTGTTGATTGAATTACGTGGACCAAGAGATTATGCACTGGGCTT 415 consensus_7370#1 TAATTGTATTCATAGGTT--CCATCCCCTTTCTCTGCCTACGTGGTT-----CTGAGCAT 231 * ***** * ** * * ** ** * * * * * * ** *** ** * consensus_7370#0 AGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAAC 475 consensus_7370#1 TCGATTAGCATCAGTAGTCTTCATATTAAGCTTGTGACCCAGTTTATGTATTTGAAC--C 289 **** ** * * ***** * * * ** * * consensus_7370#0 TACTGGAGATTACAGAAGAGGATATGTTGTTCTAGAACAAGCTGGTCTTTCTGGC--GGT 533 consensus_7370#1 CATGTACTCTTATTCAGTTACATTAACCGTACTCGATTA-GCTTATTTTACAGTTTTAGT 348 * *** * ** ** ** ** * *** * ** * * ** consensus_7370#0 GTATACAATGTAATTGTTTCCACTTATCGACCTGGCCAAGAAGGACCATTTATTCTCTCG 593 consensus_7370#1 TCTTAGTATGCAGTTTGCAGTGCATGTCAAT-TGCTTCAGATTTCACGCTAATTAGTTTA 407 ** *** * ** * * ** * ** *** * * *** * consensus_7370#0 GTTAAATCCATAAGAAATTTTTCAATAACTCCCATATGATGAAGATAATTAAGAATATTA 653 consensus_7370#1 ACTAGATTTTTGTA----TTTCACTTAGTCCTTATTCGACCAGCTTAAT-AGAAGAATAA 462 ** ** * *** ** * ** ** * **** * * ** * consensus_7370#0 TCACATCTCCCTCCTNCTCATTGTCATCATTACTCTGGTTTCTTTGAAGTCTTAC 708 consensus_7370#1 GTGCTTTTGGGCGGTAGTTGAA--------------------------------- 484 * * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||