cluster # 7388

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7388 cluster # 7388 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7388#0 length = 348 sequences # 3

consensus_7388#1 length = 326 sequences # 1
consensus_7388#2 length = 198 sequences # 1

consensusID : consensus_7388#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 348
fasta sequence

                              [GATGGTACGGTGATGGACGGAGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATATGTCCAACGCTCGAGCGCCATCCATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGACTTCCATGGCCACCGTCCTGCTGTCTAGTCCGCCATCCATCACCGTACC]

[+] EMBL BG931973             [GATGGTACGGTGATCGATGGAGGACTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATATGTCCAACGCTCGAGCGCCATCCATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGACTTCCATGGCCACCGTCCTGCTGTCTAGTCCGCCATCCATCACCGTACC]
[+] EMBL BG931994             [GATGGTACGGTGATGGACGCGGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATAGGTCCAACGCTCGAGCGCCATCCATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGACTTCCAAGCCCCCCATCCa                              ]
[+] EMBL BG932007             [GATGGTACNGTGATGGACGGCGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGAACAAGTGCAGCTTGCCCTCACACAGCATAGGCCTA                                                                                                                                                          ]




>consensus_7388#0
GATGGTACGGTGATGGACGGAGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCAC
CAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCAC
AGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCAC
ACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATATGTCCAACGCTCGAGCGCCATCC
ATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGAC
TTCCATGGCCACCGTCCTGCTGTCTAGTCCGCCATCCATCACCGTACC

consensusID : consensus_7388#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence

                              [GGTACGGTGAGAGATTGTGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATAGGTCCAACGCTCGAGCGCCATCCATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGACTTCCATGGCCACAGGCCGCCATCGATCAC]

[+] EMBL BG932015             [GGTACGGTGAGAGATTGTGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATAGGTCCAACGCTCGAGCGCCATCCATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGACTTCCATGGCCACAGGCCGCCATCGATCAC]




>consensus_7388#1
GGTACGGTGAGAGATTGTGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAA
GATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGC
GACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACA
GCATAGGCCTAGCTTACAGCAACGGTCCGGTATAGGTCCAACGCTCGAGCGCCATCCATT
TTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGACTTC
CATGGCCACAGGCCGCCATCGATCAC

consensusID : consensus_7388#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 198
fasta sequence

                              [TTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTGGCTCCACCTAGGCTCACGCCTGTTTTTTTCCGCTTGCCACAGCGACCCTCCTACGGGTGGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCCCCCTTACATCAACGGTCCGGTCTAGGCCCAACGCTGG]

[+] EMBL CD091595             [TTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTGGCTCCACCTAGGCTCACGCCTGTTTTTTTCCGCTTGCCACAGCGACCCTCCTACGGGTGGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCCCCCTTACATCAACGGTCCGGTCTAGGCCCAACGCTGG]




>consensus_7388#2
TTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTGGCTCCACCTAGG
CTCACGCCTGTTTTTTTCCGCTTGCCACAGCGACCCTCCTACGGGTGGCCGTCACTCCAT
GCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCCCCCTTACATCAACGGTCCG
GTCTAGGCCCAACGCTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7388#0      GATGGTACGGTGATGGACGGAGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCAC 60
consensus_7388#1      ---GGTACGGTGAGAGATTGTGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCAC 57
consensus_7388#2      --------------------------------TTCTCACTTGAATATTTGCTACTACCAC 28
                                                      ****************************

consensus_7388#0      CAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCAC 120
consensus_7388#1      CAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCAC 117
consensus_7388#2      CAAGATCTGCGCCTGTGGTGGCTCCACCTAGGCTCACGCCTGTTTTTTTCCGCTTGCCAC 88
                      ******************* *** ******************    ** ***** *****

consensus_7388#0      AGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCAC 180
consensus_7388#1      AGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCAC 177
consensus_7388#2      AGCGACCCTCCTACGGGTGGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCAC 148
                      **************  ** *****************************************

consensus_7388#0      ACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATATGTCCAACGCTCGAGCGCCATCC 240
consensus_7388#1      ACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATAGGTCCAACGCTCGAGCGCCATCC 237
consensus_7388#2      ACAGCATAGGCCCCCCTTACATCAACGGTCCGGTCTAGGCCCAACGCTGG---------- 198
                      ************   ****** ************ ** * ******** *          

consensus_7388#0      ATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGAC 300
consensus_7388#1      ATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGAC 297
consensus_7388#2      ------------------------------------------------------------
                                                                                  

consensus_7388#0      TTCCATGGCCACCGTCCTGCTGTCTAGTCCGCCATCCATCACCGTACC 348
consensus_7388#1      TTCCATGGCCAC-------------AGGCCGCCATCGATCAC------ 326
consensus_7388#2      ------------------------------------------------